Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR119G1329 Punica granatum HOM05D002468 ORTHO05D005371 2.5e-248 861.7 444 100.0
Manes.08G100600 Manihot esculenta HOM05D002468 ORTHO05D005371 9.6e-216 753.4 444 87.2
Manes.09G188600 Manihot esculenta HOM05D002468 ORTHO05D005371 2.1e-210 735.7 442 84.8
Atru.chr12.1428 Acer truncatum HOM05D002468 ORTHO05D005371 3.0e-209 731.9 444 85.4
Ciclev10004979m.g Citrus clementina HOM05D002468 ORTHO05D005371 3.0e-209 731.9 447 84.8
Thecc.02G191400 Theobroma cacao HOM05D002468 ORTHO05D005371 3.9e-209 731.5 446 86.1
MD16G1141700 Malus domestica HOM05D002468 ORTHO05D005371 6.7e-209 730.7 445 85.4
Prupe.1G214200 Prunus persica HOM05D002468 ORTHO05D005371 8.7e-209 730.3 445 84.9
Eucgr.G01978 Eucalyptus grandis HOM05D002468 ORTHO05D005371 2.5e-208 728.8 445 86.1
MD13G1131400 Malus domestica HOM05D002468 ORTHO05D005371 7.4e-208 727.2 446 86.1
CANSAT01G0579 Cannabis sativa HOM05D002468 ORTHO05D005371 3.7e-207 724.9 444 84.2
Cpa.g.sc38.67 Carica papaya HOM05D002468 ORTHO05D005371 6.2e-207 724.2 445 84.9
TWI36G1422 Tripterygium wilfordii HOM05D002468 ORTHO05D005371 1.1e-206 723.4 445 85.4
Dinv17539 Davidia involucrata HOM05D002468 ORTHO05D005371 9.0e-206 720.3 444 83.3
Duzib052G0101 Durio zibethinus HOM05D002468 ORTHO05D005371 9.0e-206 720.3 446 84.5
GSVIVG01001098001 Vitis vinifera HOM05D002468 ORTHO05D005371 1.5e-205 719.5 444 84.2
TWI18G0725 Tripterygium wilfordii HOM05D002468 ORTHO05D005371 2.0e-205 719.2 447 85.5
RcHm_v2.0_Chr4g0428801 Rosa chinensis HOM05D002468 ORTHO05D005371 3.4e-205 718.4 446 83.4
CiPaw.06G109900 Carya illinoinensis HOM05D002468 ORTHO05D005371 4.5e-205 718.0 444 84.0
Potri.001G068200 Populus trichocarpa HOM05D002468 ORTHO05D005371 4.5e-205 718.0 444 84.9
Duzib132G1053 Durio zibethinus HOM05D002468 ORTHO05D005371 1.7e-204 716.1 446 84.1
CiPaw.05G100700 Carya illinoinensis HOM05D002468 ORTHO05D005371 2.9e-204 715.3 444 82.9
Sabra03G0117600 Salix brachista HOM05D002468 ORTHO05D005371 3.8e-204 714.9 445 85.4
Cfa009455 Carpinus fangiana HOM05D002468 ORTHO05D005371 1.1e-203 713.4 444 83.1
CSS0032961 Camellia sinensis var. sinensis HOM05D002468 ORTHO05D005371 1.9e-203 712.6 444 82.9
ClCG07G011940 Citrullus lanatus HOM05D002468 ORTHO05D005371 1.9e-203 712.6 443 84.0
FvH4_4g22560 Fragaria vesca HOM05D002468 ORTHO05D005371 1.9e-203 712.6 446 83.4
arahy.Tifrunner.gnm1.ann1.PCZ0HW Arachis hypogaea HOM05D002468 ORTHO05D005371 2.4e-203 712.2 442 82.6
arahy.Tifrunner.gnm1.ann1.S6Z2J3 Arachis hypogaea HOM05D002468 ORTHO05D005371 2.4e-203 712.2 442 82.6
TAR629G1443 Trochodendron aralioides HOM05D002468 ORTHO05D005371 2.4e-203 712.2 444 83.1
CsaV3_4G002210 Cucumis sativus L. HOM05D002468 ORTHO05D005371 3.2e-203 711.8 443 84.0
CSS0030444 Camellia sinensis var. sinensis HOM05D002468 ORTHO05D005371 4.2e-203 711.4 444 82.9
