Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR119G1149 Punica granatum HOM05D003958 ORTHO05D004864 5.0e-179 630.9 309 100.0
PGR054G0003 Punica granatum HOM05D003958 ORTHO05D004864 2.5e-178 628.6 309 99.7
Duzib147G0566 Durio zibethinus HOM05D003958 ORTHO05D004864 4.6e-140 501.5 309 79.9
Eucgr.I01766 Eucalyptus grandis HOM05D003958 ORTHO05D004864 6.0e-140 501.1 307 79.2
Duzib147G0735 Durio zibethinus HOM05D003958 ORTHO05D004864 1.5e-138 496.5 309 79.3
DCAR_009028 Daucus carota HOM05D003958 ORTHO05D004864 4.3e-138 495.0 309 77.3
Duzib147G0897 Durio zibethinus HOM05D003958 ORTHO05D004864 4.3e-138 495.0 309 79.6
QL02p075632 Quercus lobata HOM05D003958 ORTHO05D004864 9.5e-138 493.8 310 77.4
PGSC0003DMG400000483 Solanum tuberosum HOM05D003958 ORTHO05D004864 1.4e-136 490.0 309 77.7
Nitab4.5_0008215g0010 Nicotiana tabacum HOM05D003958 ORTHO05D004864 1.8e-136 489.6 309 77.7
CSS0020788 Camellia sinensis var. sinensis HOM05D003958 ORTHO05D004864 5.2e-136 488.0 310 78.1
CSS0020854 Camellia sinensis var. sinensis HOM05D003958 ORTHO05D004864 5.2e-136 488.0 310 78.1
Nitab4.5_0002739g0040 Nicotiana tabacum HOM05D003958 ORTHO05D004864 5.2e-136 488.0 309 77.7
Sopen02g031390 Solanum pennellii HOM05D003958 ORTHO05D004864 5.2e-136 488.0 309 76.7
CAN.G206.10 Capsicum annuum HOM05D003958 ORTHO05D004864 6.8e-136 487.6 309 77.0
Lj3g0001252 Lotus japonicus HOM05D003958 ORTHO05D004864 1.5e-135 486.5 308 76.9
Lalb_Chr03g0031671 Lupinus albus HOM05D003958 ORTHO05D004864 2.6e-135 485.7 308 76.3
FvH4_6g51011 Fragaria vesca HOM05D003958 ORTHO05D004864 4.4e-135 485.0 310 76.8
COL.COLO4_29053 Corchorus olitorius HOM05D003958 ORTHO05D004864 5.8e-135 484.6 309 76.7
Peaxi162Scf00129g01325 Petunia axillaris HOM05D003958 ORTHO05D004864 7.6e-135 484.2 309 76.7
TAR622G1043 Trochodendron aralioides HOM05D003958 ORTHO05D004864 9.9e-135 483.8 311 77.2
Lj7A595G65 Lonicera japonica HOM05D003958 ORTHO05D004864 1.3e-134 483.4 311 76.2
Thecc.04G013700 Theobroma cacao HOM05D003958 ORTHO05D004864 1.7e-134 483.0 309 77.0
ClCG01G008920 Citrullus lanatus HOM05D003958 ORTHO05D004864 2.2e-134 482.6 311 76.5
Gohir.D13G007800 Gossypium hirsutum HOM05D003958 ORTHO05D004864 2.9e-134 482.3 305 77.7
Phvul.011G172200 Phaseolus vulgaris HOM05D003958 ORTHO05D004864 2.9e-134 482.3 310 76.1
CiPaw.03G040700 Carya illinoinensis HOM05D003958 ORTHO05D004864 8.3e-134 480.7 310 76.1
Gohir.A09G027800 Gossypium hirsutum HOM05D003958 ORTHO05D004864 8.3e-134 480.7 309 77.3
Atru.chr6.2341 Acer truncatum HOM05D003958 ORTHO05D004864 1.1e-133 480.3 311 77.2
