Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR119G0727 Punica granatum HOM05D004548 ORTHO05D005402 2.7e-129 465.3 228 100.0
PGR119G2305 Punica granatum HOM05D004548 ORTHO05D005402 1.3e-102 376.7 225 80.9
Eucgr.J01653 Eucalyptus grandis HOM05D004548 ORTHO05D005402 2.9e-83 312.4 223 68.6
Prupe.1G211800 Prunus persica HOM05D004548 ORTHO05D005402 1.4e-82 310.1 224 65.6
QL03p048368 Quercus lobata HOM05D004548 ORTHO05D005402 4.2e-82 308.5 225 65.8
TAR374G1650 Trochodendron aralioides HOM05D004548 ORTHO05D005402 4.2e-82 308.5 218 68.3
Gohir.A09G002500 Gossypium hirsutum HOM05D004548 ORTHO05D005402 7.1e-82 307.8 218 68.8
Cfa019955 Carpinus fangiana HOM05D004548 ORTHO05D005402 9.3e-82 307.4 218 68.3
Gohir.D09G002300 Gossypium hirsutum HOM05D004548 ORTHO05D005402 1.2e-81 307.0 218 68.8
Gorai.006G002800 Gossypium raimondii HOM05D004548 ORTHO05D005402 1.2e-81 307.0 218 68.8
COL.COLO4_06519 Corchorus olitorius HOM05D004548 ORTHO05D005402 2.1e-81 306.2 218 66.5
MD13G1133800 Malus domestica HOM05D004548 ORTHO05D005402 2.7e-81 305.8 220 67.7
MSTRG.17963 Avicennia marina HOM05D004548 ORTHO05D005402 3.5e-81 305.4 215 67.0
CiPaw.06G111100 Carya illinoinensis HOM05D004548 ORTHO05D005402 7.9e-81 304.3 215 67.4
Duzib187G0077 Durio zibethinus HOM05D004548 ORTHO05D005402 1.0e-80 303.9 218 69.3
Potri.003G160500 Populus trichocarpa HOM05D004548 ORTHO05D005402 3.0e-80 302.4 216 64.8
GSVIVG01025270001 Vitis vinifera HOM05D004548 ORTHO05D005402 3.0e-80 302.4 222 64.0
Atru.chr12.1469 Acer truncatum HOM05D004548 ORTHO05D005402 3.9e-80 302.0 218 68.3
Hma1.2p1_0738F.1_g210920 Hydrangea macrophylla HOM05D004548 ORTHO05D005402 3.9e-80 302.0 218 65.6
CSS0047568 Camellia sinensis var. sinensis HOM05D004548 ORTHO05D005402 8.7e-80 300.8 221 64.7
ClCG07G012080 Citrullus lanatus HOM05D004548 ORTHO05D005402 1.1e-79 300.4 222 64.4
Thecc.01G240000 Theobroma cacao HOM05D004548 ORTHO05D005402 1.1e-79 300.4 218 67.9
Manes.12G130500 Manihot esculenta HOM05D004548 ORTHO05D005402 5.7e-79 298.1 219 65.8
Rhsim12G0068000 Rhododendron simsii HOM05D004548 ORTHO05D005402 1.3e-78 297.0 221 64.3
Sed0003942 Sechium edule HOM05D004548 ORTHO05D005402 1.6e-78 296.6 216 65.7
Glyma.09G186700 Glycine max HOM05D004548 ORTHO05D005402 1.1e-77 293.9 218 63.3
VMungo0464G1792 Vigna mungo HOM05D004548 ORTHO05D005402 1.1e-77 293.9 223 63.7
Lj2g0001774 Lotus japonicus HOM05D004548 ORTHO05D005402 1.4e-77 293.5 226 62.4
THA.LOC104807222 Tarenaya hassleriana HOM05D004548 ORTHO05D005402 1.8e-77 293.1 218 64.7
CANSAT80G0994 Cannabis sativa HOM05D004548 ORTHO05D005402 2.4e-77 292.7 224 62.9
CsaV3_4G002070 Cucumis sativus L. HOM05D004548 ORTHO05D005402 2.4e-77 292.7 219 62.1
