Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR119G0894 Punica granatum HOM05D005313 ORTHO05D006317 1.3e-180 636.3 330 100.0
Potri.008G128900 Populus trichocarpa HOM05D005313 ORTHO05D006317 3.5e-154 548.5 330 83.6
Eucgr.G02191 Eucalyptus grandis HOM05D005313 ORTHO05D006317 1.3e-153 546.6 331 85.5
TAR623G0220 Trochodendron aralioides HOM05D005313 ORTHO05D006317 6.6e-153 544.3 330 83.0
TWI31G1405 Tripterygium wilfordii HOM05D005313 ORTHO05D006317 2.5e-152 542.3 330 82.4
Atru.chr9.122 Acer truncatum HOM05D005313 ORTHO05D006317 4.3e-152 541.6 330 82.4
COL.COLO4_20475 Corchorus olitorius HOM05D005313 ORTHO05D006317 1.2e-151 540.0 330 83.6
Gorai.002G179900 Gossypium raimondii HOM05D005313 ORTHO05D006317 2.8e-151 538.9 330 82.7
Gohir.A01G152800 Gossypium hirsutum HOM05D005313 ORTHO05D006317 6.1e-151 537.7 330 83.0
Thecc.02G280500 Theobroma cacao HOM05D005313 ORTHO05D006317 3.1e-150 535.4 330 82.4
Gohir.D01G145600 Gossypium hirsutum HOM05D005313 ORTHO05D006317 4.0e-150 535.0 330 82.1
MD16G1029000 Malus domestica HOM05D005313 ORTHO05D006317 6.8e-150 534.3 330 81.8
RcHm_v2.0_Chr4g0441121 Rosa chinensis HOM05D005313 ORTHO05D006317 6.8e-150 534.3 330 81.8
Manes.17G006600 Manihot esculenta HOM05D005313 ORTHO05D006317 8.9e-150 533.9 330 81.5
FvH4_4g32330 Fragaria vesca HOM05D005313 ORTHO05D006317 3.4e-149 531.9 330 81.2
GSVIVG01011763001 Vitis vinifera HOM05D005313 ORTHO05D006317 4.4e-149 531.6 315 84.8
CSS0048776 Camellia sinensis var. sinensis HOM05D005313 ORTHO05D006317 5.8e-149 531.2 330 82.4
Lj2g0003652 Lotus japonicus HOM05D005313 ORTHO05D006317 5.8e-149 531.2 330 80.9
Lalb_Chr17g0338641 Lupinus albus HOM05D005313 ORTHO05D006317 1.7e-148 529.6 330 80.6
Rhsim02G0199800 Rhododendron simsii HOM05D005313 ORTHO05D006317 2.2e-148 529.3 330 82.4
Prupe.1G323900 Prunus persica HOM05D005313 ORTHO05D006317 2.9e-148 528.9 330 81.5
vmacro10642 Vaccinium macrocarpon HOM05D005313 ORTHO05D006317 3.7e-148 528.5 330 83.0
Lj6A747T68 Lonicera japonica HOM05D005313 ORTHO05D006317 1.4e-147 526.6 330 81.5
FAN17G2517 Fragaria x ananassa HOM05D005313 ORTHO05D006317 2.4e-147 525.8 337 79.5
QL01p001863 Quercus lobata HOM05D005313 ORTHO05D006317 3.2e-147 525.4 315 84.4
FAN22G0311 Fragaria x ananassa HOM05D005313 ORTHO05D006317 9.2e-147 523.9 337 79.2
Oeu024584.1 Olea europaea HOM05D005313 ORTHO05D006317 9.2e-147 523.9 348 78.4
Cfa008602 Carpinus fangiana HOM05D005313 ORTHO05D006317 1.2e-146 523.5 328 82.9
Glyma.09G118600 Glycine max HOM05D005313 ORTHO05D006317 2.7e-146 522.3 330 79.4
Glyma.02G238100 Glycine max HOM05D005313 ORTHO05D006317 7.8e-146 520.8 330 79.4
Psat6g042560 Pisum sativum HOM05D005313 ORTHO05D006317 7.8e-146 520.8 330 80.3
Cc11_g08770 Coffea canephora HOM05D005313 ORTHO05D006317 1.7e-145 519.6 330 80.3
CDE05G1915 Ceratophyllum demersum HOM05D005313 ORTHO05D006317 5.0e-145 518.1 330 78.5
CARHR143870 Cardamine hirsuta HOM05D005313 ORTHO05D006317 8.6e-145 517.3 329 79.3
Phvul.003G023500 Phaseolus vulgaris HOM05D005313 ORTHO05D006317 8.6e-145 517.3 330 79.1