Gohir.D09G027100 Gossypium hirsutum HOM05D003958 ORTHO05D004864 1.1e-133 480.3 309 77.3
Gorai.006G031600 Gossypium raimondii HOM05D003958 ORTHO05D004864 1.1e-133 480.3 309 77.3
Sed0009763 Sechium edule HOM05D003958 ORTHO05D004864 1.9e-133 479.6 309 77.0
arahy.Tifrunner.gnm1.ann1.38SPRB Arachis hypogaea HOM05D003958 ORTHO05D004864 3.2e-133 478.8 310 75.8
CiPaw.04G026700 Carya illinoinensis HOM05D003958 ORTHO05D004864 5.4e-133 478.0 310 76.1
Manes.17G113700 Manihot esculenta HOM05D003958 ORTHO05D004864 5.4e-133 478.0 309 76.7
RcHm_v2.0_Chr2g0172551 Rosa chinensis HOM05D003958 ORTHO05D004864 5.4e-133 478.0 311 76.2
arahy.Tifrunner.gnm1.ann1.CB8F3G Arachis hypogaea HOM05D003958 ORTHO05D004864 7.1e-133 477.6 310 75.8
Ciclev10016011m.g Citrus clementina HOM05D003958 ORTHO05D004864 1.6e-132 476.5 310 76.1
Aqoxy3G00906 Aquilegia oxysepala HOM05D003958 ORTHO05D004864 2.1e-132 476.1 312 74.7
CANSAT64G0951 Cannabis sativa HOM05D003958 ORTHO05D004864 2.1e-132 476.1 314 74.5
Ca_00876_v3 Cicer arietinum L. HOM05D003958 ORTHO05D004864 6.0e-132 474.6 306 75.8
Psat1g092800 Pisum sativum HOM05D003958 ORTHO05D004864 6.0e-132 474.6 311 75.6
CsaV3_1G037790 Cucumis sativus L. HOM05D003958 ORTHO05D004864 1.0e-131 473.8 309 75.7
Hund02774 Selenicereus undatus HOM05D003958 ORTHO05D004864 1.0e-131 473.8 310 75.5
TPR.G33516 Trifolium pratense HOM05D003958 ORTHO05D004864 1.3e-131 473.4 304 76.3
MELO3C021808.2 Cucumis melo HOM05D003958 ORTHO05D004864 2.3e-131 472.6 309 76.1
TPR.G11724 Trifolium pratense HOM05D003958 ORTHO05D004864 3.0e-131 472.2 310 75.2
vmacro18265 Vaccinium macrocarpon HOM05D003958 ORTHO05D004864 3.0e-131 472.2 329 72.6
Aqoxy2G00425 Aquilegia oxysepala HOM05D003958 ORTHO05D004864 5.1e-131 471.5 311 73.6
Prupe.3G287900 Prunus persica HOM05D003958 ORTHO05D004864 8.6e-131 470.7 310 75.2
Ca_00369_v3 Cicer arietinum L. HOM05D003958 ORTHO05D004864 1.1e-130 470.3 307 74.9
Haze_14701 Corylus avellana HOM05D003958 ORTHO05D004864 1.1e-130 470.3 308 75.3
Nn7g37719 Nelumbo nucifera HOM05D003958 ORTHO05D004864 1.1e-130 470.3 310 73.2
Sabra18G0099100 Salix brachista HOM05D003958 ORTHO05D004864 1.1e-130 470.3 310 74.5
MBI05_g22036_MAGBIO Magnolia biondii HOM05D003958 ORTHO05D004864 1.5e-130 469.9 311 74.0
HanXRQChr09g0255001 Helianthus annuus HOM05D003958 ORTHO05D004864 1.9e-130 469.5 311 73.3
Oeu057051.1 Olea europaea HOM05D003958 ORTHO05D004864 1.9e-130 469.5 307 73.9
PSO832G3613 Papaver somniferum HOM05D003958 ORTHO05D004864 1.9e-130 469.5 312 75.3
THA.LOC104802398 Tarenaya hassleriana HOM05D003958 ORTHO05D004864 1.9e-130 469.5 315 73.3
Lj2g0025561 Lotus japonicus HOM05D003958 ORTHO05D004864 3.3e-130 468.8 310 74.5
