Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR119G0742 Punica granatum HOM05D004453 ORTHO05D005375 2.8e-152 542.0 284 100.0
Eucgr.J01746 Eucalyptus grandis HOM05D004453 ORTHO05D005375 8.6e-85 317.8 238 72.3
Dinv03791 Davidia involucrata HOM05D004453 ORTHO05D005375 9.5e-84 314.3 239 72.4
QL01p007925 Quercus lobata HOM05D004453 ORTHO05D005375 4.0e-82 308.9 239 71.5
Cfa009532 Carpinus fangiana HOM05D004453 ORTHO05D005375 6.8e-82 308.1 236 72.9
GSVIVG01025506001 Vitis vinifera HOM05D004453 ORTHO05D005375 2.6e-81 306.2 237 71.3
Cpa.g.sc119.21 Carica papaya HOM05D004453 ORTHO05D005375 1.3e-80 303.9 214 79.0
Ciclev10016282m.g Citrus clementina HOM05D004453 ORTHO05D005375 1.9e-79 300.1 253 68.8
THA.LOC104815673 Tarenaya hassleriana HOM05D004453 ORTHO05D005375 1.9e-79 300.1 253 66.4
Dinv13490 Davidia involucrata HOM05D004453 ORTHO05D005375 3.2e-79 299.3 233 70.0
Prupe.6G001400 Prunus persica HOM05D004453 ORTHO05D005375 5.4e-79 298.5 237 70.0
CsaV3_4G017680 Cucumis sativus L. HOM05D004453 ORTHO05D005375 7.1e-79 298.1 233 70.0
Manes.17G052200 Manihot esculenta HOM05D004453 ORTHO05D005375 9.2e-79 297.7 236 69.1
Sed0012812 Sechium edule HOM05D004453 ORTHO05D005375 9.2e-79 297.7 236 69.1
TAR623G1190 Trochodendron aralioides HOM05D004453 ORTHO05D005375 1.2e-78 297.4 273 63.0
Actinidia16228 Actinidia chinensis HOM05D004453 ORTHO05D005375 3.5e-78 295.8 228 69.3
Manes.16G034900 Manihot esculenta HOM05D004453 ORTHO05D005375 7.8e-78 294.7 236 69.5
TWI34G0101 Tripterygium wilfordii HOM05D004453 ORTHO05D005375 7.8e-78 294.7 236 68.6
CARHR045220 Cardamine hirsuta HOM05D004453 ORTHO05D005375 1.7e-77 293.5 236 69.5
Atru.chr4.902 Acer truncatum HOM05D004453 ORTHO05D005375 6.6e-77 291.6 242 67.8
TWI60G0130 Tripterygium wilfordii HOM05D004453 ORTHO05D005375 6.6e-77 291.6 236 68.2
ClCG02G024480 Citrullus lanatus HOM05D004453 ORTHO05D005375 1.1e-76 290.8 199 77.9
Rhsim01G0183700 Rhododendron simsii HOM05D004453 ORTHO05D005375 1.9e-76 290.0 233 68.2
Eucgr.B03584 Eucalyptus grandis HOM05D004453 ORTHO05D005375 2.5e-76 289.7 219 73.1
Thhalv10011735m.g Eutrema salsugineum HOM05D004453 ORTHO05D005375 3.3e-76 289.3 239 67.4
PGR102G2973 Punica granatum HOM05D004453 ORTHO05D005375 4.3e-76 288.9 238 68.9
AL1G63560 Arabidopsis lyrata HOM05D004453 ORTHO05D005375 7.3e-76 288.1 254 65.0
Cc01_g00270 Coffea canephora HOM05D004453 ORTHO05D005375 9.5e-76 287.7 201 76.6
Ah.04g153920 Amaranthus hybridus HOM05D004453 ORTHO05D005375 1.2e-75 287.3 231 67.5
Ca_18793_v3 Cicer arietinum L. HOM05D004453 ORTHO05D005375 1.2e-75 287.3 243 67.5
Carub.0001s4404 Capsella rubella HOM05D004453 ORTHO05D005375 1.6e-75 287.0 239 67.8
Medtr4g083300 Medicago truncatula HOM05D004453 ORTHO05D005375 1.6e-75 287.0 244 68.9
