Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR119G1083 Punica granatum HOM05D005654 ORTHO05D006438 1.5e-96 356.3 190 100.0
Eucgr.H02778 Eucalyptus grandis HOM05D005654 ORTHO05D006438 1.6e-55 219.9 193 67.4
QL06p034798 Quercus lobata HOM05D005654 ORTHO05D006438 2.4e-54 216.1 186 65.6
QL10p007390 Quercus lobata HOM05D005654 ORTHO05D006438 2.4e-54 216.1 186 65.6
TWI60G0108 Tripterygium wilfordii HOM05D005654 ORTHO05D006438 6.9e-54 214.5 200 64.0
Gohir.A11G179400 Gossypium hirsutum HOM05D005654 ORTHO05D006438 9.0e-54 214.2 190 65.8
Thecc.01G026300 Theobroma cacao HOM05D005654 ORTHO05D006438 2.2e-52 209.5 191 64.9
GSVIVG01018856001 Vitis vinifera HOM05D005654 ORTHO05D006438 2.2e-52 209.5 190 65.8
COL.COLO4_21992 Corchorus olitorius HOM05D005654 ORTHO05D006438 2.9e-52 209.1 196 62.8
Gohir.D11G187100 Gossypium hirsutum HOM05D005654 ORTHO05D006438 1.1e-51 207.2 190 64.7
ClCG09G019610 Citrullus lanatus HOM05D005654 ORTHO05D006438 1.9e-51 206.5 190 64.2
Gorai.007G199000 Gossypium raimondii HOM05D005654 ORTHO05D006438 1.9e-51 206.5 190 64.7
Dinv33576 Davidia involucrata HOM05D005654 ORTHO05D006438 2.4e-51 206.1 182 64.8
CANSAT01G3286 Cannabis sativa HOM05D005654 ORTHO05D006438 3.2e-51 205.7 190 63.7
CSS0048601 Camellia sinensis var. sinensis HOM05D005654 ORTHO05D006438 4.2e-51 205.3 190 63.7
Sed0005955 Sechium edule HOM05D005654 ORTHO05D006438 7.1e-51 204.5 191 62.3
Hma1.2p1_1114F.1_g258780 Hydrangea macrophylla HOM05D005654 ORTHO05D006438 9.3e-51 204.1 194 63.4
THA.LOC104819191 Tarenaya hassleriana HOM05D005654 ORTHO05D006438 1.2e-50 203.8 189 63.0
Nitab4.5_0007445g0010 Nicotiana tabacum HOM05D005654 ORTHO05D006438 6.0e-50 201.4 194 62.9
QL08p063081 Quercus lobata HOM05D005654 ORTHO05D006438 7.9e-50 201.1 196 61.2
Nitab4.5_0002707g0030 Nicotiana tabacum HOM05D005654 ORTHO05D006438 1.0e-49 200.7 195 62.1
CsaV3_5G027780 Cucumis sativus L. HOM05D005654 ORTHO05D006438 1.7e-49 199.9 191 63.4
Nn1g05784 Nelumbo nucifera HOM05D005654 ORTHO05D006438 2.3e-49 199.5 189 61.4
MELO3C005244.2 Cucumis melo HOM05D005654 ORTHO05D006438 3.0e-49 199.1 191 62.3
Manes.02G099200 Manihot esculenta HOM05D005654 ORTHO05D006438 3.0e-49 199.1 190 62.6
CiPaw.08G137200 Carya illinoinensis HOM05D005654 ORTHO05D006438 3.9e-49 198.7 193 61.7
Cc07_g10180 Coffea canephora HOM05D005654 ORTHO05D006438 3.9e-49 198.7 192 62.5
Lj2A460T79 Lonicera japonica HOM05D005654 ORTHO05D006438 6.6e-49 198.0 197 60.4
Peaxi162Scf00329g00119 Petunia axillaris HOM05D005654 ORTHO05D006438 3.3e-48 195.7 190 61.1
SalBow8G3171 Salvia bowleyana HOM05D005654 ORTHO05D006438 3.3e-48 195.7 189 60.3
TAR381G0206 Trochodendron aralioides HOM05D005654 ORTHO05D006438 4.3e-48 195.3 191 61.8
Actinidia26105 Actinidia chinensis HOM05D005654 ORTHO05D006438 5.6e-48 194.9 190 61.6
Dinv33575 Davidia involucrata HOM05D005654 ORTHO05D006438 4.8e-47 191.8 138 75.4
Sabra07G0015400 Salix brachista HOM05D005654 ORTHO05D006438 1.8e-46 189.9 199 59.8