FAN07G0049 Fragaria x ananassa HOM05D004548 ORTHO05D005402 2.4e-77 292.7 218 64.7
Nitab4.5_0001348g0030 Nicotiana tabacum HOM05D004548 ORTHO05D005402 3.1e-77 292.4 212 64.2
TWI18G0021 Tripterygium wilfordii HOM05D004548 ORTHO05D005402 3.1e-77 292.4 218 65.6
RcHm_v2.0_Chr4g0428441 Rosa chinensis HOM05D004548 ORTHO05D005402 4.1e-77 292.0 218 65.1
TPR.G38962 Trifolium pratense HOM05D004548 ORTHO05D005402 4.1e-77 292.0 220 64.1
Migut.N00675 Erythranthe guttata HOM05D004548 ORTHO05D005402 5.3e-77 291.6 218 65.6
Oeu058206.1 Olea europaea HOM05D004548 ORTHO05D005402 5.3e-77 291.6 218 64.2
Oeu058204.1 Olea europaea HOM05D004548 ORTHO05D005402 6.9e-77 291.2 218 64.2
Ciclev10029256m.g Citrus clementina HOM05D004548 ORTHO05D005402 9.0e-77 290.8 218 65.1
FvH4_4g22210 Fragaria vesca HOM05D004548 ORTHO05D005402 9.0e-77 290.8 213 63.8
Lj1A1122T48 Lonicera japonica HOM05D004548 ORTHO05D005402 1.5e-76 290.0 217 62.2
CAN.G874.37 Capsicum annuum HOM05D004548 ORTHO05D005402 2.0e-76 289.7 212 61.8
Sopen06g034370 Solanum pennellii HOM05D004548 ORTHO05D005402 2.0e-76 289.7 218 60.1
PGSC0003DMG400027684 Solanum tuberosum HOM05D004548 ORTHO05D005402 2.6e-76 289.3 218 60.6
Aqoxy1G02233 Aquilegia oxysepala HOM05D004548 ORTHO05D005402 3.4e-76 288.9 212 63.2
SGA_v2.0_scaffold77G25307 Striga asiatica HOM05D004548 ORTHO05D005402 3.4e-76 288.9 223 62.8
Solyc06g082980.3 Solanum lycopersicum HOM05D004548 ORTHO05D005402 4.5e-76 288.5 218 60.1
Peaxi162Scf01242g00029 Petunia axillaris HOM05D004548 ORTHO05D005402 5.9e-76 288.1 218 61.5
FAN12G2246 Fragaria x ananassa HOM05D004548 ORTHO05D005402 7.7e-76 287.7 213 62.9
MELO3C017829.2 Cucumis melo HOM05D004548 ORTHO05D005402 1.0e-75 287.3 220 60.9
Nitab4.5_0007144g0020 Nicotiana tabacum HOM05D004548 ORTHO05D005402 1.0e-75 287.3 220 60.9
Nn4g22076 Nelumbo nucifera HOM05D004548 ORTHO05D005402 1.3e-75 287.0 213 63.4
Peaxi162Scf00235g00217 Petunia axillaris HOM05D004548 ORTHO05D005402 1.3e-75 287.0 218 62.8
SalBow3G2027 Salvia bowleyana HOM05D004548 ORTHO05D005402 1.3e-75 287.0 215 62.8
Phvul.004G160000 Phaseolus vulgaris HOM05D004548 ORTHO05D005402 5.0e-75 285.0 225 61.8
Lsat_1_v5_gn_5_6480 Lactuca sativa HOM05D004548 ORTHO05D005402 1.1e-74 283.9 223 61.4
Lsat_1_v5_gn_8_83161 Lactuca sativa HOM05D004548 ORTHO05D005402 1.1e-74 283.9 223 61.4
Carub.0001s1957 Capsella rubella HOM05D004548 ORTHO05D005402 3.2e-74 282.3 218 62.4
Sc17g0004750 Simmondsia chinensis HOM05D004548 ORTHO05D005402 1.6e-73 280.0 213 62.4
Medtr6g084920 Medicago truncatula HOM05D004548 ORTHO05D005402 2.1e-73 279.6 220 61.4
Glyma.09G186900 Glycine max HOM05D004548 ORTHO05D005402 4.6e-73 278.5 227 57.3