MD11G1001200 Malus domestica HOM05D004453 ORTHO05D005375 2.1e-75 286.6 237 69.2
MELO3C031044.2 Cucumis melo HOM05D004453 ORTHO05D005375 2.8e-75 286.2 205 75.1
Lj4g0023466 Lotus japonicus HOM05D004453 ORTHO05D005375 3.6e-75 285.8 233 69.1
Sp1g41150 Schrenkiella parvula HOM05D004453 ORTHO05D005375 3.6e-75 285.8 239 66.9
Aqoxy1G00087 Aquilegia oxysepala HOM05D004453 ORTHO05D005375 4.7e-75 285.4 234 66.7
Lalb_Chr16g0385441 Lupinus albus HOM05D004453 ORTHO05D005375 4.7e-75 285.4 235 68.9
Glyma.07G225000 Glycine max HOM05D004453 ORTHO05D005375 6.2e-75 285.0 240 67.5
FAN16G2113 Fragaria x ananassa HOM05D004453 ORTHO05D005375 1.1e-74 284.3 247 65.6
TPR.G34071 Trifolium pratense HOM05D004453 ORTHO05D005375 1.1e-74 284.3 256 66.0
BcaC08g44204 Brassica carinata HOM05D004453 ORTHO05D005375 1.4e-74 283.9 239 67.4
BolC6t36812H Brassica oleracea HOM05D004453 ORTHO05D005375 1.4e-74 283.9 239 67.4
FAN25G0403 Fragaria x ananassa HOM05D004453 ORTHO05D005375 2.3e-74 283.1 238 68.1
AT1G55535 Arabidopsis thaliana HOM05D004453 ORTHO05D005375 3.1e-74 282.7 239 66.9
FvH4_3g45940 Fragaria vesca HOM05D004453 ORTHO05D005375 3.1e-74 282.7 247 65.6
FAN21G0323 Fragaria x ananassa HOM05D004453 ORTHO05D005375 3.1e-74 282.7 247 65.6
MD03G1001500 Malus domestica HOM05D004453 ORTHO05D005375 4.0e-74 282.3 211 74.9
CSS0040072 Camellia sinensis var. sinensis HOM05D004453 ORTHO05D005375 5.2e-74 282.0 227 68.3
FAN11G3564 Fragaria x ananassa HOM05D004453 ORTHO05D005375 6.8e-74 281.6 246 67.1
RcHm_v2.0_Chr5g0084051 Rosa chinensis HOM05D004453 ORTHO05D005375 8.9e-74 281.2 240 67.5
Glyma.20G024900 Glycine max HOM05D004453 ORTHO05D005375 1.5e-73 280.4 240 66.2
AUR62040892 Chenopodium quinoa HOM05D001653 ORTHO05D001751 3.4e-73 279.3 230 67.4
arahy.Tifrunner.gnm1.ann1.GHD6QC Arachis hypogaea HOM05D004453 ORTHO05D005375 5.8e-73 278.5 242 66.1
Nn2g15897 Nelumbo nucifera HOM05D004453 ORTHO05D005375 5.8e-73 278.5 229 67.7
vmacro12597 Vaccinium macrocarpon HOM05D004453 ORTHO05D005375 5.8e-73 278.5 201 74.6
Phvul.002G101400 Phaseolus vulgaris HOM05D004453 ORTHO05D005375 7.6e-73 278.1 240 65.0
AUR62042621 Chenopodium quinoa HOM05D004453 ORTHO05D005375 9.9e-73 277.7 230 67.0
Psat7g133480 Pisum sativum HOM05D004453 ORTHO05D005375 9.9e-73 277.7 231 68.0
arahy.Tifrunner.gnm1.ann1.C35Y2E Arachis hypogaea HOM05D004453 ORTHO05D005375 3.7e-72 275.8 242 65.7
A05p17380 Brassica napus HOM05D004453 ORTHO05D005375 3.7e-72 275.8 240 65.0
Solyc01g050070.4 Solanum lycopersicum HOM05D004453 ORTHO05D005375 3.7e-72 275.8 213 70.0
COL.COLO4_35070 Corchorus olitorius HOM05D004453 ORTHO05D005375 4.9e-72 275.4 247 65.6
DCAR_023824 Daucus carota HOM05D004453 ORTHO05D005375 4.9e-72 275.4 213 70.9