Lj3g0016616 Lotus japonicus HOM05D005654 ORTHO05D006438 2.4e-46 189.5 194 62.9
Lalb_Chr06g0172541 Lupinus albus HOM05D005654 ORTHO05D006438 2.4e-46 189.5 195 63.1
Sopen04g003980 Solanum pennellii HOM05D005654 ORTHO05D006438 3.1e-46 189.1 194 60.3
MSTRG.23266 Avicennia marina HOM05D005654 ORTHO05D006438 4.0e-46 188.7 187 58.3
FAN07G1349 Fragaria x ananassa HOM05D005654 ORTHO05D006438 4.0e-46 188.7 191 60.7
RcHm_v2.0_Chr6g0277811 Rosa chinensis HOM05D005654 ORTHO05D006438 5.3e-46 188.3 191 61.8
Solyc04g008800.3 Solanum lycopersicum HOM05D005654 ORTHO05D006438 9.0e-46 187.6 194 58.8
Manes.01G140500 Manihot esculenta HOM05D005654 ORTHO05D006438 1.2e-45 187.2 192 60.9
Haze_03832 Corylus avellana HOM05D005654 ORTHO05D006438 1.5e-45 186.8 190 57.9
FAN17G0825 Fragaria x ananassa HOM05D005654 ORTHO05D006438 1.5e-45 186.8 191 60.7
FvH4_2g15150 Fragaria vesca HOM05D005654 ORTHO05D006438 3.4e-45 185.7 193 60.6
Lj5g0021075 Lotus japonicus HOM05D005654 ORTHO05D006438 7.6e-45 184.5 196 58.2
FAN22G0080 Fragaria x ananassa HOM05D005654 ORTHO05D006438 1.3e-44 183.7 191 59.7
Glyma.13G002400 Glycine max HOM05D005654 ORTHO05D006438 1.3e-44 183.7 188 61.7
PSO170G2173 Papaver somniferum HOM05D005654 ORTHO05D006438 1.3e-44 183.7 194 57.2
MD05G1010700 Malus domestica HOM05D005654 ORTHO05D006438 2.2e-44 183.0 195 60.5
PGSC0003DMG400025306 Solanum tuberosum HOM05D005654 ORTHO05D006438 2.2e-44 183.0 191 58.6
Migut.H02503 Erythranthe guttata HOM05D005654 ORTHO05D006438 3.8e-44 182.2 187 57.2
FvH4_4g16440 Fragaria vesca HOM05D005654 ORTHO05D006438 3.8e-44 182.2 191 60.2
FAN12G4326 Fragaria x ananassa HOM05D005654 ORTHO05D006438 3.8e-44 182.2 191 60.2
Lsat_1_v5_gn_9_115780 Lactuca sativa HOM05D005654 ORTHO05D006438 6.4e-44 181.4 199 58.3
Glyma.16G220800 Glycine max HOM05D005654 ORTHO05D006438 8.4e-44 181.0 123 78.9
CAN.G419.13 Capsicum annuum HOM05D005654 ORTHO05D006438 1.1e-43 180.6 200 59.5
Prupe.8G013400 Prunus persica HOM05D005654 ORTHO05D006438 1.1e-43 180.6 201 56.7
Glyma.20G066700 Glycine max HOM05D005654 ORTHO05D006438 1.4e-43 180.3 189 61.9
Aqoxy6G01210 Aquilegia oxysepala HOM05D005654 ORTHO05D006438 9.3e-43 177.6 201 55.7
MD10G1009400 Malus domestica HOM05D005654 ORTHO05D006438 9.3e-43 177.6 191 58.6
AT3G51010 Arabidopsis thaliana HOM05D005654 ORTHO05D006438 1.6e-42 176.8 194 58.8
PSO528G0264 Papaver somniferum HOM05D005654 ORTHO05D006438 2.1e-42 176.4 194 56.7
Oeu021744.2 Olea europaea HOM05D005654 ORTHO05D006438 2.7e-42 176.0 240 50.0
PSO339G4156 Papaver somniferum HOM05D005654 ORTHO05D006438 3.5e-42 175.6 194 55.7
HanXRQChr10g0278901 Helianthus annuus HOM05D005654 ORTHO05D006438 7.9e-42 174.5 127 72.4
Thhalv10010748m.g Eutrema salsugineum HOM05D005654 ORTHO05D006438 1.3e-41 173.7 194 57.7
Ca_14022_v3 Cicer arietinum L. HOM05D005654 ORTHO05D006438 1.8e-41 173.3 196 57.7
VMungo0331G0515 Vigna mungo HOM05D005654 ORTHO05D006438 1.8e-41 173.3 188 58.5