HanXRQChr04g0124971 Helianthus annuus HOM05D004548 ORTHO05D005402 4.6e-73 278.5 223 59.2
MBI07_g42009_MAGBIO Magnolia biondii HOM05D004548 ORTHO05D005402 7.9e-73 277.7 212 60.8
Cc01_g15960 Coffea canephora HOM05D004548 ORTHO05D005402 1.0e-72 277.3 215 60.0
AL1G32850 Arabidopsis lyrata HOM05D004548 ORTHO05D005402 2.3e-72 276.2 218 59.2
BraA07t29333Z Brassica rapa HOM05D004548 ORTHO05D005402 2.3e-72 276.2 226 59.7
Aa31LG7G10030 Aethionema arabicum HOM05D004548 ORTHO05D005402 3.0e-72 275.8 217 59.9
BcaB03g14416 Brassica carinata HOM05D004548 ORTHO05D005402 3.0e-72 275.8 228 59.2
CARHR020520 Cardamine hirsuta HOM05D004548 ORTHO05D005402 3.9e-72 275.4 219 61.2
A07p16050 Brassica napus HOM05D004548 ORTHO05D005402 5.1e-72 275.0 226 59.3
HPP92_007022 Vanilla planifolia HOM05D004548 ORTHO05D005402 5.1e-72 275.0 219 59.4
Sp1g17810 Schrenkiella parvula HOM05D004548 ORTHO05D005402 6.7e-72 274.6 218 60.1
BcaB03g14346 Brassica carinata HOM05D004548 ORTHO05D005402 1.1e-71 273.9 226 59.3
PSO675G5153 Papaver somniferum HOM05D004548 ORTHO05D005402 1.1e-71 273.9 219 62.1
ECA236G1448 Erigeron canadensis HOM05D004548 ORTHO05D005402 2.0e-71 273.1 218 61.0
Glyma.09G186800 Glycine max HOM05D004548 ORTHO05D005402 2.0e-71 273.1 212 61.8
TPR.G38981 Trifolium pratense HOM05D004548 ORTHO05D005402 2.0e-71 273.1 220 61.4
C07p23420 Brassica napus HOM05D004548 ORTHO05D005402 2.5e-71 272.7 226 59.3
BolC7t42875H Brassica oleracea HOM05D004548 ORTHO05D005402 2.5e-71 272.7 226 59.3
PSO541G3463 Papaver somniferum HOM05D004548 ORTHO05D005402 2.5e-71 272.7 219 61.6
Thhalv10008732m.g Eutrema salsugineum HOM05D004548 ORTHO05D005402 3.3e-71 272.3 218 60.1
AT1G20050 Arabidopsis thaliana HOM05D004548 ORTHO05D005402 1.3e-70 270.4 210 59.5
HPP92_007039 Vanilla planifolia HOM05D004548 ORTHO05D005402 1.3e-70 270.4 208 60.6
Lalb_Chr14g0371281 Lupinus albus HOM05D004548 ORTHO05D005402 4.8e-70 268.5 218 61.5
unitig_0.g417 Utricularia gibba HOM05D004548 ORTHO05D005402 1.1e-69 267.3 203 64.0
Hund23298 Selenicereus undatus HOM05D004548 ORTHO05D005402 5.3e-69 265.0 218 55.0
Actinidia33989 Actinidia chinensis HOM05D004548 ORTHO05D005402 6.9e-69 264.6 210 59.5
CDE04G3258 Ceratophyllum demersum HOM05D004548 ORTHO05D005402 1.2e-68 263.8 205 59.0
BraA06t24724Z Brassica rapa HOM05D004548 ORTHO05D005402 2.0e-68 263.1 221 55.7
BolC5t30565H Brassica oleracea HOM05D004548 ORTHO05D005402 4.5e-68 261.9 218 56.9
FAN17G2493 Fragaria x ananassa HOM05D004548 ORTHO05D005402 5.9e-68 261.5 275 50.5
ATR0665G198 Amborella trichopoda HOM05D004548 ORTHO05D005402 1.1e-66 257.3 213 58.2
Hund18283 Selenicereus undatus HOM05D004548 ORTHO05D005402 4.2e-66 255.4 212 55.2
BcaB07g32020 Brassica carinata HOM05D004548 ORTHO05D005402 5.5e-66 255.0 217 58.5
