Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR119G0543 Punica granatum HOM05D006884 ORTHO05D008604 0.0e+00 1312.4 678 100.0
QL01p023227 Quercus lobata HOM05D006884 ORTHO05D008604 3.8e-272 941.4 685 71.4
CiPaw.13G108400 Carya illinoinensis HOM05D006884 ORTHO05D008604 8.4e-272 940.3 684 70.8
Cfa011353 Carpinus fangiana HOM05D006884 ORTHO05D008604 2.5e-271 938.7 684 71.9
GSVIVG01025156001 Vitis vinifera HOM05D006884 ORTHO05D008604 5.5e-271 937.6 686 70.4
Eucgr.J00944 Eucalyptus grandis HOM05D006884 ORTHO05D008604 2.1e-270 935.6 685 70.2
Prupe.6G097500 Prunus persica HOM05D006884 ORTHO05D008604 6.3e-267 924.1 673 71.5
Haze_23897 Corylus avellana HOM05D006884 ORTHO05D008604 2.9e-264 915.2 728 67.3
Atru.chr3.3680 Acer truncatum HOM05D006884 ORTHO05D008604 4.2e-263 911.4 676 68.6
COL.COLO4_05186 Corchorus olitorius HOM05D006884 ORTHO05D008604 1.0e-261 906.7 681 69.9
Duzib168G2304 Durio zibethinus HOM05D006884 ORTHO05D008604 1.7e-259 899.4 682 69.4
CSS0004159 Camellia sinensis var. sinensis HOM05D006884 ORTHO05D008604 3.4e-257 891.7 677 68.8
CANSAT54G0393 Cannabis sativa HOM05D006884 ORTHO05D008604 7.7e-257 890.6 685 68.3
Manes.04G024400 Manihot esculenta HOM05D006884 ORTHO05D008604 7.2e-255 884.0 681 67.7
Actinidia07119 Actinidia chinensis HOM05D006884 ORTHO05D008604 3.6e-254 881.7 682 67.4
Hma1.2p1_0071F.1_g038150 Hydrangea macrophylla HOM05D006884 ORTHO05D008604 1.0e-253 880.2 687 67.5
TAR369G0310 Trochodendron aralioides HOM05D006884 ORTHO05D008604 3.7e-251 871.7 689 66.9
ClCG03G002300 Citrullus lanatus HOM05D006884 ORTHO05D008604 3.5e-249 865.1 684 65.5
Gorai.013G255800 Gossypium raimondii HOM05D006884 ORTHO05D008604 5.9e-249 864.4 682 65.8
Gohir.D13G225000 Gossypium hirsutum HOM05D006884 ORTHO05D008604 3.8e-248 861.7 682 65.7
TWI38G0581 Tripterygium wilfordii HOM05D006884 ORTHO05D008604 3.2e-247 858.6 690 66.1
TWI38G2405 Tripterygium wilfordii HOM05D006884 ORTHO05D008604 4.2e-247 858.2 690 67.0
Gohir.A13G221000 Gossypium hirsutum HOM05D006884 ORTHO05D008604 5.5e-247 857.8 682 65.2
arahy.Tifrunner.gnm1.ann1.AY6ICH Arachis hypogaea HOM05D006884 ORTHO05D008604 3.0e-245 852.0 673 65.8
Lalb_Chr01g0004191 Lupinus albus HOM05D006884 ORTHO05D008604 6.7e-245 850.9 674 65.0
MELO3C005036.2 Cucumis melo HOM05D006884 ORTHO05D008604 2.6e-244 849.0 683 64.3
vmacro03180 Vaccinium macrocarpon HOM05D006884 ORTHO05D008604 2.6e-244 849.0 698 64.6
Ciclev10027944m.g Citrus clementina HOM05D006884 ORTHO05D008604 5.7e-244 847.8 666 66.5
RcHm_v2.0_Chr5g0060051 Rosa chinensis HOM05D006884 ORTHO05D008604 3.7e-243 845.1 680 65.3
Glyma.11G154214 Glycine max HOM05D006884 ORTHO05D008604 7.0e-242 840.9 682 64.7
DCAR_018827 Daucus carota HOM05D006884 ORTHO05D008604 5.0e-240 834.7 670 64.5
Lj2C1032T7 Lonicera japonica HOM05D006884 ORTHO05D008604 8.5e-240 833.9 710 62.4