MELO3C017817.2 Cucumis melo HOM05D002468 ORTHO05D005371 4.2e-203 711.4 443 84.7
QL03p049039 Quercus lobata HOM05D002468 ORTHO05D005371 4.2e-203 711.4 443 82.2
FAN07G2580 Fragaria x ananassa HOM05D002468 ORTHO05D005371 5.5e-203 711.1 446 82.7
Dinv03336 Davidia involucrata HOM05D002468 ORTHO05D005371 1.6e-202 709.5 444 82.0
MSTRG.8058 Avicennia marina HOM05D002468 ORTHO05D005371 4.6e-202 708.0 448 82.4
Glyma.08G362900 Glycine max HOM05D002468 ORTHO05D005371 4.6e-202 708.0 442 82.8
Gohir.D04G140900 Gossypium hirsutum HOM05D002468 ORTHO05D005371 4.6e-202 708.0 443 84.2
THA.LOC104807252 Tarenaya hassleriana HOM05D002468 ORTHO05D005371 4.6e-202 708.0 442 83.0
Gorai.012G125900 Gossypium raimondii HOM05D002468 ORTHO05D005371 7.9e-202 707.2 443 84.0
Rhsim12G0017100 Rhododendron simsii HOM05D002468 ORTHO05D005371 1.3e-201 706.4 444 82.7
Peaxi162Scf00842g00319 Petunia axillaris HOM05D002468 ORTHO05D005371 2.3e-201 705.7 444 81.5
VMungo1383G1406 Vigna mungo HOM05D002468 ORTHO05D005371 3.0e-201 705.3 446 82.3
FAN17G0051 Fragaria x ananassa HOM05D002468 ORTHO05D005371 5.1e-201 704.5 444 82.2
Actinidia30583 Actinidia chinensis HOM05D002468 ORTHO05D005371 8.7e-201 703.7 445 82.7
MSTRG.449 Avicennia marina HOM05D002468 ORTHO05D005371 1.1e-200 703.4 445 81.3
Gohir.A04G101700 Gossypium hirsutum HOM05D002468 ORTHO05D005371 1.5e-200 703.0 443 83.5
Glyma.18G299100 Glycine max HOM05D002468 ORTHO05D005371 1.3e-199 699.9 442 82.1
Cc11_g14960 Coffea canephora HOM05D002468 ORTHO05D005371 2.8e-199 698.7 445 81.8
FAN12G2192 Fragaria x ananassa HOM05D002468 ORTHO05D005371 2.8e-199 698.7 444 82.7
Sed0000476 Sechium edule HOM05D002468 ORTHO05D005371 3.7e-199 698.4 442 82.8
Medtr7g006560 Medicago truncatula HOM05D002468 ORTHO05D005371 4.8e-199 698.0 441 80.0
TAR371G0123 Trochodendron aralioides HOM05D002468 ORTHO05D005371 4.8e-199 698.0 419 85.0
Oeu010257.1 Olea europaea HOM05D002468 ORTHO05D005371 8.2e-199 697.2 446 81.2
Phvul.008G003600 Phaseolus vulgaris HOM05D002468 ORTHO05D005371 1.8e-198 696.0 446 80.9
HanXRQChr17g0540381 Helianthus annuus HOM05D002468 ORTHO05D005371 2.4e-198 695.7 447 81.0
TPR.G9718 Trifolium pratense HOM05D002468 ORTHO05D005371 2.4e-198 695.7 440 81.1
Lj1g0025256 Lotus japonicus HOM05D002468 ORTHO05D005371 4.0e-198 694.9 446 80.7
ECA246G0169 Erigeron canadensis HOM05D002468 ORTHO05D005371 5.3e-198 694.5 443 81.5
SalBow2G0960 Salvia bowleyana HOM05D002468 ORTHO05D005371 9.0e-198 693.7 445 81.8
Lsat_1_v5_gn_3_32661 Lactuca sativa HOM05D002468 ORTHO05D005371 3.4e-197 691.8 446 81.2
Aqoxy5G03074 Aquilegia oxysepala HOM05D002468 ORTHO05D005371 5.8e-197 691.0 442 79.2
vmacro01017 Vaccinium macrocarpon HOM05D002468 ORTHO05D005371 1.0e-196 690.3 442 81.2
BraA10t44546Z Brassica rapa HOM05D002468 ORTHO05D005371 1.3e-196 689.9 442 81.7