SalBow4G0219 Salvia bowleyana HOM05D005313 ORTHO05D006317 8.6e-145 517.3 330 80.9
THA.LOC104805057 Tarenaya hassleriana HOM05D005313 ORTHO05D006317 1.1e-144 516.9 329 80.2
HanXRQChr15g0488661 Helianthus annuus HOM05D005313 ORTHO05D006317 1.5e-144 516.5 316 81.6
Medtr1g030750 Medicago truncatula HOM05D005313 ORTHO05D006317 1.9e-144 516.2 330 79.1
Sc14g0007170 Simmondsia chinensis HOM05D005313 ORTHO05D006317 1.9e-144 516.2 316 81.6
AT2G01350 Arabidopsis thaliana HOM05D005313 ORTHO05D006317 3.3e-144 515.4 316 81.3
MSTRG.895 Avicennia marina HOM05D005313 ORTHO05D006317 5.6e-144 514.6 330 79.4
Carub.0005s0033 Capsella rubella HOM05D005313 ORTHO05D006317 5.6e-144 514.6 331 79.2
FAN07G2253 Fragaria x ananassa HOM05D005313 ORTHO05D006317 7.3e-144 514.2 355 74.9
Thhalv10000908m.g Eutrema salsugineum HOM05D005313 ORTHO05D006317 1.2e-143 513.5 317 81.1
PSO384G2037 Papaver somniferum HOM05D005313 ORTHO05D006317 1.2e-143 513.5 320 79.7
BcaB07g30404 Brassica carinata HOM05D005313 ORTHO05D006317 2.1e-143 512.7 329 79.3
Nitab4.5_0000742g0010 Nicotiana tabacum HOM05D005313 ORTHO05D006317 2.1e-143 512.7 330 80.0
CANSAT01G3269 Cannabis sativa HOM05D005313 ORTHO05D006317 3.6e-143 511.9 316 81.6
VMungo1215G0481 Vigna mungo HOM05D005313 ORTHO05D006317 4.7e-143 511.5 316 80.7
AL5G10310 Arabidopsis lyrata HOM05D005313 ORTHO05D006317 1.1e-142 510.4 316 80.7
Sp2g12800 Schrenkiella parvula HOM05D005313 ORTHO05D006317 1.8e-142 509.6 317 80.8
CsaV3_5G013570 Cucumis sativus L. HOM05D005313 ORTHO05D006317 2.3e-142 509.2 330 77.9
MELO3C018332.2 Cucumis melo HOM05D005313 ORTHO05D006317 3.1e-142 508.8 330 77.6
Sabra08G0097700 Salix brachista HOM05D005313 ORTHO05D006317 6.8e-142 507.7 391 69.3
A02p31910 Brassica napus HOM05D005313 ORTHO05D006317 8.9e-142 507.3 329 79.0
BraA02t08201Z Brassica rapa HOM05D005313 ORTHO05D006317 8.9e-142 507.3 329 79.0
PSO339G3364 Papaver somniferum HOM05D005313 ORTHO05D006317 8.9e-142 507.3 320 79.1
AUR62017725 Chenopodium quinoa HOM05D005313 ORTHO05D006317 1.2e-141 506.9 311 81.7
Peaxi162Scf00159g00112 Petunia axillaris HOM05D005313 ORTHO05D006317 1.2e-141 506.9 330 80.0
C02p49400 Brassica napus HOM05D005313 ORTHO05D006317 2.0e-141 506.1 331 78.5
BcaC03g17029 Brassica carinata HOM05D005313 ORTHO05D006317 4.4e-141 505.0 329 78.4
ECA246G2448 Erigeron canadensis HOM05D005313 ORTHO05D006317 4.4e-141 505.0 331 77.6
BolC2t11026H Brassica oleracea HOM05D005313 ORTHO05D006317 5.8e-141 504.6 329 78.4
Aqoxy1G00025 Aquilegia oxysepala HOM05D005313 ORTHO05D006317 7.5e-141 504.2 313 80.8
Solyc05g008180.3 Solanum lycopersicum HOM05D005313 ORTHO05D006317 9.8e-141 503.8 330 78.8
Aa31LG2G8560 Aethionema arabicum HOM05D005313 ORTHO05D006317 1.3e-140 503.4 341 76.5
Lsat_1_v5_gn_3_54641 Lactuca sativa HOM05D005313 ORTHO05D006317 1.3e-140 503.4 330 77.0
Sopen05g004020 Solanum pennellii HOM05D005313 ORTHO05D006317 1.3e-140 503.4 330 78.8
Peaxi162Scf00450g00614 Petunia axillaris HOM05D005313 ORTHO05D006317 1.7e-140 503.1 311 82.3
Sed0021241 Sechium edule HOM05D005313 ORTHO05D006317 1.7e-140 503.1 330 77.3
EL10Ac7g15995 Beta vulgaris HOM05D005313 ORTHO05D006317 2.2e-140 502.7 311 81.0
