Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR119G1257 Punica granatum HOM05D004986 ORTHO05D005898 3.5e-236 821.2 417 100.0
QL11p035166 Quercus lobata HOM05D004986 ORTHO05D005898 1.2e-140 503.8 397 66.2
Atru.chr10.1816 Acer truncatum HOM05D004986 ORTHO05D005898 4.7e-140 501.9 398 65.8
CSS0007723 Camellia sinensis var. sinensis HOM05D004986 ORTHO05D005898 2.3e-139 499.6 393 67.2
Eucgr.I02210 Eucalyptus grandis HOM05D004986 ORTHO05D005898 4.0e-139 498.8 413 65.6
Manes.02G115500 Manihot esculenta HOM05D004986 ORTHO05D005898 6.8e-139 498.0 397 65.7
Atru.chr10.1831 Acer truncatum HOM05D004986 ORTHO05D005898 1.2e-138 497.3 399 65.7
Cfa007104 Carpinus fangiana HOM05D004986 ORTHO05D005898 3.7e-137 492.3 409 64.3
Hma1.2p1_0085F.1_g044450 Hydrangea macrophylla HOM05D004986 ORTHO05D005898 8.3e-137 491.1 404 63.4
Prupe.7G185600 Prunus persica HOM05D004986 ORTHO05D005898 5.4e-136 488.4 416 62.7
Ciclev10025602m.g Citrus clementina HOM05D004986 ORTHO05D005898 1.2e-135 487.3 396 64.4
Actinidia32993 Actinidia chinensis HOM05D004986 ORTHO05D005898 2.1e-135 486.5 396 66.4
Thecc.01G002600 Theobroma cacao HOM05D004986 ORTHO05D005898 2.7e-135 486.1 396 64.4
Dinv28304 Davidia involucrata HOM05D004986 ORTHO05D005898 3.5e-135 485.7 402 64.4
Lj3g0020964 Lotus japonicus HOM05D004986 ORTHO05D005898 4.6e-135 485.3 398 64.8
GSVIVG01022308001 Vitis vinifera HOM05D004986 ORTHO05D005898 6.0e-135 485.0 393 63.9
Manes.01G157000 Manihot esculenta HOM05D004986 ORTHO05D005898 7.8e-135 484.6 397 63.5
Lalb_Chr05g0214931 Lupinus albus HOM05D004986 ORTHO05D005898 1.0e-134 484.2 397 63.5
Actinidia22885 Actinidia chinensis HOM05D004986 ORTHO05D005898 6.6e-134 481.5 396 65.9
arahy.Tifrunner.gnm1.ann1.H550X0 Arachis hypogaea HOM05D004986 ORTHO05D005898 8.6e-134 481.1 396 64.1
Rhsim10G0191900 Rhododendron simsii HOM05D004986 ORTHO05D005898 5.6e-133 478.4 396 64.9
Ca_02840_v3 Cicer arietinum L. HOM05D004986 ORTHO05D005898 8.1e-132 474.6 413 62.0
FvH4_1g10130 Fragaria vesca HOM05D004986 ORTHO05D005898 3.1e-131 472.6 411 61.1
FAN23G1121 Fragaria x ananassa HOM05D004986 ORTHO05D005898 3.1e-131 472.6 411 61.1
RcHm_v2.0_Chr2g0096901 Rosa chinensis HOM05D004986 ORTHO05D005898 5.2e-131 471.9 415 60.0
Duzib106G1274 Durio zibethinus HOM05D004986 ORTHO05D005898 8.9e-131 471.1 403 61.8
FAN23G2177 Fragaria x ananassa HOM05D004986 ORTHO05D005898 2.0e-130 469.9 411 61.1
MD15G1228500 Malus domestica HOM05D004986 ORTHO05D005898 7.6e-130 468.0 414 58.7
Nitab4.5_0004269g0070 Nicotiana tabacum HOM05D004986 ORTHO05D005898 7.6e-130 468.0 400 62.5