EL10Ac6g13612 Beta vulgaris HOM05D002468 ORTHO05D005371 2.9e-196 688.7 442 80.8
Thhalv10013572m.g Eutrema salsugineum HOM05D002468 ORTHO05D005371 6.5e-196 687.6 446 80.9
Hund14581 Selenicereus undatus HOM05D002468 ORTHO05D005371 8.4e-196 687.2 443 79.2
A10p24820 Brassica napus HOM05D002468 ORTHO05D005371 1.9e-195 686.0 442 81.4
CAN.G624.1 Capsicum annuum HOM05D002468 ORTHO05D005371 3.2e-195 685.3 445 80.4
Lalb_Chr04g0257301 Lupinus albus HOM05D002468 ORTHO05D005371 3.2e-195 685.3 442 81.0
Sed0003563 Sechium edule HOM05D002468 ORTHO05D005371 3.2e-195 685.3 443 82.2
Ca_04094_v3 Cicer arietinum L. HOM05D002468 ORTHO05D005371 5.5e-195 684.5 444 80.2
C09p63670 Brassica napus HOM05D002468 ORTHO05D005371 9.3e-195 683.7 442 80.8
BolC9t59208H Brassica oleracea HOM05D002468 ORTHO05D005371 9.3e-195 683.7 442 80.8
AUR62028839 Chenopodium quinoa HOM05D002468 ORTHO05D005371 1.2e-194 683.3 399 85.5
Ah.03g135540 Amaranthus hybridus HOM05D002468 ORTHO05D005371 2.1e-194 682.6 441 78.9
AUR62005716 Chenopodium quinoa HOM05D002468 ORTHO05D005371 2.7e-194 682.2 399 85.2
Solyc11g033288.1 Solanum lycopersicum HOM05D002468 ORTHO05D005371 1.8e-193 679.5 444 79.7
Sopen11g017140 Solanum pennellii HOM05D002468 ORTHO05D005371 3.9e-193 678.3 444 79.5
Carub.0006s1158 Capsella rubella HOM05D002468 ORTHO05D005371 5.1e-193 677.9 448 80.1
HanXRQChr06g0175161 Helianthus annuus HOM05D002468 ORTHO05D005371 5.1e-193 677.9 446 78.7
BcaC04g19118 Brassica carinata HOM05D002468 ORTHO05D005371 8.7e-193 677.2 443 80.1
Psat3g207000 Pisum sativum HOM05D002468 ORTHO05D005371 8.7e-193 677.2 441 79.1
PGSC0003DMG402028027 Solanum tuberosum HOM05D002468 ORTHO05D005371 1.5e-192 676.4 445 79.6
Sc11g0000080 Simmondsia chinensis HOM05D002468 ORTHO05D005371 2.5e-192 675.6 442 79.0
Sp6g30600 Schrenkiella parvula HOM05D002468 ORTHO05D005371 3.3e-192 675.2 416 83.4
AL6G24040 Arabidopsis lyrata HOM05D002468 ORTHO05D005371 4.3e-192 674.9 442 79.9
AT5G13420 Arabidopsis thaliana HOM05D002468 ORTHO05D005371 4.3e-192 674.9 445 80.2
PSO478G3355 Papaver somniferum HOM05D002468 ORTHO05D005371 7.4e-192 674.1 441 78.5
Migut.K01049 Erythranthe guttata HOM05D002468 ORTHO05D005371 2.2e-191 672.5 445 79.6
C02p06130 Brassica napus HOM05D002468 ORTHO05D005371 3.7e-191 671.8 443 79.2
BolC2t06554H Brassica oleracea HOM05D002468 ORTHO05D005371 3.7e-191 671.8 443 79.2
DCAR_024636 Daucus carota HOM05D002468 ORTHO05D005371 3.7e-191 671.8 445 80.0
PSO017G4233 Papaver somniferum HOM05D002468 ORTHO05D005371 4.8e-191 671.4 441 78.9
CARHR200010 Cardamine hirsuta HOM05D002468 ORTHO05D005371 8.2e-191 670.6 442 79.2
BraA03t09933Z Brassica rapa HOM05D002468 ORTHO05D005371 5.3e-190 667.9 443 79.0
A03p05960 Brassica napus HOM05D002468 ORTHO05D005371 9.0e-190 667.2 443 79.0
Haze_12509 Corylus avellana HOM05D002468 ORTHO05D005371 1.3e-188 663.3 416 81.2