TWI12G0059 Tripterygium wilfordii HOM05D003958 ORTHO05D004864 3.3e-130 468.8 310 75.8
EL10Ac9g21169 Beta vulgaris HOM05D003958 ORTHO05D004864 5.6e-130 468.0 311 73.6
Glyma.15G078000 Glycine max HOM05D003958 ORTHO05D004864 9.6e-130 467.2 311 74.9
PSO063G1059 Papaver somniferum HOM05D003958 ORTHO05D004864 9.6e-130 467.2 312 75.0
MSTRG.3157 Avicennia marina HOM05D003958 ORTHO05D004864 2.1e-129 466.1 307 74.3
Cpa.g.sc108.31 Carica papaya HOM05D003958 ORTHO05D004864 2.8e-129 465.7 311 74.3
Glyma.13G234900 Glycine max HOM05D003958 ORTHO05D004864 3.6e-129 465.3 310 75.2
Lsat_1_v5_gn_4_183181 Lactuca sativa HOM05D003958 ORTHO05D004864 8.1e-129 464.2 315 72.7
Aa31LG11G15350 Aethionema arabicum HOM05D003958 ORTHO05D004864 1.1e-128 463.8 320 71.9
Sabra18G0100500 Salix brachista HOM05D003958 ORTHO05D004864 1.4e-128 463.4 310 73.5
Medtr6g047800 Medicago truncatula HOM05D003958 ORTHO05D004864 1.8e-128 463.0 310 74.8
Potri.018G120500 Populus trichocarpa HOM05D003958 ORTHO05D004864 3.1e-128 462.2 310 74.2
Lju41A38T12 Lonicera japonica HOM05D003958 ORTHO05D004864 4.0e-128 461.8 310 73.9
ECA232G3491 Erigeron canadensis HOM05D003958 ORTHO05D004864 5.2e-128 461.5 310 72.3
Psat1g202680 Pisum sativum HOM05D003958 ORTHO05D004864 5.2e-128 461.5 307 73.6
Sabra18G0098500 Salix brachista HOM05D003958 ORTHO05D004864 1.2e-127 460.3 309 73.1
AL6G25360 Arabidopsis lyrata HOM05D003958 ORTHO05D004864 2.0e-127 459.5 320 70.9
AT5G14600 Arabidopsis thaliana HOM05D003958 ORTHO05D004864 2.6e-127 459.1 321 71.0
Carub.0006s1277 Capsella rubella HOM05D003958 ORTHO05D004864 3.4e-127 458.8 319 70.5
Cc02_g12190 Coffea canephora HOM05D003958 ORTHO05D004864 3.4e-127 458.8 308 72.4
CDE06G0036 Ceratophyllum demersum HOM05D003958 ORTHO05D004864 4.4e-127 458.4 311 73.0
CARHR198720 Cardamine hirsuta HOM05D003958 ORTHO05D004864 5.8e-127 458.0 318 70.8
AUR62002487 Chenopodium quinoa HOM05D003958 ORTHO05D004864 1.3e-126 456.8 332 69.6
Migut.H00096 Erythranthe guttata HOM05D003958 ORTHO05D004864 1.7e-126 456.4 307 73.0
Phvul.006G181700 Phaseolus vulgaris HOM05D003958 ORTHO05D004864 2.9e-126 455.7 313 72.8
THA.LOC104821089 Tarenaya hassleriana HOM05D003958 ORTHO05D004864 4.9e-126 454.9 310 71.6
VMungo0540G0822 Vigna mungo HOM05D003958 ORTHO05D004864 8.4e-126 454.1 312 73.1
Thhalv10014133m.g Eutrema salsugineum HOM05D003958 ORTHO05D004864 3.2e-125 452.2 319 70.8
C09p62510 Brassica napus HOM05D003958 ORTHO05D004864 1.0e-123 447.2 321 69.2
Sp6g29430 Schrenkiella parvula HOM05D003958 ORTHO05D004864 1.7e-123 446.4 315 69.5