AUR62013297 Chenopodium quinoa HOM05D004548 ORTHO05D005402 3.0e-64 249.2 201 55.7
EL10Ac8g18737 Beta vulgaris HOM05D004548 ORTHO05D005402 3.9e-64 248.8 213 53.1
Os01g0103600 Oryza sativa ssp. japonica HOM05D004548 ORTHO05D005402 2.6e-63 246.1 216 55.1
TPR.G21858 Trifolium pratense HOM05D004548 ORTHO05D005402 3.3e-63 245.7 175 67.4
Zm00001eb334120 Zea mays HOM05D004548 ORTHO05D005402 7.4e-63 244.6 211 55.0
CSS0003180 Camellia sinensis var. sinensis HOM05D004548 ORTHO05D005402 9.7e-63 244.2 210 54.3
CSS0047688 Camellia sinensis var. sinensis HOM05D004548 ORTHO05D005402 9.7e-63 244.2 210 54.3
Ca_25508_v3 Cicer arietinum L. HOM05D004548 ORTHO05D005402 2.4e-61 239.6 175 65.1
arahy.Tifrunner.gnm1.ann1.Y6E3CC Arachis hypogaea HOM05D004548 ORTHO05D005402 4.1e-61 238.8 218 56.4
BcaB03g14342 Brassica carinata HOM05D004548 ORTHO05D005402 5.3e-61 238.4 228 53.9
A06p16180 Brassica napus HOM05D004548 ORTHO05D005402 5.3e-61 238.4 201 56.2
BcaC05g25903 Brassica carinata HOM05D004548 ORTHO05D005402 3.5e-60 235.7 199 57.3
arahy.Tifrunner.gnm1.ann1.L8Q3U6 Arachis hypogaea HOM05D004548 ORTHO05D005402 4.5e-60 235.3 179 64.2
SEGI_00448 Sequoiadendron giganteum HOM05D004548 ORTHO05D005402 5.9e-60 235.0 200 53.0
Glyma.13G078900 Glycine max HOM05D004548 ORTHO05D005402 7.7e-60 234.6 177 62.7
vmacro15975 Vaccinium macrocarpon HOM05D004548 ORTHO05D005402 1.0e-59 234.2 209 56.5
BcaB03g14411 Brassica carinata HOM05D004548 ORTHO05D005402 6.5e-59 231.5 228 53.1
SGA_v2.0_scaffold95G28703 Striga asiatica HOM05D004548 ORTHO05D005402 8.5e-59 231.1 193 59.1
Haze_12526 Corylus avellana HOM05D004548 ORTHO05D005402 3.2e-58 229.2 215 55.3
Nn3g16208 Nelumbo nucifera HOM05D004548 ORTHO05D005402 5.5e-58 228.4 164 65.9
Ciclev10002435m.g Citrus clementina HOM05D004548 ORTHO05D005402 1.0e-56 224.2 204 54.9
Ciclev10029254m.g Citrus clementina HOM05D004548 ORTHO05D005402 6.7e-56 221.5 204 53.9
DCAR_019172 Daucus carota HOM05D004548 ORTHO05D005402 5.7e-55 218.4 165 59.4
Psat1g039080 Pisum sativum HOM05D004548 ORTHO05D005402 3.7e-54 215.7 159 64.8
AUR62011188 Chenopodium quinoa HOM05D004548 ORTHO05D005402 4.8e-54 215.3 168 57.7
Mapoly0026s0030 Marchantia polymorpha HOM05D004548 ORTHO05D005402 2.4e-53 213.0 217 50.2
Zm00001eb126960 Zea mays HOM05D004548 ORTHO05D005402 4.1e-53 212.2 217 49.3
BcaC05g25905 Brassica carinata HOM05D004548 ORTHO05D005402 2.6e-52 209.5 207 52.7
Cfa009469 Carpinus fangiana HOM05D004548 ORTHO05D005402 2.6e-52 209.5 152 67.8
MD16G1144400 Malus domestica HOM05D004548 ORTHO05D005402 7.7e-52 208.0 150 65.3
Pp3c9_19720 Physcomitrium patens HOM05D004548 ORTHO05D005402 1.9e-50 203.4 204 49.0