Carub.0005s1741 Capsella rubella HOM05D005654 ORTHO05D006438 2.3e-41 172.9 191 57.6
Oeu035320.1 Olea europaea HOM05D005654 ORTHO05D006438 2.3e-41 172.9 131 71.8
Sc18g0007030 Simmondsia chinensis HOM05D005654 ORTHO05D006438 3.0e-41 172.6 193 58.5
AL5G31430 Arabidopsis lyrata HOM05D005654 ORTHO05D006438 5.1e-41 171.8 191 58.6
BraA09t39870Z Brassica rapa HOM05D005654 ORTHO05D006438 5.1e-41 171.8 191 58.1
A09p44110 Brassica napus HOM05D000363 ORTHO05D006438 8.7e-41 171.0 190 57.9
MBI01_g45163_MAGBIO Magnolia biondii HOM05D005654 ORTHO05D006438 1.5e-40 170.2 199 56.8
BraA03t13914Z Brassica rapa HOM05D000363 ORTHO05D005000 3.3e-40 169.1 190 56.8
Medtr8g077440 Medicago truncatula HOM05D005654 ORTHO05D006438 3.3e-40 169.1 190 58.4
BcaC06g33063 Brassica carinata HOM05D005654 ORTHO05D006438 4.3e-40 168.7 191 56.0
TPR.G24134 Trifolium pratense HOM05D005654 ORTHO05D006438 4.3e-40 168.7 192 57.3
A03p48070 Brassica napus HOM05D000363 ORTHO05D005000 5.6e-40 168.3 190 56.3
Sp5g11200 Schrenkiella parvula HOM05D005654 ORTHO05D006438 5.6e-40 168.3 194 55.7
Phvul.010G058900 Phaseolus vulgaris HOM05D005654 ORTHO05D006438 7.4e-40 167.9 185 57.3
C07p46090 Brassica napus HOM05D000363 ORTHO05D005000 2.1e-39 166.4 190 55.8
BolC7t45125H Brassica oleracea HOM05D000363 ORTHO05D005000 2.1e-39 166.4 190 55.8
SGA_v2.0_scaffold9G04932 Striga asiatica HOM05D005654 ORTHO05D006438 4.8e-39 165.2 122 73.8
ECA248G0981 Erigeron canadensis HOM05D005654 ORTHO05D006438 6.2e-39 164.9 189 56.1
arahy.Tifrunner.gnm1.ann1.IV76VY Arachis hypogaea HOM05D005654 ORTHO05D006438 3.1e-38 162.5 205 53.2
BcaC07g39579 Brassica carinata HOM05D005654 ORTHO05D006438 5.3e-38 161.8 191 56.0
C08p26310 Brassica napus HOM05D005654 ORTHO05D006438 5.3e-38 161.8 191 56.0
Aa31LG4G19130 Aethionema arabicum HOM05D005654 ORTHO05D006438 1.2e-37 160.6 193 52.3
BcaNung00403 Brassica carinata HOM05D005654 ORTHO05D006438 1.5e-37 160.2 194 54.6
BolC8t50249H Brassica oleracea HOM05D005654 ORTHO05D006438 1.5e-37 160.2 191 55.5
BcaB01g00554 Brassica carinata HOM05D005654 ORTHO05D006438 3.4e-37 159.1 196 54.1
Hund00373 Selenicereus undatus HOM05D005654 ORTHO05D006438 6.5e-36 154.8 204 50.5
CDE04G0601 Ceratophyllum demersum HOM05D005654 ORTHO05D006438 8.4e-36 154.5 189 52.4
Lj4A211T64 Lonicera japonica HOM05D005654 ORTHO05D006438 7.1e-35 151.4 201 52.7
CDE12G0226 Ceratophyllum demersum HOM05D005654 ORTHO05D006438 2.1e-34 149.8 189 51.9
Sed0001903 Sechium edule HOM05D005654 ORTHO05D006438 8.7e-33 144.4 95 83.2
arahy.Tifrunner.gnm1.ann1.I9PPQ0 Arachis hypogaea HOM05D005654 ORTHO05D006438 1.1e-32 144.1 190 51.1
Ciclev10003765m.g Citrus clementina HOM05D005654 ORTHO05D006438 1.9e-32 143.3 134 58.2
HPP92_013005 Vanilla planifolia HOM05D005654 ORTHO05D006438 1.9e-32 143.3 125 60.8
AUR62027117 Chenopodium quinoa HOM05D005654 ORTHO05D006438 1.6e-31 140.2 198 51.0
Cpa.g.sc217.22 Carica papaya HOM05D005654 ORTHO05D006438 6.9e-30 134.8 161 53.4