Oeu023964.1 Olea europaea HOM05D004453 ORTHO05D005375 4.9e-72 275.4 237 63.7
Sopen01g019490 Solanum pennellii HOM05D004453 ORTHO05D005375 8.4e-72 274.6 213 69.5
Thecc.09G205600 Theobroma cacao HOM05D004453 ORTHO05D005375 8.4e-72 274.6 251 65.7
BcaB02g10815 Brassica carinata HOM05D004453 ORTHO05D005375 3.2e-71 272.7 243 65.0
BcaC01g01533 Brassica carinata HOM05D004453 ORTHO05D005375 3.2e-71 272.7 257 61.1
Peaxi162Scf00186g01212 Petunia axillaris HOM05D004453 ORTHO05D005375 3.2e-71 272.7 235 65.5
TAR369G0719 Trochodendron aralioides HOM05D004453 ORTHO05D005375 7.1e-71 271.6 231 66.2
MBI19_g09317_MAGBIO Magnolia biondii HOM05D004453 ORTHO05D005375 1.6e-70 270.4 235 65.5
Sc13g0003960 Simmondsia chinensis HOM05D004453 ORTHO05D005375 1.6e-70 270.4 206 70.4
PSO339G2035 Papaver somniferum HOM05D004453 ORTHO05D005375 2.1e-70 270.0 239 61.9
C03p92850 Brassica napus HOM05D004453 ORTHO05D005375 2.7e-70 269.6 244 63.5
BolC3t21591H Brassica oleracea HOM05D004453 ORTHO05D005375 2.7e-70 269.6 244 63.5
Nn7g35809 Nelumbo nucifera HOM05D004453 ORTHO05D005375 4.6e-70 268.9 236 65.3
A08p00560 Brassica napus HOM05D004453 ORTHO05D005375 6.0e-70 268.5 242 65.7
C06p16140 Brassica napus HOM05D004453 ORTHO05D005375 6.0e-70 268.5 239 65.3
BraA08t32115Z Brassica rapa HOM05D004453 ORTHO05D005375 7.8e-70 268.1 242 65.7
PSO384G0395 Papaver somniferum HOM05D004453 ORTHO05D005375 1.7e-69 266.9 235 62.6
VMungo0251G3504 Vigna mungo HOM05D004453 ORTHO05D005375 1.7e-69 266.9 198 71.2
Potri.001G001400 Populus trichocarpa HOM05D004453 ORTHO05D005375 3.9e-69 265.8 189 75.7
Sabra01G0001000 Salix brachista HOM05D004453 ORTHO05D005375 3.9e-69 265.8 251 59.8
EL10Ac7g17533 Beta vulgaris HOM05D004453 ORTHO05D005375 1.1e-68 264.2 232 65.1
Duzib150G1073 Durio zibethinus HOM05D004453 ORTHO05D005375 4.3e-68 262.3 249 63.5
CiPaw.13G179200 Carya illinoinensis HOM05D004453 ORTHO05D005375 7.3e-68 261.5 236 64.4
ECA238G2653 Erigeron canadensis HOM05D004453 ORTHO05D005375 1.2e-67 260.8 237 63.7
Haze_22921 Corylus avellana HOM05D004453 ORTHO05D005375 1.6e-67 260.4 200 72.0
Hund01806 Selenicereus undatus HOM05D000185 ORTHO05D000105 2.1e-67 260.0 254 61.8
QL01p007909 Quercus lobata HOM05D004453 ORTHO05D005375 3.6e-67 259.2 271 59.4
Lalb_Chr05g0219881 Lupinus albus HOM05D004453 ORTHO05D005375 3.1e-66 256.1 204 70.6
Gohir.D03G147000 Gossypium hirsutum HOM05D004453 ORTHO05D005375 4.0e-66 255.8 201 71.1
HanXRQChr14g0437111 Helianthus annuus HOM05D004453 ORTHO05D005375 6.8e-66 255.0 233 62.2
Gohir.A03G021700 Gossypium hirsutum HOM05D004453 ORTHO05D005375 1.5e-65 253.8 201 71.1
Gorai.003G154400 Gossypium raimondii HOM05D004453 ORTHO05D005375 4.4e-65 252.3 201 70.1