TWI53G0851 Tripterygium wilfordii HOM05D004986 ORTHO05D005898 1.3e-129 467.2 418 61.2
Phvul.010G020700 Phaseolus vulgaris HOM05D004986 ORTHO05D005898 6.4e-129 464.9 408 61.3
Haze_03636 Corylus avellana HOM05D004986 ORTHO05D005898 1.4e-128 463.8 451 58.5
Nitab4.5_0000495g0010 Nicotiana tabacum HOM05D004986 ORTHO05D005898 1.4e-128 463.8 400 62.2
FAN19G1207 Fragaria x ananassa HOM05D004986 ORTHO05D005898 1.9e-128 463.4 411 60.1
Peaxi162Scf00920g00114 Petunia axillaris HOM05D004986 ORTHO05D005898 7.1e-128 461.5 419 59.7
Psat4g105800 Pisum sativum HOM05D004986 ORTHO05D005898 2.1e-127 459.9 417 60.4
Cpa.g.sc91.49 Carica papaya HOM05D004986 ORTHO05D005898 4.6e-127 458.8 413 60.0
FAN26G2552 Fragaria x ananassa HOM05D004986 ORTHO05D005898 4.6e-127 458.8 411 59.6
FAN28G2129 Fragaria x ananassa HOM05D004986 ORTHO05D005898 4.6e-127 458.8 411 59.6
Cc07_g12070 Coffea canephora HOM05D004986 ORTHO05D005898 1.0e-126 457.6 420 58.6
CiPaw.07G000800 Carya illinoinensis HOM05D004986 ORTHO05D005898 1.7e-126 456.8 396 62.4
Migut.B01487 Erythranthe guttata HOM05D004986 ORTHO05D005898 2.3e-126 456.4 416 58.2
arahy.Tifrunner.gnm1.ann1.UZ6AL0 Arachis hypogaea HOM05D004986 ORTHO05D005898 6.6e-126 454.9 429 58.7
Gorai.005G068600 Gossypium raimondii HOM05D004986 ORTHO05D005898 8.6e-126 454.5 401 59.9
DCAR_024399 Daucus carota HOM05D004986 ORTHO05D005898 1.1e-125 454.1 397 60.5
Medtr8g073110 Medicago truncatula HOM05D004986 ORTHO05D005898 1.5e-125 453.8 414 58.7
Gohir.A02G179000 Gossypium hirsutum HOM05D004986 ORTHO05D005898 1.9e-125 453.4 413 58.6
Oeu002901.1 Olea europaea HOM05D004986 ORTHO05D005898 1.9e-125 453.4 400 59.0
Glyma.16G112300 Glycine max HOM05D004986 ORTHO05D005898 2.5e-125 453.0 403 60.0
VMungo0331G1669 Vigna mungo HOM05D004986 ORTHO05D005898 2.5e-125 453.0 407 59.2
Glyma.09G196600 Glycine max HOM05D004986 ORTHO05D005898 3.3e-125 452.6 404 60.6
Gohir.D03G000700 Gossypium hirsutum HOM05D004986 ORTHO05D005898 7.3e-125 451.4 404 59.7
CAN.G647.4 Capsicum annuum HOM05D004986 ORTHO05D005898 1.6e-124 450.3 394 61.2
Gorai.003G001100 Gossypium raimondii HOM05D004986 ORTHO05D005898 1.6e-124 450.3 404 59.9
Gohir.D02G061000 Gossypium hirsutum HOM05D004986 ORTHO05D005898 3.6e-124 449.1 401 59.4
TAR628G0962 Trochodendron aralioides HOM05D004986 ORTHO05D005898 4.7e-124 448.7 399 61.2
Gohir.A02G055800 Gossypium hirsutum HOM05D004986 ORTHO05D005898 6.2e-124 448.4 401 59.4
PGSC0003DMG400018667 Solanum tuberosum HOM05D004986 ORTHO05D005898 4.0e-123 445.7 394 59.6
