Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR119G0776 Punica granatum HOM05D004722 ORTHO05D005453 1.8e-45 185.7 102 100.0
HanXRQChr11g0344951 Helianthus annuus HOM05D004722 ORTHO05D005453 2.3e-16 89.0 68 70.6
Lsat_1_v5_gn_1_68380 Lactuca sativa HOM05D004722 ORTHO05D005453 2.6e-15 85.5 98 55.1
COL.COLO4_10444 Corchorus olitorius HOM05D004722 ORTHO05D005453 3.4e-15 85.1 73 68.5
Duzib114G0602 Durio zibethinus HOM05D004722 ORTHO05D005453 4.4e-15 84.7 79 63.3
TWI60G0560 Tripterygium wilfordii HOM05D004722 ORTHO05D005453 5.8e-15 84.3 70 65.7
Eucgr.B02611 Eucalyptus grandis HOM05D004722 ORTHO05D005453 2.2e-14 82.4 85 63.5
COL.COLO4_35454 Corchorus olitorius HOM05D004722 ORTHO05D005453 2.9e-14 82.0 89 57.3
GSVIVG01025254001 Vitis vinifera HOM05D004722 ORTHO05D005453 2.9e-14 82.0 85 62.4
Thecc.09G215900 Theobroma cacao HOM05D004722 ORTHO05D005453 3.7e-14 81.6 91 59.3
Thecc.10G172000 Theobroma cacao HOM05D004722 ORTHO05D005453 4.9e-14 81.3 90 58.9
Aqoxy2G00098 Aquilegia oxysepala HOM05D004722 ORTHO05D005453 1.8e-13 79.3 82 56.1
Aqoxy3G01856 Aquilegia oxysepala HOM05D004722 ORTHO05D005453 1.8e-13 79.3 82 56.1
CSS0019909 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 4.1e-13 78.2 76 57.9
Eucgr.B03635 Eucalyptus grandis HOM05D004722 ORTHO05D005453 4.1e-13 78.2 65 67.7
PGR102G1407 Punica granatum HOM05D004722 ORTHO05D005453 4.1e-13 78.2 77 54.5
RhsimUnG0154700 Rhododendron simsii HOM05D004722 ORTHO05D005453 5.4e-13 77.8 66 66.7
Ciclev10033110m.g Citrus clementina HOM05D004722 ORTHO05D005453 7.0e-13 77.4 88 56.8
TAR633G0462 Trochodendron aralioides HOM05D004722 ORTHO05D005453 9.2e-13 77.0 63 73.0
Atru.chr3.2177 Acer truncatum HOM05D004722 ORTHO05D005453 1.2e-12 76.6 63 66.7
CSS0030536 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 1.2e-12 76.6 64 67.2
MD00G1055400 Malus domestica HOM05D004722 ORTHO05D005453 1.2e-12 76.6 69 66.7
MD02G1319500 Malus domestica HOM05D004722 ORTHO05D005453 1.2e-12 76.6 69 65.2
Rhsim13G0228000 Rhododendron simsii HOM05D004722 ORTHO05D005453 1.2e-12 76.6 66 65.2
TAR636G1609 Trochodendron aralioides HOM05D004722 ORTHO05D005453 1.2e-12 76.6 65 69.2
arahy.Tifrunner.gnm1.ann1.3B9L35 Arachis hypogaea HOM05D004722 ORTHO05D005453 1.6e-12 76.3 66 66.7
MELO3C023928.2 Cucumis melo HOM05D004722 ORTHO05D005453 2.0e-12 75.9 68 63.2
FAN01G1424 Fragaria x ananassa HOM05D000082 ORTHO05D005453 2.0e-12 75.9 67 65.7
Phvul.005G042200 Phaseolus vulgaris HOM05D004722 ORTHO05D005453 2.0e-12 75.9 63 69.8