SGA_v2.0_scaffold280G46859 Striga asiatica HOM05D005654 ORTHO05D006438 6.9e-30 134.8 143 53.1
AUR62012893 Chenopodium quinoa HOM05D005654 ORTHO05D006438 9.0e-30 134.4 197 49.2
Potri.007G018300 Populus trichocarpa HOM05D005654 ORTHO05D006438 1.2e-29 134.0 143 58.0
ATR0605G129 Amborella trichopoda HOM05D005654 ORTHO05D006438 1.5e-29 133.7 123 63.4
DCAR_025978 Daucus carota HOM05D005654 ORTHO05D006438 1.0e-28 131.0 191 50.3
Zm00001eb265250 Zea mays HOM05D005654 ORTHO05D006438 1.0e-28 131.0 189 49.7
FAN20G0529 Fragaria x ananassa HOM05D005654 ORTHO05D006438 1.3e-28 130.6 134 60.4
TWI09G1445 Tripterygium wilfordii HOM05D005654 ORTHO05D006438 2.2e-28 129.8 89 79.8
Nn5g29728 Nelumbo nucifera HOM05D005654 ORTHO05D006438 8.4e-28 127.9 135 54.1
Os05g0126200 Oryza sativa ssp. japonica HOM05D005654 ORTHO05D006438 1.2e-26 124.0 127 59.1
Cfa006918 Carpinus fangiana HOM05D005654 ORTHO05D006438 2.7e-26 122.9 96 71.9
EL10Ac9g22080 Beta vulgaris HOM05D005654 ORTHO05D006438 2.3e-25 119.8 254 39.4
Psat0s439g0080 Pisum sativum HOM05D005654 ORTHO05D006438 3.3e-24 115.9 141 52.5
Ah.08g209860 Amaranthus hybridus HOM05D005654 ORTHO05D006438 7.4e-24 114.8 153 49.7
Psat2g190960 Pisum sativum HOM05D005654 ORTHO05D006438 2.2e-23 113.2 135 51.1
CARHR160580 Cardamine hirsuta HOM05D005654 ORTHO05D006438 6.3e-23 111.7 94 69.1
FAN24G1434 Fragaria x ananassa HOM05D005654 ORTHO05D006438 6.9e-22 108.2 170 43.5
Rhsim08G0123600 Rhododendron simsii HOM05D005654 ORTHO05D006438 9.0e-22 107.8 192 44.3
Zm00001eb414250 Zea mays HOM05D005654 ORTHO05D006438 8.5e-20 101.3 96 64.6
unitig_747.g21954 Utricularia gibba HOM05D005654 ORTHO05D006438 7.2e-19 98.2 117 51.3
SEGI_21166 Sequoiadendron giganteum HOM05D005654 ORTHO05D006438 2.8e-15 86.3 76 55.3
Zm00001eb355020 Zea mays HOM05D005654 ORTHO05D006438 8.2e-15 84.7 129 47.3
Lalb_Chr02g0154671 Lupinus albus HOM05D005654 ORTHO05D006438 5.0e-12 75.5 92 46.7
Zm00001eb035810 Zea mays HOM05D005654 ORTHO05D006438 1.1e-11 74.3 81 58.0
MBI01_g11791_MAGBIO Magnolia biondii HOM05D005654 ORTHO05D006438 1.4e-11 73.9 141 41.1
SHI03481 Sapria himalayana HOM05D005654 ORTHO05D006438 2.5e-11 73.2 116 43.1
FAN15G1271 Fragaria x ananassa HOM05D005654 ORTHO05D006438 4.2e-11 72.4 64 71.9
Zm00001eb078300 Zea mays HOM05D000349 ORTHO05D010734 9.4e-11 71.2 81 55.6
Zm00001eb309330 Zea mays HOM05D000349 ORTHO05D006438 9.4e-11 71.2 81 55.6
SHI05467 Sapria himalayana HOM05D005654 ORTHO05D006438 6.1e-10 68.6 74 55.4
Mapoly0001s0539 Marchantia polymorpha HOM05D024399 ORTHO05D023494 6.7e-09 65.1 87 47.1
Zm00001eb093520 Zea mays HOM05D005654 ORTHO05D006438 7.4e-08 61.6 62 58.1
CARHR160590 Cardamine hirsuta HOM05D005654 ORTHO05D006438 1.7e-07 60.5 97 43.3
SHI06070 Sapria himalayana HOM05D005654 ORTHO05D006438 7.0e-06 55.1 98 39.8
Zm00001eb372850 Zea mays HOM05D005654 ORTHO05D006438 9.1e-06 54.7 55 67.3


User provided reference genes

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