CANSAT21G0416 Cannabis sativa HOM05D004986 ORTHO05D005898 1.5e-122 443.7 415 60.0
Aqoxy6G01559 Aquilegia oxysepala HOM05D004986 ORTHO05D005898 2.0e-122 443.4 409 59.2
Carub.0008s2856 Capsella rubella HOM05D004986 ORTHO05D005898 1.3e-121 440.7 398 59.8
AT5G65960 Arabidopsis thaliana HOM05D004986 ORTHO05D005898 4.9e-121 438.7 396 58.6
MSTRG.17107 Avicennia marina HOM05D004986 ORTHO05D005898 6.4e-121 438.3 395 57.7
Sopen03g005900 Solanum pennellii HOM05D004986 ORTHO05D005898 8.4e-121 438.0 394 59.6
Sed0027663 Sechium edule HOM05D004986 ORTHO05D005898 4.2e-120 435.6 397 58.9
CsaV3_4G027660 Cucumis sativus L. HOM05D004986 ORTHO05D005898 5.4e-120 435.3 414 57.7
HanXRQChr10g0316221 Helianthus annuus HOM05D004986 ORTHO05D005898 5.4e-120 435.3 405 56.8
Solyc03g032050.4 Solanum lycopersicum HOM05D004986 ORTHO05D005898 5.4e-120 435.3 418 57.2
PSO170G5246 Papaver somniferum HOM05D004986 ORTHO05D005898 2.1e-119 433.3 402 59.0
SalBow5G3763 Salvia bowleyana HOM05D004986 ORTHO05D005898 2.1e-119 433.3 393 57.0
TAR381G0383 Trochodendron aralioides HOM05D004986 ORTHO05D005898 2.1e-119 433.3 402 57.5
AL8G45680 Arabidopsis lyrata HOM05D004986 ORTHO05D005898 4.6e-119 432.2 398 58.3
Aa31LG1G14460 Aethionema arabicum HOM05D004986 ORTHO05D005898 1.3e-118 430.6 399 57.1
vmacro20612 Vaccinium macrocarpon HOM05D004986 ORTHO05D005898 1.7e-118 430.3 401 58.9
ECA240G4103 Erigeron canadensis HOM05D004986 ORTHO05D005898 2.3e-118 429.9 397 58.2
ClCG04G005010 Citrullus lanatus HOM05D004986 ORTHO05D005898 1.1e-117 427.6 393 58.5
MELO3C026343.2 Cucumis melo HOM05D004986 ORTHO05D005898 4.3e-117 425.6 398 57.8
Thhalv10004346m.g Eutrema salsugineum HOM05D004986 ORTHO05D005898 9.6e-117 424.5 398 57.5
Hund21384 Selenicereus undatus HOM05D004986 ORTHO05D005898 8.1e-116 421.4 406 56.9
Sp2g30730 Schrenkiella parvula HOM05D004986 ORTHO05D005898 5.3e-115 418.7 397 56.2
Nn5g31026 Nelumbo nucifera HOM05D004986 ORTHO05D005898 9.0e-115 417.9 450 52.4
THA.LOC104826450 Tarenaya hassleriana HOM05D004986 ORTHO05D005898 1.5e-114 417.2 404 58.2
Sabra02G0136200 Salix brachista HOM05D004986 ORTHO05D005898 4.9e-113 412.1 413 57.1
Lj2C503G0 Lonicera japonica HOM05D004986 ORTHO05D005898 7.1e-112 408.3 389 58.4
SGA_v2.0_scaffold52G19267 Striga asiatica HOM05D004986 ORTHO05D005898 3.5e-111 406.0 373 56.3
Lsat_1_v5_gn_2_73561 Lactuca sativa HOM05D004986 ORTHO05D005898 8.7e-110 401.4 404 55.2
EL10Ac3g05234 Beta vulgaris HOM05D004986 ORTHO05D005898 5.6e-109 398.7 406 53.4
CARHR257450 Cardamine hirsuta HOM05D004986 ORTHO05D005898 2.4e-107 393.3 403 55.3