ClCG10G012700 Citrullus lanatus HOM05D004722 ORTHO05D005453 2.7e-12 75.5 88 52.3
Medtr2g061780 Medicago truncatula HOM05D004722 ORTHO05D005453 2.7e-12 75.5 66 68.2
Prupe.2G002500 Prunus persica HOM05D004722 ORTHO05D005453 2.7e-12 75.5 78 59.0
Sed0000285 Sechium edule HOM05D004722 ORTHO05D005453 2.7e-12 75.5 70 61.4
Atru.chr11.2706 Acer truncatum HOM05D004722 ORTHO05D005453 3.5e-12 75.1 80 60.0
Glyma.15G268200 Glycine max HOM05D004722 ORTHO05D005453 3.5e-12 75.1 63 68.3
TAR636G0988 Trochodendron aralioides HOM05D004722 ORTHO05D005453 3.5e-12 75.1 65 67.7
CSS0019299 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 4.6e-12 74.7 66 63.6
Cc02_g26900 Coffea canephora HOM05D004722 ORTHO05D005453 4.6e-12 74.7 92 52.2
Gohir.A05G401550 Gossypium hirsutum HOM05D004722 ORTHO05D005453 4.6e-12 74.7 78 61.5
Gohir.D04G014200 Gossypium hirsutum HOM05D004722 ORTHO05D005453 4.6e-12 74.7 78 61.5
Gorai.012G016800 Gossypium raimondii HOM05D004722 ORTHO05D005453 4.6e-12 74.7 78 61.5
Actinidia05843 Actinidia chinensis HOM05D004722 ORTHO05D005453 6.0e-12 74.3 62 66.1
Aa31LG1G19080 Aethionema arabicum HOM05D004722 ORTHO05D005453 6.0e-12 74.3 71 60.6
CSS0017159 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 6.0e-12 74.3 66 62.1
RcHm_v2.0_Chr1g0313231 Rosa chinensis HOM05D004722 ORTHO05D005453 7.8e-12 73.9 67 64.2
CSS0018564 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 1.0e-11 73.6 66 62.1
HanXRQChr01g0021201 Helianthus annuus HOM05D004722 ORTHO05D005453 1.0e-11 73.6 69 63.8
Lalb_Chr25g0283671 Lupinus albus HOM05D004722 ORTHO05D005453 1.0e-11 73.6 62 67.7
TPR.G16145 Trifolium pratense HOM05D004722 ORTHO05D005453 1.0e-11 73.6 66 66.7
CANSAT11G0834 Cannabis sativa HOM05D004722 ORTHO05D005453 1.3e-11 73.2 80 51.2
Psat1g129080 Pisum sativum HOM05D004722 ORTHO05D005453 1.3e-11 73.2 67 62.7
Potri.009G024300 Populus trichocarpa HOM05D004722 ORTHO05D005453 1.3e-11 73.2 67 62.7
THA.LOC104800946 Tarenaya hassleriana HOM05D004722 ORTHO05D005453 1.3e-11 73.2 82 52.4
Gohir.A13G005400 Gossypium hirsutum HOM05D004722 ORTHO05D005453 1.7e-11 72.8 69 68.1
Gorai.013G005600 Gossypium raimondii HOM05D004722 ORTHO05D005453 1.7e-11 72.8 68 66.2
Cfa010708 Carpinus fangiana HOM05D004722 ORTHO05D005453 2.3e-11 72.4 63 65.1
CiPaw.13G035000 Carya illinoinensis HOM05D004722 ORTHO05D005453 2.3e-11 72.4 69 58.0
DCAR_023306 Daucus carota HOM05D004722 ORTHO05D005453 2.3e-11 72.4 71 57.7
Glyma.08G158100 Glycine max HOM05D004722 ORTHO05D005453 2.3e-11 72.4 67 64.2