AUR62023705 Chenopodium quinoa HOM05D003958 ORTHO05D004864 8.7e-123 444.1 300 73.3
Sc03g0007660 Simmondsia chinensis HOM05D003958 ORTHO05D004864 1.1e-122 443.7 311 70.4
A10p24040 Brassica napus HOM05D003958 ORTHO05D004864 2.5e-122 442.6 321 68.2
BraA10t44467Z Brassica rapa HOM05D003958 ORTHO05D004864 4.3e-122 441.8 321 68.5
BolC9t59091H Brassica oleracea HOM05D003958 ORTHO05D004864 5.6e-122 441.4 326 68.1
Sabra18G0101000 Salix brachista HOM05D003958 ORTHO05D004864 2.8e-121 439.1 280 76.1
BcaNung03113 Brassica carinata HOM05D003958 ORTHO05D004864 3.6e-121 438.7 321 68.8
MD09G1029500 Malus domestica HOM05D003958 ORTHO05D004864 3.6e-121 438.7 280 77.5
SGA_v2.0_scaffold196G40937 Striga asiatica HOM05D003958 ORTHO05D004864 6.2e-121 438.0 308 71.1
ATR0057G029 Amborella trichopoda HOM05D003958 ORTHO05D004864 5.3e-120 434.9 310 71.6
Cfa007405 Carpinus fangiana HOM05D003958 ORTHO05D004864 1.7e-118 429.9 247 83.4
Hma1.2p1_0858F.1_g229230 Hydrangea macrophylla HOM05D003958 ORTHO05D004864 2.9e-118 429.1 333 67.9
FAN14G0618 Fragaria x ananassa HOM05D003958 ORTHO05D004864 4.6e-116 421.8 251 81.3
SEGI_01237 Sequoiadendron giganteum HOM05D003958 ORTHO05D004864 6.0e-116 421.4 324 66.4
FAN09G1134 Fragaria x ananassa HOM05D003958 ORTHO05D004864 1.6e-113 413.3 251 80.1
Os04g0319600 Oryza sativa ssp. japonica HOM05D003958 ORTHO05D004864 3.6e-113 412.1 323 65.0
Sabra18G0098900 Salix brachista HOM05D003958 ORTHO05D004864 1.8e-112 409.8 261 75.5
Zm00001eb071120 Zea mays HOM05D003958 ORTHO05D004864 1.8e-112 409.8 321 63.6
Gorai.013G008200 Gossypium raimondii HOM05D003958 ORTHO05D004864 3.1e-112 409.1 305 68.2
BcaC03g13470 Brassica carinata HOM05D003958 ORTHO05D004864 7.6e-111 404.4 309 66.7
arahy.Tifrunner.gnm1.ann1.8Z0BSJ Arachis hypogaea HOM05D003958 ORTHO05D004864 1.6e-108 396.7 306 65.4
MD17G1031500 Malus domestica HOM05D003958 ORTHO05D004864 6.9e-104 381.3 221 83.7
CSS0027303 Camellia sinensis var. sinensis HOM05D003958 ORTHO05D004864 2.5e-101 372.9 308 63.0
HPP92_013732 Vanilla planifolia HOM05D003958 ORTHO05D004864 5.5e-101 371.7 229 76.4
Dinv35088 Davidia involucrata HOM05D003958 ORTHO05D004864 2.1e-100 369.8 310 63.9
Pp3c18_5220 Physcomitrium patens HOM05D003958 ORTHO05D004864 6.0e-100 368.2 332 57.8
SMO361G0280 Selaginella moellendorffii HOM05D003958 ORTHO05D004864 2.3e-99 366.3 307 61.9
SMO361G0823 Selaginella moellendorffii HOM05D003958 ORTHO05D004864 3.9e-99 365.5 307 61.6
AagrBONN_evm.TU.Sc2ySwM_344.690 Anthoceros agrestis HOM05D003958 ORTHO05D004864 1.9e-98 363.2 306 60.5
Mapoly0053s0094 Marchantia polymorpha HOM05D003958 ORTHO05D004864 3.3e-98 362.5 336 54.8