SMO196G0274 Selaginella moellendorffii HOM05D004548 ORTHO05D005402 3.2e-50 202.6 202 49.0
Sabra03G0116700 Salix brachista HOM05D004548 ORTHO05D005402 5.5e-50 201.8 216 49.1
SMO119G0501 Selaginella moellendorffii HOM05D004548 ORTHO05D005402 1.2e-49 200.7 214 45.8
AagrBONN_evm.TU.Sc2ySwM_228.5752 Anthoceros agrestis HOM05D004548 ORTHO05D005402 2.3e-48 196.4 209 44.5
EL10Ac8g18743 Beta vulgaris HOM05D004548 ORTHO05D005402 1.5e-47 193.7 217 41.9
vmacro04885 Vaccinium macrocarpon HOM05D004548 ORTHO05D005402 4.4e-47 192.2 220 48.6
C05p18540 Brassica napus HOM05D004548 ORTHO05D005402 1.6e-44 183.7 218 44.0
BcaC05g25899 Brassica carinata HOM05D004548 ORTHO05D005402 1.5e-39 167.2 218 41.7
Ciclev10006027m.g Citrus clementina HOM05D004548 ORTHO05D005402 2.8e-38 162.9 148 49.3
EL10Ac8g18745 Beta vulgaris HOM05D004548 ORTHO05D005402 3.1e-37 159.5 217 36.4
Ah.14g079290 Amaranthus hybridus HOM05D004548 ORTHO05D005402 4.5e-36 155.6 213 41.8
SEGI_03556 Sequoiadendron giganteum HOM05D004548 ORTHO05D005402 1.0e-35 154.5 109 64.2
Cre12.g557900 Chlamydomonas reinhardtii HOM05D004548 ORTHO05D005402 2.9e-35 152.9 206 37.4
Ah.09g224580 Amaranthus hybridus HOM05D004548 ORTHO05D005402 1.1e-34 151.0 215 39.5
Oeu051508.1 Olea europaea HOM05D004548 ORTHO05D005402 2.1e-33 146.7 95 66.3
Actinidia09588 Actinidia chinensis HOM05D004548 ORTHO05D005402 8.9e-32 141.4 128 53.1
Sabra01G0049300 Salix brachista HOM05D004548 ORTHO05D000739 2.0e-31 140.2 104 69.2
Potri.001G070301 Populus trichocarpa HOM05D004548 ORTHO05D005402 1.7e-30 137.1 97 64.9
Mapoly0072s0066 Marchantia polymorpha HOM05D004548 ORTHO05D005402 3.7e-30 136.0 202 36.6
CBR_g55168 Chara braunii HOM05D004548 ORTHO05D005402 2.4e-29 133.3 127 51.2
EL10Ac8g18747 Beta vulgaris HOM05D004548 ORTHO05D005402 1.6e-28 130.6 115 50.4
EL10Ac8g18746 Beta vulgaris HOM05D004548 ORTHO05D005402 2.1e-25 120.2 205 34.1
EL10Ac8g18744 Beta vulgaris HOM05D004548 ORTHO05D005402 1.8e-24 117.1 203 34.0
Psat5g295440 Pisum sativum HOM05D004548 ORTHO05D005402 8.9e-24 114.8 85 61.2
COL.COLO4_05696 Corchorus olitorius HOM05D004548 ORTHO05D005402 1.1e-21 107.8 82 61.0
Nitab4.5_0000038g0240 Nicotiana tabacum HOM05D004548 ORTHO05D005402 5.4e-21 105.5 90 56.7
FAN12G3080 Fragaria x ananassa HOM05D004548 ORTHO05D005402 1.2e-20 104.4 190 37.4
Oeu018311.3 Olea europaea HOM05D004548 ORTHO05D005402 5.8e-15 85.5 207 34.8
MELO3C030902.2 Cucumis melo HOM05D004548 ORTHO05D005402 4.6e-12 75.9 85 44.7
Ah.16g106680 Amaranthus hybridus HOM05D004548 ORTHO05D005402 1.5e-10 70.9 73 50.7
Cpa.g.sc38.60 Carica papaya HOM05D004548 ORTHO05D005402 3.4e-07 59.7 43 65.1


User provided reference genes

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