ATR0068G064 Amborella trichopoda HOM05D004453 ORTHO05D005375 6.4e-64 248.4 236 60.2
Gohir.A08G014200 Gossypium hirsutum HOM05D004453 ORTHO05D005375 6.4e-64 248.4 242 61.6
Migut.N00531 Erythranthe guttata HOM05D004453 ORTHO05D005375 1.4e-63 247.3 226 60.6
Os07g0223700 Oryza sativa ssp. japonica HOM05D004453 ORTHO05D005375 1.9e-63 246.9 287 52.3
Aa31LG10G710 Aethionema arabicum HOM05D004453 ORTHO05D005375 4.2e-63 245.7 240 60.8
MSTRG.18889 Avicennia marina HOM05D004453 ORTHO05D005375 4.2e-63 245.7 239 60.7
CDE02G3000 Ceratophyllum demersum HOM05D004453 ORTHO05D005375 5.4e-63 245.4 237 56.5
CDE04G0921 Ceratophyllum demersum HOM05D004453 ORTHO05D005375 5.4e-63 245.4 235 57.4
Gohir.D08G020800 Gossypium hirsutum HOM05D004453 ORTHO05D005375 7.1e-63 245.0 242 60.7
Gorai.004G020100 Gossypium raimondii HOM05D004453 ORTHO05D005375 7.1e-63 245.0 242 60.7
Zm00001eb303530 Zea mays HOM05D004453 ORTHO05D005375 1.3e-61 240.7 242 57.9
PSO675G3694 Papaver somniferum HOM05D004453 ORTHO05D005375 1.9e-60 236.9 217 61.8
ECA248G0105 Erigeron canadensis HOM05D004453 ORTHO05D005375 9.6e-60 234.6 190 68.9
PSO541G5087 Papaver somniferum HOM05D004453 ORTHO05D005375 9.6e-60 234.6 217 60.8
Lsat_1_v5_gn_1_71301 Lactuca sativa HOM05D004453 ORTHO05D005375 2.1e-59 233.4 244 58.6
SGA_v2.0_scaffold6G03329 Striga asiatica HOM05D004453 ORTHO05D005375 1.1e-58 231.1 183 68.3
AL3G25290 Arabidopsis lyrata HOM05D004453 ORTHO05D005375 4.4e-57 225.7 259 56.0
SEGI_24089 Sequoiadendron giganteum HOM05D004453 ORTHO05D005375 7.6e-57 224.9 232 56.5
Sp3g11610 Schrenkiella parvula HOM05D004453 ORTHO05D005375 9.9e-57 224.6 258 54.3
Nitab4.5_0002355g0020 Nicotiana tabacum HOM05D004453 ORTHO05D005375 6.4e-56 221.9 246 55.3
HPP92_000788 Vanilla planifolia HOM05D004453 ORTHO05D005375 8.4e-56 221.5 227 55.9
Lsat_1_v5_gn_2_50660 Lactuca sativa HOM05D004453 ORTHO05D005375 1.4e-55 220.7 237 56.5
HPP92_026813 Vanilla planifolia HOM05D004453 ORTHO05D005375 1.9e-55 220.3 226 55.8
CARHR088030 Cardamine hirsuta HOM05D004453 ORTHO05D005375 7.1e-55 218.4 255 55.3
Carub.0003s1279 Capsella rubella HOM05D004453 ORTHO05D005375 1.6e-54 217.2 263 53.6
Potri.003G223300 Populus trichocarpa HOM05D004453 ORTHO05D005375 1.6e-54 217.2 225 55.6
SGA_v2.0_scaffold3G01700 Striga asiatica HOM05D004453 ORTHO05D005375 1.6e-54 217.2 216 57.9
AT3G13420 Arabidopsis thaliana HOM05D004453 ORTHO05D005375 3.5e-54 216.1 160 72.5
Thhalv10021458m.g Eutrema salsugineum HOM05D004453 ORTHO05D005375 4.6e-54 215.7 215 58.6
Aa31LG8G630 Aethionema arabicum HOM05D004453 ORTHO05D005375 1.3e-53 214.2 196 62.2
C05p54480 Brassica napus HOM05D004453 ORTHO05D005375 1.3e-53 214.2 271 51.7
BolC5t34115H Brassica oleracea HOM05D004453 ORTHO05D005375 1.3e-53 214.2 271 51.7