Hma1.2p1_1373F.1_g278710 Hydrangea macrophylla HOM05D004722 ORTHO05D005453 2.3e-11 72.4 66 62.1
Hma1.2p1_2663F.1_g326415 Hydrangea macrophylla HOM05D004722 ORTHO05D005453 2.3e-11 72.4 66 62.1
CARHR005060 Cardamine hirsuta HOM05D004722 ORTHO05D005453 3.0e-11 72.0 76 56.6
PSO339G1234 Papaver somniferum HOM05D004722 ORTHO05D005453 3.0e-11 72.0 78 55.1
Sed0020970 Sechium edule HOM05D004722 ORTHO05D005453 3.0e-11 72.0 61 67.2
Haze_03270 Corylus avellana HOM05D004722 ORTHO05D005453 3.9e-11 71.6 63 65.1
DCAR_027044 Daucus carota HOM05D004722 ORTHO05D005453 3.9e-11 71.6 68 60.3
DCAR_027045 Daucus carota HOM05D004722 ORTHO05D005453 3.9e-11 71.6 73 56.2
BcaC02g11308 Brassica carinata HOM05D004722 ORTHO05D005453 5.0e-11 71.2 69 58.0
A05p13590 Brassica napus HOM05D004722 ORTHO05D005453 5.0e-11 71.2 69 58.0
C04p17690 Brassica napus HOM05D004722 ORTHO05D005453 5.0e-11 71.2 69 58.0
BolC4t23317H Brassica oleracea HOM05D004722 ORTHO05D005453 5.0e-11 71.2 69 58.0
BraA05t20296Z Brassica rapa HOM05D004722 ORTHO05D005453 5.0e-11 71.2 69 58.0
CAN.G129.50 Capsicum annuum HOM05D004722 ORTHO05D005453 5.0e-11 71.2 67 61.2
Ca_03203_v3 Cicer arietinum L. HOM05D004722 ORTHO05D005453 5.0e-11 71.2 71 60.6
Potri.001G010600 Populus trichocarpa HOM05D004722 ORTHO05D005453 5.0e-11 71.2 66 65.2
Atru.chr3.2176 Acer truncatum HOM05D004722 ORTHO05D005453 6.6e-11 70.9 50 76.0
Hma1.2p1_0541F.1_g174840 Hydrangea macrophylla HOM05D004722 ORTHO05D005453 6.6e-11 70.9 71 57.7
Ciclev10017204m.g Citrus clementina HOM05D004722 ORTHO05D005453 8.6e-11 70.5 81 56.8
Cc02_g26920 Coffea canephora HOM05D004722 ORTHO05D005453 8.6e-11 70.5 86 52.3
Peaxi162Scf00245g00096 Petunia axillaris HOM05D004722 ORTHO05D005453 8.6e-11 70.5 69 55.1
Solyc01g073720.2 Solanum lycopersicum HOM05D004722 ORTHO05D005453 8.6e-11 70.5 67 59.7
Sopen01g033290 Solanum pennellii HOM05D004722 ORTHO05D005453 1.1e-10 70.1 67 59.7
PGSC0003DMG400028984 Solanum tuberosum HOM05D004722 ORTHO05D005453 1.1e-10 70.1 67 59.7
vmacro13608 Vaccinium macrocarpon HOM05D004722 ORTHO05D005453 1.1e-10 70.1 65 58.5
Gohir.D13G005100 Gossypium hirsutum HOM05D004722 ORTHO05D005453 1.5e-10 69.7 64 65.6
ECA236G3701 Erigeron canadensis HOM05D004722 ORTHO05D005453 1.9e-10 69.3 72 56.9
Sabra09G0015700 Salix brachista HOM05D004722 ORTHO05D005453 1.9e-10 69.3 65 61.5
PGSC0003DMG400028988 Solanum tuberosum HOM05D004722 ORTHO05D005453 1.9e-10 69.3 78 52.6