SGA_v2.0_scaffold34G13577 Striga asiatica HOM05D004986 ORTHO05D005898 2.4e-107 393.3 423 50.8
unitig_26.g8860 Utricularia gibba HOM05D004986 ORTHO05D005898 2.4e-107 393.3 395 54.7
A09p10240 Brassica napus HOM05D004986 ORTHO05D005898 7.6e-106 388.3 396 55.1
Os04g0584800 Oryza sativa ssp. japonica HOM05D004986 ORTHO05D005898 5.5e-104 382.1 411 51.8
Ah.10g026930 Amaranthus hybridus HOM05D004986 ORTHO05D005898 2.5e-101 373.2 406 51.0
BcaC04g23101 Brassica carinata HOM05D004986 ORTHO05D005898 5.6e-101 372.1 400 53.5
Zm00001eb072790 Zea mays HOM05D004986 ORTHO05D005898 9.6e-101 371.3 412 50.2
BolC9t54105H Brassica oleracea HOM05D004986 ORTHO05D005898 2.1e-100 370.2 404 53.2
C09p12150 Brassica napus HOM05D004986 ORTHO05D005898 1.4e-99 367.5 400 53.5
BcaB04g20132 Brassica carinata HOM05D004986 ORTHO05D005898 4.5e-98 362.5 404 52.5
BraA09t36669Z Brassica rapa HOM05D004986 ORTHO05D005898 1.0e-97 361.3 414 52.4
Potri.002G177100 Populus trichocarpa HOM05D004986 ORTHO05D005898 1.3e-97 360.9 321 62.3
Hma1.2p1_0085F.1_g044460 Hydrangea macrophylla HOM05D004986 ORTHO05D005898 1.7e-97 360.5 297 62.3
HPP92_007280 Vanilla planifolia HOM05D004986 ORTHO05D005898 7.1e-96 355.1 409 48.4
AUR62006055 Chenopodium quinoa HOM05D004986 ORTHO05D005898 1.2e-95 354.4 407 51.4
MBI13_g20494_MAGBIO Magnolia biondii HOM05D004986 ORTHO05D005898 4.6e-95 352.4 458 47.6
Psat0s3210g0040 Pisum sativum HOM05D004986 ORTHO05D005898 7.9e-95 351.7 283 64.0
ATR0807G113 Amborella trichopoda HOM05D004986 ORTHO05D005898 1.4e-91 340.9 466 45.1
COL.COLO4_34271 Corchorus olitorius HOM05D004986 ORTHO05D005898 2.4e-91 340.1 408 50.5
Potri.007G064500 Populus trichocarpa HOM05D004986 ORTHO05D005898 1.2e-87 327.8 387 50.1
CARHR281810 Cardamine hirsuta HOM05D004986 ORTHO05D005898 2.1e-87 327.0 265 62.3
SEGI_13138 Sequoiadendron giganteum HOM05D004986 ORTHO05D005898 1.3e-81 307.8 404 46.3
Sc05g0009010 Simmondsia chinensis HOM05D004986 ORTHO05D005898 1.4e-80 304.3 307 53.7
Atru.chr3.37 Acer truncatum HOM05D004986 ORTHO05D005898 4.2e-80 302.8 409 45.2
Mapoly0024s0125 Marchantia polymorpha HOM05D004986 ORTHO05D005898 2.1e-79 300.4 420 41.9
Oeu037412.2 Olea europaea HOM05D004986 ORTHO05D005898 3.9e-78 296.2 425 44.9
Dinv40206 Davidia involucrata HOM05D004986 ORTHO05D005898 1.4e-72 277.7 249 62.2
Lj4g0017944 Lotus japonicus HOM05D004986 ORTHO05D005898 1.0e-70 271.6 366 45.9
CDE04G0629 Ceratophyllum demersum HOM05D004986 ORTHO05D005898 9.7e-69 265.0 407 41.0