PGSC0003DMG400030501 Solanum tuberosum HOM05D005313 ORTHO05D006317 2.9e-140 502.3 318 80.8
Hund08629 Selenicereus undatus HOM05D005313 ORTHO05D006317 3.7e-140 501.9 311 81.0
Ca_25713_v3 Cicer arietinum L. HOM05D005313 ORTHO05D006317 8.3e-140 500.7 364 71.7
Os09g0553600 Oryza sativa ssp. japonica HOM05D005313 ORTHO05D006317 2.8e-135 485.7 313 76.7
Zm00001eb104420 Zea mays HOM05D005313 ORTHO05D006317 3.6e-135 485.3 313 76.0
HPP92_025383 Vanilla planifolia HOM05D005313 ORTHO05D006317 8.1e-135 484.2 318 74.8
AUR62032955 Chenopodium quinoa HOM05D005313 ORTHO05D006317 5.2e-134 481.5 353 71.7
Duzib248G1582 Durio zibethinus HOM05D005313 ORTHO05D006317 8.9e-134 480.7 330 75.8
Dinv17424 Davidia involucrata HOM05D005313 ORTHO05D006317 2.2e-132 476.1 297 81.1
Ah.01g012630 Amaranthus hybridus HOM05D005313 ORTHO05D006317 2.7e-130 469.2 307 78.5
Haze_11011 Corylus avellana HOM05D005313 ORTHO05D006317 1.3e-129 466.8 283 83.0
SGA_v2.0_scaffold50G18517 Striga asiatica HOM05D005313 ORTHO05D006317 6.6e-129 464.5 330 73.9
Cpa.g.sc65.129 Carica papaya HOM05D005313 ORTHO05D006317 3.3e-128 462.2 330 73.6
SalBow4G0808 Salvia bowleyana HOM05D005313 ORTHO05D006317 4.3e-128 461.8 297 79.8
CAN.G1334.2 Capsicum annuum HOM05D005313 ORTHO05D006317 1.2e-127 460.3 289 82.0
BcaC03g17031 Brassica carinata HOM05D005313 ORTHO05D006317 6.2e-127 458.0 329 73.6
Pp3c8_18030 Physcomitrium patens HOM05D005313 ORTHO05D006317 6.2e-127 458.0 313 73.2
FAN12G1743 Fragaria x ananassa HOM05D005313 ORTHO05D006317 7.6e-125 451.1 384 64.3
Ciclev10018157m.g Citrus clementina HOM05D005313 ORTHO05D006317 1.1e-123 447.2 270 83.0
Duzib248G1474 Durio zibethinus HOM05D005313 ORTHO05D006317 3.2e-123 445.7 277 80.9
CiPaw.06G012200 Carya illinoinensis HOM05D005313 ORTHO05D006317 1.6e-119 433.3 288 76.4
unitig_0.g2330 Utricularia gibba HOM05D005313 ORTHO05D006317 2.1e-119 433.0 338 68.0
Migut.L00987 Erythranthe guttata HOM05D005313 ORTHO05D006317 9.9e-117 424.1 275 78.2
Nn2g15695 Nelumbo nucifera HOM05D005313 ORTHO05D006317 2.9e-116 422.5 329 69.6
SMO164G0169 Selaginella moellendorffii HOM05D005313 ORTHO05D006317 1.9e-115 419.9 317 68.1
Mapoly0011s0070 Marchantia polymorpha HOM05D005313 ORTHO05D006317 2.5e-112 409.5 301 66.8
arahy.Tifrunner.gnm1.ann1.Y1EHRK Arachis hypogaea HOM05D005313 ORTHO05D006317 1.8e-110 403.3 330 65.2
arahy.Tifrunner.gnm1.ann1.G5QWBZ Arachis hypogaea HOM05D005313 ORTHO05D006317 4.5e-109 398.7 339 64.0
CBR_g30917 Chara braunii HOM05D005313 ORTHO05D006317 1.1e-107 394.0 331 63.1
Nitab4.5_0004816g0010 Nicotiana tabacum HOM05D005313 ORTHO05D006317 1.6e-106 390.2 242 83.5
SEGI_23840 Sequoiadendron giganteum HOM05D005313 ORTHO05D006317 1.5e-104 383.6 255 76.1
DCAR_023608 Daucus carota HOM05D005313 ORTHO05D006317 2.7e-98 362.8 221 82.4
Ca_12605_v3 Cicer arietinum L. HOM05D005313 ORTHO05D006317 3.2e-91 339.3 217 77.4
MCO15G382 Micromonas commoda HOM05D005313 ORTHO05D006317 2.5e-88 329.7 320 55.9
AagrBONN_evm.TU.Sc2ySwM_117.3802 Anthoceros agrestis HOM05D005313 ORTHO05D006317 7.2e-83 311.6 230 68.7