Zm00001eb193270 Zea mays HOM05D004722 ORTHO05D005453 1.9e-10 69.3 71 57.7
AT1G05575 Arabidopsis thaliana HOM05D004722 ORTHO05D005453 2.5e-10 68.9 64 59.4
DCAR_029591 Daucus carota HOM05D004722 ORTHO05D005453 2.5e-10 68.9 73 54.8
Migut.N01655 Erythranthe guttata HOM05D004722 ORTHO05D005453 2.5e-10 68.9 73 56.2
Potri.003G215300 Populus trichocarpa HOM05D004722 ORTHO05D005453 2.5e-10 68.9 66 62.1
Thhalv10017532m.g Eutrema salsugineum HOM05D004722 ORTHO05D005453 3.3e-10 68.6 86 46.5
MD11G1015000 Malus domestica HOM05D004722 ORTHO05D005453 3.3e-10 68.6 68 61.8
Prupe.6G012500 Prunus persica HOM05D004722 ORTHO05D005453 3.3e-10 68.6 68 57.4
AL1G15450 Arabidopsis lyrata HOM05D004722 ORTHO05D005453 4.3e-10 68.2 64 59.4
Carub.0004s1325 Capsella rubella HOM05D004722 ORTHO05D005453 4.3e-10 68.2 68 58.8
AT2G31945 Arabidopsis thaliana HOM05D004722 ORTHO05D005453 5.6e-10 67.8 66 57.6
Rhsim07G0049700 Rhododendron simsii HOM05D004722 ORTHO05D005453 5.6e-10 67.8 63 61.9
BcaB02g06840 Brassica carinata HOM05D004722 ORTHO05D005453 7.3e-10 67.4 73 56.2
BcaC05g24363 Brassica carinata HOM05D004722 ORTHO05D005453 7.3e-10 67.4 70 54.3
Sp4g14310 Schrenkiella parvula HOM05D004722 ORTHO05D005453 7.3e-10 67.4 68 57.4
Lj3g0007026 Lotus japonicus HOM05D004722 ORTHO05D005453 1.2e-09 66.6 64 67.2
MD03G1011900 Malus domestica HOM05D004722 ORTHO05D005453 1.2e-09 66.6 57 66.7
Nn7g35982 Nelumbo nucifera HOM05D004722 ORTHO05D005453 1.2e-09 66.6 67 64.2
SalBow4G0008 Salvia bowleyana HOM05D004722 ORTHO05D005453 1.2e-09 66.6 74 54.1
Sopen01g033320 Solanum pennellii HOM05D004722 ORTHO05D005453 1.2e-09 66.6 80 47.5
BraA10t42701Z Brassica rapa HOM05D000875 ORTHO05D000684 1.6e-09 66.2 67 59.7
Nitab4.5_0000468g0090 Nicotiana tabacum HOM05D004722 ORTHO05D005453 1.6e-09 66.2 67 56.7
Ah.06g190970 Amaranthus hybridus HOM05D004722 ORTHO05D005453 2.1e-09 65.9 82 51.2
Nn2g15722 Nelumbo nucifera HOM05D004722 ORTHO05D005453 2.1e-09 65.9 70 58.6
BolC5t29171H Brassica oleracea HOM05D004722 ORTHO05D005453 2.8e-09 65.5 64 59.4
Os06g0207200 Oryza sativa ssp. japonica HOM05D004722 ORTHO05D005453 2.8e-09 65.5 87 50.6
Potri.001G230900 Populus trichocarpa HOM05D004722 ORTHO05D005453 2.8e-09 65.5 66 60.6
HanXRQChr15g0480671 Helianthus annuus HOM05D004722 ORTHO05D005453 3.6e-09 65.1 73 50.7
Peaxi162Scf00402g00810 Petunia axillaris HOM05D004722 ORTHO05D005453 3.6e-09 65.1 60 61.7
RcHm_v2.0_Chr5g0081201 Rosa chinensis HOM05D004722 ORTHO05D005453 3.6e-09 65.1 76 57.9