SGA_v2.0_scaffold258G45768 Striga asiatica HOM05D002468 ORTHO05D005371 5.0e-188 661.4 448 77.5
A02p01910 Brassica napus HOM05D002468 ORTHO05D005371 1.9e-187 659.4 417 81.1
BraA02t05164Z Brassica rapa HOM05D002468 ORTHO05D005371 1.9e-187 659.4 417 81.1
C03p07000 Brassica napus HOM05D002468 ORTHO05D005371 9.4e-187 657.1 443 77.7
BolC3t13199H Brassica oleracea HOM05D002468 ORTHO05D005371 9.4e-187 657.1 443 77.7
unitig_8.g2893 Utricularia gibba HOM05D002468 ORTHO05D005371 3.6e-186 655.2 401 82.5
MBI07_g35982_MAGBIO Magnolia biondii HOM05D002468 ORTHO05D005371 7.9e-186 654.1 444 76.8
HanXRQChr06g0175171 Helianthus annuus HOM05D002468 ORTHO05D005371 1.4e-182 643.3 445 76.0
Os01g0926300 Oryza sativa ssp. japonica HOM05D002468 ORTHO05D005371 2.0e-181 639.4 438 75.1
Aa31LG3G14290 Aethionema arabicum HOM05D002468 ORTHO05D005371 2.9e-180 635.6 516 66.5
CDE05G3080 Ceratophyllum demersum HOM05D002468 ORTHO05D005371 6.5e-180 634.4 401 80.0
CSS0032033 Camellia sinensis var. sinensis HOM05D002468 ORTHO05D005371 1.4e-179 633.3 391 83.4
Zm00001eb363880 Zea mays HOM05D002468 ORTHO05D005371 1.4e-179 633.3 442 74.4
HPP92_009801 Vanilla planifolia HOM05D002468 ORTHO05D005371 2.5e-179 632.5 421 77.2
Zm00001eb142730 Zea mays HOM05D002468 ORTHO05D005371 2.1e-178 629.4 442 74.2
CDE05G2158 Ceratophyllum demersum HOM05D002468 ORTHO05D005371 4.7e-178 628.2 431 75.4
MBI07_g48060_MAGBIO Magnolia biondii HOM05D002468 ORTHO05D005371 8.8e-177 624.0 486 69.5
ATR0582G307 Amborella trichopoda HOM05D002468 ORTHO05D005371 1.3e-175 620.2 381 81.4
Nitab4.5_0004349g0040 Nicotiana tabacum HOM05D002468 ORTHO05D005371 1.7e-175 619.8 442 75.3
BcaB01g05361 Brassica carinata HOM05D002468 ORTHO05D005371 2.0e-173 612.8 443 73.8
Actinidia22113 Actinidia chinensis HOM05D002468 ORTHO05D005371 9.4e-171 604.0 383 82.0
Nitab4.5_0002569g0040 Nicotiana tabacum HOM05D002468 ORTHO05D005371 8.2e-167 590.9 446 72.6
Potri.003G161900 Populus trichocarpa HOM05D002468 ORTHO05D005371 2.5e-163 579.3 372 83.3
BcaNung01156 Brassica carinata HOM05D002468 ORTHO05D005371 7.5e-160 567.8 394 76.9
Lj4g0027400 Lotus japonicus HOM05D002468 ORTHO05D005371 5.2e-153 545.0 427 65.6
Lalb_Chr10g0091121 Lupinus albus HOM05D002468 ORTHO05D005371 6.8e-153 544.7 364 79.9
Lj6C840T10 Lonicera japonica HOM05D002468 ORTHO05D005371 3.4e-152 542.3 307 89.9
Lalb_Chr13g0296941 Lupinus albus HOM05D002468 ORTHO05D005371 3.7e-151 538.9 371 69.0
AagrBONN_evm.TU.Sc2ySwM_228.2334 Anthoceros agrestis HOM05D002468 ORTHO05D005371 8.3e-151 537.7 408 67.2
Glyma.05G199800 Glycine max HOM05D002468 ORTHO05D005371 2.3e-145 519.6 363 69.1
Medtr8g096130 Medicago truncatula HOM05D002468 ORTHO05D005371 5.2e-145 518.5 370 69.2
Ca_16823_v3 Cicer arietinum L. HOM05D002468 ORTHO05D005371 7.5e-144 514.6 382 65.2
TPR.G12900 Trifolium pratense HOM05D002468 ORTHO05D005371 6.3e-143 511.5 389 66.3