Oeu005901.1 Olea europaea HOM05D006884 ORTHO05D008604 2.5e-239 832.4 704 62.2
Potri.009G014900 Populus trichocarpa HOM05D006884 ORTHO05D008604 7.2e-239 830.9 672 64.7
Psat7g223440 Pisum sativum HOM05D006884 ORTHO05D008604 9.4e-239 830.5 677 64.4
Medtr4g060500 Medicago truncatula HOM05D006884 ORTHO05D008604 3.6e-238 828.6 681 63.7
Peaxi162Scf00351g00322 Petunia axillaris HOM05D006884 ORTHO05D008604 3.6e-238 828.6 694 61.1
FvH4_3g32920 Fragaria vesca HOM05D006884 ORTHO05D008604 4.7e-238 828.2 680 64.4
Lj3g0026527 Lotus japonicus HOM05D006884 ORTHO05D008604 1.0e-237 827.0 672 64.4
Solyc11g069170.2 Solanum lycopersicum HOM05D006884 ORTHO05D008604 4.0e-237 825.1 678 62.4
TPR.G15554 Trifolium pratense HOM05D006884 ORTHO05D008604 5.2e-237 824.7 673 64.0
Phvul.011G073400 Phaseolus vulgaris HOM05D006884 ORTHO05D008604 6.8e-237 824.3 678 64.3
Sopen11g027910 Solanum pennellii HOM05D006884 ORTHO05D008604 6.8e-237 824.3 678 62.4
Cc01_g11430 Coffea canephora HOM05D006884 ORTHO05D008604 3.4e-236 822.0 682 63.8
VMungo1127G0767 Vigna mungo HOM05D006884 ORTHO05D008604 4.4e-236 821.6 675 63.4
Aqoxy4G03234 Aquilegia oxysepala HOM05D006884 ORTHO05D008604 7.5e-236 820.8 688 64.2
Cpa.g.sc139.78 Carica papaya HOM05D006884 ORTHO05D008604 1.3e-235 820.1 598 71.1
FAN11G3181 Fragaria x ananassa HOM05D006884 ORTHO05D008604 3.1e-234 815.5 680 63.8
PGSC0003DMG400008066 Solanum tuberosum HOM05D006884 ORTHO05D008604 4.5e-233 811.6 719 59.0
FAN25G2544 Fragaria x ananassa HOM05D006884 ORTHO05D008604 2.1e-230 802.7 677 63.2
PSO063G0254 Papaver somniferum HOM05D006884 ORTHO05D008604 8.0e-230 800.8 689 62.6
Sed0010984 Sechium edule HOM05D006884 ORTHO05D008604 4.4e-228 795.0 683 61.8
Nitab4.5_0000999g0100 Nicotiana tabacum HOM05D006884 ORTHO05D008604 2.2e-227 792.7 719 58.4
AT1G07970 Arabidopsis thaliana HOM05D006884 ORTHO05D008604 3.3e-223 778.9 684 60.7
Carub.0001s0732 Capsella rubella HOM05D006884 ORTHO05D008604 2.1e-222 776.2 682 60.6
THA.LOC104815748 Tarenaya hassleriana HOM05D006884 ORTHO05D008604 6.1e-222 774.6 680 60.7
Migut.N02612 Erythranthe guttata HOM05D006884 ORTHO05D008604 4.0e-221 771.9 686 59.0
CARHR007750 Cardamine hirsuta HOM05D006884 ORTHO05D008604 8.9e-221 770.8 684 59.8
Thhalv10006976m.g Eutrema salsugineum HOM05D006884 ORTHO05D008604 2.0e-220 769.6 681 60.1
A06p05030 Brassica napus HOM05D006884 ORTHO05D008604 4.4e-220 768.5 677 60.0
MSTRG.12324 Avicennia marina HOM05D006884 ORTHO05D008604 1.3e-219 766.9 686 59.8
C05p05970 Brassica napus HOM05D006884 ORTHO05D008604 4.9e-219 765.0 677 59.8
BraA06t23709Z Brassica rapa HOM05D006884 ORTHO05D008604 1.4e-218 763.5 676 59.5
HanXRQChr07g0197411 Helianthus annuus HOM05D006884 ORTHO05D008604 1.8e-218 763.1 678 58.8
Sc06g0010010 Simmondsia chinensis HOM05D006884 ORTHO05D008604 2.4e-218 762.7 681 61.4
BolC5t29358H Brassica oleracea HOM05D003203 ORTHO05D003526 4.1e-218 761.9 677 59.4