A10p04290 Brassica napus HOM05D004722 ORTHO05D005453 6.2e-09 64.3 64 59.4
BraA10t42697Z Brassica rapa HOM05D004722 ORTHO05D005453 6.2e-09 64.3 64 59.4
Nitab4.5_0009236g0010 Nicotiana tabacum HOM05D004722 ORTHO05D005453 6.2e-09 64.3 69 53.6
SalBow4G0755 Salvia bowleyana HOM05D004722 ORTHO05D005453 6.2e-09 64.3 72 54.2
Manes.10G152300 Manihot esculenta HOM05D004722 ORTHO05D005453 8.0e-09 63.9 63 60.3
Sabra16G0138300 Salix brachista HOM05D004722 ORTHO05D005453 8.0e-09 63.9 66 59.1
Carub.0001s0489 Capsella rubella HOM05D004722 ORTHO05D005453 1.8e-08 62.8 76 51.3
Zm00001eb100710 Zea mays HOM05D004722 ORTHO05D005453 1.8e-08 62.8 73 54.8
AL4G27260 Arabidopsis lyrata HOM05D004722 ORTHO05D005453 2.3e-08 62.4 68 52.9
AL80U10030 Arabidopsis lyrata HOM05D004722 ORTHO05D005453 2.3e-08 62.4 68 52.9
Lalb_Chr01g0014951 Lupinus albus HOM05D004722 ORTHO05D005453 3.1e-08 62.0 61 60.7
Os02g0774200 Oryza sativa ssp. japonica HOM05D004722 ORTHO05D005453 3.1e-08 62.0 82 48.8
Oeu034890.1 Olea europaea HOM05D004722 ORTHO05D005453 4.0e-08 61.6 63 55.6
QL04p001566 Quercus lobata HOM05D004722 ORTHO05D005453 4.0e-08 61.6 53 64.2
EL10Ac4g09614 Beta vulgaris HOM05D004722 ORTHO05D005453 8.9e-08 60.5 60 53.3
Zm00001eb373570 Zea mays HOM05D004722 ORTHO05D005453 8.9e-08 60.5 76 52.6
EL10Ac4g09615 Beta vulgaris HOM05D004722 ORTHO05D005453 1.2e-07 60.1 71 50.7
Zm00001eb100700 Zea mays HOM05D004722 ORTHO05D005453 1.2e-07 60.1 82 52.4
FvH4_3g44500 Fragaria vesca HOM05D004722 ORTHO05D005453 1.5e-07 59.7 76 55.3
FAN11G3093 Fragaria x ananassa HOM05D004722 ORTHO05D005453 1.5e-07 59.7 76 55.3
Gohir.A10G182200 Gossypium hirsutum HOM05D004722 ORTHO05D005453 2.0e-07 59.3 89 49.4
Os09g0446700 Oryza sativa ssp. japonica HOM05D004722 ORTHO05D005453 2.0e-07 59.3 75 52.0
Cpa.g.sc189.2 Carica papaya HOM05D004722 ORTHO05D005453 3.4e-07 58.5 62 54.8
Oeu032785.1 Olea europaea HOM05D004722 ORTHO05D005453 3.4e-07 58.5 82 50.0
Cpa.g.sc119.96 Carica papaya HOM05D004722 ORTHO05D005453 4.4e-07 58.2 59 57.6
Sc06g0004360 Simmondsia chinensis HOM05D004722 ORTHO05D005453 4.4e-07 58.2 61 52.5
Gorai.011G212200 Gossypium raimondii HOM05D004722 ORTHO05D005453 2.2e-06 55.8 89 47.2
EL10Ac4g09616 Beta vulgaris HOM05D004722 ORTHO05D005453 2.9e-06 55.5 54 51.9
ClCG09G003700 Citrullus lanatus HOM05D004722 ORTHO05D005453 3.7e-06 55.1 63 54.0
Sed0018607 Sechium edule HOM05D004722 ORTHO05D005453 3.7e-06 55.1 81 50.6


User provided reference genes

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