Pp3c17_5460 Physcomitrium patens HOM05D004986 ORTHO05D005898 1.8e-67 260.8 439 38.5
AagrBONN_evm.TU.Sc2ySwM_362.836 Anthoceros agrestis HOM05D004986 ORTHO05D005898 2.0e-66 257.3 454 38.3
SMO147G0325 Selaginella moellendorffii HOM05D004986 ORTHO05D005898 3.2e-64 250.0 402 41.0
MD02G1112100 Malus domestica HOM05D004986 ORTHO05D005898 4.5e-58 229.6 166 62.0
HanXRQChr13g0388311 Helianthus annuus HOM05D004986 ORTHO05D005898 1.0e-54 218.4 225 53.3
CDE07G1230 Ceratophyllum demersum HOM05D004986 ORTHO05D005898 6.8e-54 215.7 251 45.4
HanXRQChr13g0388301 Helianthus annuus HOM05D004986 ORTHO05D005898 1.2e-53 214.9 191 58.6
Sed0024004 Sechium edule HOM05D004986 ORTHO05D005898 4.0e-46 189.9 303 42.6
MD02G1109300 Malus domestica HOM05D004986 ORTHO05D005898 7.5e-45 185.7 177 54.2
MD02G1113000 Malus domestica HOM05D004986 ORTHO05D005898 8.3e-44 182.2 155 58.1
Atru.chr3.33 Acer truncatum HOM05D004986 ORTHO05D005898 8.6e-41 172.2 111 73.0
AUR62035574 Chenopodium quinoa HOM05D004986 ORTHO05D005898 2.1e-39 167.5 174 48.9
SGA_v2.0_scaffold578G53029 Striga asiatica HOM05D004986 ORTHO05D005898 3.4e-37 160.2 197 46.7
CBR_g24177 Chara braunii HOM05D004986 ORTHO05D005898 4.0e-30 136.7 355 31.8
Atru.chr3.32 Acer truncatum HOM05D004986 ORTHO05D005898 9.8e-29 132.1 180 48.3
TPR.G33051 Trifolium pratense HOM05D004986 ORTHO05D005898 2.2e-28 131.0 99 63.6
MD02G1113100 Malus domestica HOM05D004986 ORTHO05D005898 1.1e-27 128.6 183 45.4
MD02G1112600 Malus domestica HOM05D004986 ORTHO05D005898 2.0e-21 107.8 152 39.5
MBI15_g18235_MAGBIO Magnolia biondii HOM05D004986 ORTHO05D005898 1.7e-17 94.7 120 47.5
Zm00001eb338840 Zea mays HOM05D004986 ORTHO05D005898 2.8e-15 87.4 67 64.2
MD02G1112300 Malus domestica HOM05D004986 ORTHO05D005898 1.8e-14 84.7 91 49.5
Zm00001eb355160 Zea mays HOM05D004986 ORTHO05D005898 1.8e-14 84.7 144 40.3
CARHR281800 Cardamine hirsuta HOM05D004986 ORTHO05D005898 6.8e-14 82.8 51 76.5
arahy.Tifrunner.gnm1.ann1.06FJIN Arachis hypogaea HOM05D004986 ORTHO05D005898 6.4e-12 76.3 63 63.5
arahy.Tifrunner.gnm1.ann1.757MF4 Arachis hypogaea HOM05D004986 ORTHO05D005898 6.4e-12 76.3 63 63.5
MCO09G766 Micromonas commoda HOM05D004986 ORTHO05D005898 4.1e-11 73.6 401 23.2
arahy.Tifrunner.gnm1.ann1.864E1P Arachis hypogaea HOM05D004986 ORTHO05D005898 8.7e-09 65.9 95 45.3
arahy.Tifrunner.gnm1.ann1.GJAM3K Arachis hypogaea HOM05D004986 ORTHO05D005898 8.7e-09 65.9 95 45.3
CDE04G2304 Ceratophyllum demersum HOM05D004986 ORTHO05D005898 2.8e-07 60.8 176 30.7


User provided reference genes

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