A05p36110 Brassica napus HOM05D004453 ORTHO05D005375 6.6e-53 211.8 170 68.8
Nitab4.5_0000075g0210 Nicotiana tabacum HOM05D004453 ORTHO05D005375 6.9e-50 201.8 235 50.2
SHI06880 Sapria himalayana HOM05D004453 ORTHO05D005375 5.8e-49 198.7 174 64.9
BcaC05g29180 Brassica carinata HOM05D004453 ORTHO05D005375 6.4e-48 195.3 146 74.7
SMO271G0148 Selaginella moellendorffii HOM05D004453 ORTHO05D005375 6.4e-48 195.3 208 57.2
SHI31305 Sapria himalayana HOM05D004453 ORTHO05D005375 1.9e-47 193.7 192 60.9
SMO203G0107 Selaginella moellendorffii HOM05D004453 ORTHO05D005375 1.9e-44 183.7 197 55.8
AagrBONN_evm.TU.Sc2ySwM_228.4359 Anthoceros agrestis HOM05D004453 ORTHO05D005375 9.6e-44 181.4 196 54.6
BraA05t20635Z Brassica rapa HOM05D004453 ORTHO05D005375 3.7e-43 179.5 126 77.0
unitig_62.g23532 Utricularia gibba HOM05D004453 ORTHO05D005375 3.1e-42 176.4 229 48.5
unitig_52.g17526 Utricularia gibba HOM05D004453 ORTHO05D005375 3.8e-40 169.5 233 46.8
Mapoly0036s0042 Marchantia polymorpha HOM05D004453 ORTHO05D005375 8.4e-40 168.3 205 48.8
SalBow3G0087 Salvia bowleyana HOM05D004453 ORTHO05D005375 7.9e-38 161.8 175 52.0
Pp3c14_21170 Physcomitrium patens HOM05D004453 ORTHO05D005375 3.3e-36 156.4 179 52.5
CARHR152870 Cardamine hirsuta HOM05D004453 ORTHO05D005375 4.3e-36 156.0 115 73.9
Pp3c1_38420 Physcomitrium patens HOM05D004453 ORTHO05D005375 5.7e-36 155.6 179 53.6
Lj1C553T2 Lonicera japonica HOM05D004453 ORTHO05D005375 1.7e-32 144.1 103 72.8
Pp3c2_4610 Physcomitrium patens HOM05D004453 ORTHO05D005375 1.7e-32 144.1 182 50.5
Lj1C553T1 Lonicera japonica HOM05D004453 ORTHO05D005375 1.2e-30 137.9 100 74.0
Actinidia30440 Actinidia chinensis HOM05D004453 ORTHO05D005375 9.0e-26 121.7 97 73.2
SMO353G0048 Selaginella moellendorffii HOM05D004453 ORTHO05D005375 9.0e-26 121.7 198 41.4
Oeu060910.1 Olea europaea HOM05D004453 ORTHO05D005375 1.5e-25 120.9 104 59.6
HPP92_019023 Vanilla planifolia HOM05D004453 ORTHO05D005375 4.6e-22 109.4 90 61.1
Zm00001eb095200 Zea mays HOM05D004453 ORTHO05D005375 1.0e-21 108.2 108 54.6
BcaB01g02219 Brassica carinata HOM05D004453 ORTHO05D005375 7.2e-15 85.5 102 47.1
SMO308G0081 Selaginella moellendorffii HOM05D004453 ORTHO05D005375 9.4e-15 85.1 143 46.2
Psat5g028160 Pisum sativum HOM05D004453 ORTHO05D005375 1.6e-14 84.3 95 50.5
Psat5g028080 Pisum sativum HOM05D004453 ORTHO05D005375 2.7e-14 83.6 104 48.1
HPP92_019024 Vanilla planifolia HOM05D004453 ORTHO05D005375 2.6e-12 77.0 126 38.1
CBR_g35002 Chara braunii HOM05D000321 ORTHO05D000204 3.8e-08 63.2 65 60.0
BcaC04g20719 Brassica carinata HOM05D004453 ORTHO05D014925 2.5e-07 60.5 91 42.9


User provided reference genes

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