ATR0807G196 Amborella trichopoda HOM05D005313 ORTHO05D006317 1.0e-81 307.8 192 81.8
Cre02.g141200 Chlamydomonas reinhardtii HOM05D005313 ORTHO05D006317 4.3e-80 302.4 308 55.8
PRCOL_00006420 Prasinoderma coloniale HOM05D005313 ORTHO05D006317 7.4e-80 301.6 302 54.3
ClCG07G006260 Citrullus lanatus HOM05D005313 ORTHO05D006317 2.4e-78 296.6 187 80.2
Zm00001eb320780 Zea mays HOM05D005313 ORTHO05D006317 1.9e-75 287.0 220 66.4
Potri.010G113500 Populus trichocarpa HOM05D005313 ORTHO05D006317 5.0e-68 262.3 206 63.6
Dinv05167 Davidia involucrata HOM05D005313 ORTHO05D006317 8.5e-68 261.5 167 80.8
Migut.L00982 Erythranthe guttata HOM05D005313 ORTHO05D006317 2.0e-61 240.4 330 46.4
CsaV3_UNG236450 Cucumis sativus L. HOM05D005313 ORTHO05D006317 7.2e-59 231.9 285 47.7
Actinidia26811 Actinidia chinensis HOM05D005313 ORTHO05D006317 4.0e-57 226.1 151 76.8
SHI04677 Sapria himalayana HOM05D005313 ORTHO05D006317 8.5e-52 208.4 186 61.3
SHI04675 Sapria himalayana HOM05D005313 ORTHO05D006317 5.4e-46 189.1 123 74.8
A06p44480 Brassica napus HOM05D005313 ORTHO05D006317 2.3e-44 183.7 240 50.4
AagrBONN_evm.TU.Sc2ySwM_368.1836 Anthoceros agrestis HOM05D005313 ORTHO05D006317 1.4e-38 164.5 122 63.9
Sabra10G0083500 Salix brachista HOM05D005313 ORTHO05D006317 1.2e-37 161.4 266 40.6
Ca_31307_v3 Cicer arietinum L. HOM05D005313 ORTHO05D006317 1.0e-36 158.3 280 36.1
RcHm_v2.0_Chr2g0157601 Rosa chinensis HOM05D005313 ORTHO05D006317 1.7e-36 157.5 123 64.2
Actinidia14964 Actinidia chinensis HOM05D005313 ORTHO05D006317 3.3e-35 153.3 265 39.6
ClCG07G006250 Citrullus lanatus HOM05D005313 ORTHO05D006317 5.6e-35 152.5 110 65.5
Oeu045874.1 Olea europaea HOM05D005313 ORTHO05D006317 9.8e-32 141.7 243 42.0
COL.COLO4_10085 Corchorus olitorius HOM05D005313 ORTHO05D006317 2.0e-29 134.0 85 71.8
TPR.G36891 Trifolium pratense HOM05D005313 ORTHO05D006317 3.3e-27 126.7 101 67.3
Glyma.07G165500 Glycine max HOM05D005313 ORTHO05D006317 1.2e-24 118.2 81 72.8
CSS0042289 Camellia sinensis var. sinensis HOM05D005313 ORTHO05D006317 5.1e-20 102.8 114 56.1
TPR.G36912 Trifolium pratense HOM05D005313 ORTHO05D006317 5.6e-19 99.4 69 66.7
MBI06_g07791_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 4.7e-18 96.3 59 84.7
CAN.G1020.2 Capsicum annuum HOM05D005313 ORTHO05D006317 6.2e-18 95.9 113 49.6
COL.COLO4_10084 Corchorus olitorius HOM05D005313 ORTHO05D006317 8.1e-18 95.5 53 84.9
Aa31LG11G8270 Aethionema arabicum HOM05D005313 ORTHO05D006317 8.9e-17 92.0 88 60.2
CsaV3_UNG236470 Cucumis sativus L. HOM05D005313 ORTHO05D006317 9.9e-16 88.6 60 75.0
Aa31LG11G8280 Aethionema arabicum HOM05D005313 ORTHO05D006317 6.4e-15 85.9 62 66.1
BcaC06g31315 Brassica carinata HOM05D005313 ORTHO05D006317 2.7e-13 80.5 55 67.3
Actinidia01955 Actinidia chinensis HOM05D005313 ORTHO05D006317 3.3e-11 73.6 43 81.4
AagrBONN_evm.TU.Sc2ySwM_117.3801 Anthoceros agrestis HOM05D005313 ORTHO05D006317 1.7e-07 61.2 36 69.4
Oeu045873.1 Olea europaea HOM05D005313 ORTHO05D006317 3.2e-06 57.0 34 79.4


User provided reference genes

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