Medtr2g014590 Medicago truncatula HOM05D003958 ORTHO05D004864 1.3e-97 360.5 231 74.5
CBR_g9110 Chara braunii HOM05D003958 ORTHO05D004864 1.1e-85 320.9 250 62.0
arahy.Tifrunner.gnm1.ann1.Z5MU8N Arachis hypogaea HOM05D003958 ORTHO05D004864 2.5e-85 319.7 204 77.0
arahy.Tifrunner.gnm1.ann1.M5ZQAR Arachis hypogaea HOM05D003958 ORTHO05D004864 4.2e-85 318.9 222 72.1
SGA_v2.0_scaffold34G13865 Striga asiatica HOM05D003958 ORTHO05D004864 5.7e-82 308.5 329 52.3
unitig_62.g23558 Utricularia gibba HOM05D003958 ORTHO05D004864 4.7e-76 288.9 207 69.1
MCO10G191 Micromonas commoda HOM05D003958 ORTHO05D004864 1.0e-75 287.7 315 51.1
Cre05.g244236 Chlamydomonas reinhardtii HOM05D003958 ORTHO05D004864 5.7e-74 282.0 238 58.8
Atru.chr6.2249 Acer truncatum HOM05D003958 ORTHO05D004864 9.1e-72 274.6 162 82.1
GSVIVG01032441001 Vitis vinifera HOM05D000462 ORTHO05D002607 2.1e-68 263.5 156 82.7
PRCOL_00006622 Prasinoderma coloniale HOM05D003958 ORTHO05D004864 1.5e-66 257.3 346 43.9
arahy.Tifrunner.gnm1.ann1.FV4QAS Arachis hypogaea HOM05D003958 ORTHO05D004864 2.0e-66 256.9 171 76.6
Eucgr.L02705 Eucalyptus grandis HOM05D003958 ORTHO05D004864 2.6e-66 256.5 169 72.8
Ah.07g203270 Amaranthus hybridus HOM05D003958 ORTHO05D004864 3.5e-63 246.1 150 79.3
Ah.07g203280 Amaranthus hybridus HOM05D003958 ORTHO05D004864 4.0e-59 232.6 161 69.6
Gohir.A10G243400 Gossypium hirsutum HOM05D003958 ORTHO05D004864 3.5e-55 219.5 134 79.1
Haze_26162 Corylus avellana HOM05D003958 ORTHO05D004864 2.3e-51 206.8 287 42.5
Sopen06g018800 Solanum pennellii HOM05D003958 ORTHO05D004864 2.8e-49 199.9 133 75.9
Gohir.A03G000004 Gossypium hirsutum HOM05D003958 ORTHO05D004864 1.2e-47 194.5 112 83.9
Gohir.D11G349300 Gossypium hirsutum HOM05D003958 ORTHO05D004864 4.5e-47 192.6 121 76.0
Gorai.004G293900 Gossypium raimondii HOM05D003958 ORTHO05D004864 5.9e-47 192.2 121 76.0
Gorai.006G274500 Gossypium raimondii HOM05D003958 ORTHO05D004864 5.9e-47 192.2 121 76.0
Gohir.A01G232100 Gossypium hirsutum HOM05D003958 ORTHO05D004864 1.3e-46 191.0 121 75.2
Gohir.D08G275428 Gossypium hirsutum HOM05D003958 ORTHO05D004864 2.3e-46 190.3 121 75.2
Gohir.D09G250100 Gossypium hirsutum HOM05D003958 ORTHO05D004864 2.9e-46 189.9 118 77.1
Gohir.D01G222101 Gossypium hirsutum HOM05D003958 ORTHO05D004864 8.6e-46 188.3 118 76.3
BcaC01g04875 Brassica carinata HOM05D003958 ORTHO05D004864 1.2e-44 184.5 239 47.7
Gorai.007G380200 Gossypium raimondii HOM05D003958 ORTHO05D004864 1.2e-44 184.5 116 75.9
Gorai.N017600 Gossypium raimondii HOM05D003958 ORTHO05D004864 8.0e-44 181.8 118 73.7