Phvul.002G281000 Phaseolus vulgaris HOM05D002468 ORTHO05D005371 1.1e-142 510.8 378 65.6
Mapoly0092s0071 Marchantia polymorpha HOM05D002468 ORTHO05D005371 1.4e-142 510.4 377 67.6
VMungo0251G2964 Vigna mungo HOM05D002468 ORTHO05D001247 4.5e-141 505.4 366 65.8
SMO367G1271 Selaginella moellendorffii HOM05D002468 ORTHO05D005371 5.9e-141 505.0 361 70.9
Mapoly0092s0072 Marchantia polymorpha HOM05D002468 ORTHO05D005371 2.3e-140 503.1 377 66.6
Mapoly0092s0073 Marchantia polymorpha HOM05D002468 ORTHO05D005371 2.9e-140 502.7 377 66.6
ClCG06G013000 Citrullus lanatus HOM05D002468 ORTHO05D005371 5.8e-136 488.4 376 62.8
Pp3c26_4790 Physcomitrium patens HOM05D002468 ORTHO05D005371 5.8e-136 488.4 401 62.3
MELO3C017506.2 Cucumis melo HOM05D002468 ORTHO05D005371 4.3e-131 472.2 376 62.0
SHI04110 Sapria himalayana HOM05D002468 ORTHO05D005371 9.5e-131 471.1 318 77.0
Cpa.g.sc2215.1 Carica papaya HOM05D002468 ORTHO05D005371 1.6e-130 470.3 359 64.1
CBR_g51451 Chara braunii HOM05D002468 ORTHO05D005371 5.6e-115 418.7 360 61.1
arahy.Tifrunner.gnm1.ann1.93S04R Arachis hypogaea HOM05D002468 ORTHO05D005371 5.6e-99 365.5 366 55.5
Eucgr.H00650 Eucalyptus grandis HOM05D002468 ORTHO05D005371 1.1e-94 351.3 302 61.3
Lj2g0022028 Lotus japonicus HOM05D002468 ORTHO05D005371 1.1e-83 314.7 215 74.4
BolC3t13348H Brassica oleracea HOM05D002468 ORTHO05D005371 4.8e-74 282.7 188 79.8
Mapoly0189s0003 Marchantia polymorpha HOM05D002468 ORTHO05D005371 2.5e-67 260.4 339 43.4
C03p08440 Brassica napus HOM05D002468 ORTHO05D005371 2.2e-63 247.3 140 90.0
arahy.Tifrunner.gnm1.ann1.1XR5VC Arachis hypogaea HOM05D002468 ORTHO05D005371 3.3e-59 233.4 199 60.8
HanXRQChr10g0304361 Helianthus annuus HOM05D002468 ORTHO05D005371 1.7e-58 231.1 123 87.8
Glyma.15G205533 Glycine max HOM05D002468 ORTHO05D005371 1.0e-55 221.9 160 70.0
CsaV3_1G031170 Cucumis sativus L. HOM05D002468 ORTHO05D005371 1.1e-38 165.2 162 53.7
BcaB01g05316 Brassica carinata HOM05D000877 ORTHO05D012137 7.2e-38 162.5 165 59.4
Glyma.08G007300 Glycine max HOM05D002468 ORTHO05D005371 2.1e-37 161.0 119 68.9
BolC3t13237H Brassica oleracea HOM05D000877 ORTHO05D012137 1.7e-34 151.4 81 92.6
Lalb_Chr10g0091111 Lupinus albus HOM05D002468 ORTHO05D005371 3.8e-31 140.2 82 84.1
SGA_v2.0_scaffold4G02418 Striga asiatica HOM05D002468 ORTHO05D051394 2.6e-27 127.5 112 56.2
CsaV3_1G031160 Cucumis sativus L. HOM05D002468 ORTHO05D005371 1.1e-25 122.1 80 70.0
SEGI_31132 Sequoiadendron giganteum HOM05D002468 ORTHO05D005371 2.3e-20 104.4 145 46.2
SGA_v2.0_scaffold528G52739 Striga asiatica HOM05D002468 ORTHO05D051394 1.7e-18 98.2 51 84.3
Pp3c3_15390 Physcomitrium patens HOM05D002468 ORTHO05D005371 9.5e-14 82.4 94 48.9
vmacro08874 Vaccinium macrocarpon HOM05D002468 ORTHO05D013153 5.1e-07 60.1 145 35.2


User provided reference genes

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