Gohir.D03G178200 Gossypium hirsutum HOM05D003958 ORTHO05D004864 1.0e-43 181.4 118 72.9
Gohir.A12G000201 Gossypium hirsutum HOM05D003958 ORTHO05D004864 3.4e-42 176.4 295 42.4
FAN14G4368 Fragaria x ananassa HOM05D000001 ORTHO05D000003 5.9e-39 165.6 155 56.1
Gohir.A06G000101 Gossypium hirsutum HOM05D003958 ORTHO05D004864 5.9e-39 165.6 93 86.0
Gohir.1Z049515 Gossypium hirsutum HOM05D003958 ORTHO05D015143 1.5e-37 161.0 102 74.5
Gorai.006G275300 Gossypium raimondii HOM05D003958 ORTHO05D015143 8.0e-36 155.2 102 71.6
Atru.chr6.2248 Acer truncatum HOM05D003958 ORTHO05D004864 1.1e-29 134.8 89 74.2
Gorai.001G000100 Gossypium raimondii HOM05D003958 ORTHO05D004864 2.5e-29 133.7 84 73.8
FAN05G2568 Fragaria x ananassa HOM05D003958 ORTHO05D004864 3.6e-28 129.8 135 54.1
C03p32750 Brassica napus HOM05D003958 ORTHO05D004864 7.5e-26 122.1 95 62.1
BolC3t15610H Brassica oleracea HOM05D003958 ORTHO05D004864 7.5e-26 122.1 95 62.1
Gohir.D07G000766 Gossypium hirsutum HOM05D003958 ORTHO05D004864 2.3e-22 110.5 92 65.2
Gohir.D11G176600 Gossypium hirsutum HOM05D003958 ORTHO05D004864 3.0e-22 110.2 92 64.1
Gorai.013G272500 Gossypium raimondii HOM05D003958 ORTHO05D004864 3.3e-21 106.7 92 64.1
Gohir.A09G249500 Gossypium hirsutum HOM05D003958 ORTHO05D004864 6.2e-20 102.4 64 78.1
Gohir.1Z049410 Gossypium hirsutum HOM05D003958 ORTHO05D004864 1.4e-19 101.3 64 78.1
CSS0019434 Camellia sinensis var. sinensis HOM05D003958 ORTHO05D004864 2.3e-19 100.5 74 73.0
Gorai.007G000600 Gossypium raimondii HOM05D001392 ORTHO05D014312 1.4e-16 91.3 69 66.7
FAN05G2311 Fragaria x ananassa HOM05D003958 ORTHO05D004864 4.1e-16 89.7 105 49.5
Gohir.D08G275100 Gossypium hirsutum HOM05D003958 ORTHO05D005872 7.1e-16 89.0 50 78.0
Gorai.N025700 Gossypium raimondii HOM05D003958 ORTHO05D005872 7.1e-16 89.0 50 78.0
Gohir.1Z049564 Gossypium hirsutum HOM05D003958 ORTHO05D004864 2.1e-15 87.4 50 76.0
Gohir.1Z049570 Gossypium hirsutum HOM05D003958 ORTHO05D005872 2.1e-15 87.4 50 76.0
Oeu056467.1 Olea europaea HOM05D003958 ORTHO05D004864 3.5e-15 86.7 230 28.3
Gohir.A02G000100 Gossypium hirsutum HOM05D003958 ORTHO05D005454 4.6e-15 86.3 47 76.6
Nitab4.5_0001556g0020 Nicotiana tabacum HOM05D003958 ORTHO05D004864 4.6e-15 86.3 78 59.0
Solyc06g053690.3 Solanum lycopersicum HOM05D003958 ORTHO05D004864 1.7e-14 84.3 62 64.5
BcaC03g13467 Brassica carinata HOM05D002486 ORTHO05D002606 3.2e-08 63.5 153 32.0
AL4G39060 Arabidopsis lyrata HOM05D000001 ORTHO05D009069 4.2e-08 63.2 88 43.2
Medtr2g014570 Medicago truncatula HOM05D003958 ORTHO05D004864 6.0e-07 59.3 62 53.2


User provided reference genes

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