Nitab4.5_0002186g0020 Nicotiana tabacum HOM05D006884 ORTHO05D008604 4.1e-218 761.9 631 62.3
ECA238G4524 Erigeron canadensis HOM05D006884 ORTHO05D008604 5.0e-216 755.0 662 59.5
AL1G18300 Arabidopsis lyrata HOM05D006884 ORTHO05D008604 1.2e-214 750.4 682 59.1
Hund10472 Selenicereus undatus HOM05D006884 ORTHO05D008604 3.1e-213 745.7 678 60.5
arahy.Tifrunner.gnm1.ann1.H1W27A Arachis hypogaea HOM05D006884 ORTHO05D008604 1.5e-212 743.4 603 65.0
Ca_19247_v3 Cicer arietinum L. HOM05D006884 ORTHO05D008604 7.5e-212 741.1 681 59.8
Aa31LG8G13130 Aethionema arabicum HOM05D006884 ORTHO05D008604 1.4e-210 736.9 677 58.3
BcaB02g06701 Brassica carinata HOM05D006884 ORTHO05D008604 3.0e-208 729.2 655 59.5
Thecc.09G259000 Theobroma cacao HOM05D006884 ORTHO05D008604 1.5e-207 726.9 486 75.5
PSO339G1719 Papaver somniferum HOM05D006884 ORTHO05D008604 4.7e-206 721.8 600 63.8
BcaC05g24709 Brassica carinata HOM05D006884 ORTHO05D008604 3.1e-205 719.2 675 57.0
SGA_v2.0_scaffold2G00907 Striga asiatica HOM05D006884 ORTHO05D008604 2.6e-204 716.1 633 60.5
MBI14_g07928_MAGBIO Magnolia biondii HOM05D006884 ORTHO05D008604 1.2e-201 707.2 604 64.2
Lsat_1_v5_gn_2_97900 Lactuca sativa HOM05D006884 ORTHO05D008604 2.3e-200 703.0 676 55.2
AUR62025009 Chenopodium quinoa HOM05D006884 ORTHO05D008604 1.5e-199 700.3 682 57.2
ATR0759G051 Amborella trichopoda HOM05D006884 ORTHO05D008604 4.3e-199 698.7 691 57.6
SalBow3G0672 Salvia bowleyana HOM05D006884 ORTHO05D008604 1.2e-196 690.6 686 55.1
AUR62006527 Chenopodium quinoa HOM05D006884 ORTHO05D008604 2.6e-196 689.5 676 56.7
CAN.G631.5 Capsicum annuum HOM05D006884 ORTHO05D008604 9.9e-196 687.6 617 59.3
Sabra09G0009400 Salix brachista HOM05D006884 ORTHO05D008604 1.6e-193 680.2 612 59.8
CsaV3_1G012990 Cucumis sativus L. HOM05D006884 ORTHO05D008604 7.8e-193 677.9 583 62.1
Os03g0288800 Oryza sativa ssp. japonica HOM05D006884 ORTHO05D008604 1.9e-186 656.8 673 55.3
Zm00001eb397080 Zea mays HOM05D006884 ORTHO05D008604 6.2e-182 641.7 664 54.5
HPP92_025089 Vanilla planifolia HOM05D006884 ORTHO05D008604 1.4e-178 630.6 687 52.0
SEGI_12216 Sequoiadendron giganteum HOM05D006884 ORTHO05D008604 2.5e-175 619.8 713 49.6
CDE09G0273 Ceratophyllum demersum HOM05D006884 ORTHO05D008604 2.8e-174 616.3 640 55.0
Sp4g05030 Schrenkiella parvula HOM05D006884 ORTHO05D008604 7.9e-169 598.2 591 55.2
Rhsim08G0043200 Rhododendron simsii HOM05D006884 ORTHO05D008604 7.2e-154 548.5 656 51.1
unitig_61.g26171 Utricularia gibba HOM05D006884 ORTHO05D008604 4.7e-137 492.7 610 47.5
Mapoly0043s0112 Marchantia polymorpha HOM05D006884 ORTHO05D008604 1.5e-135 487.6 697 43.5
SMO364G0331 Selaginella moellendorffii HOM05D006884 ORTHO05D008604 5.2e-128 462.6 454 51.8
Actinidia24083 Actinidia chinensis HOM05D006884 ORTHO05D008604 2.0e-127 460.7 303 72.6
Pp3c12_22070 Physcomitrium patens HOM05D006884 ORTHO05D008604 7.5e-119 432.2 707 41.7
arahy.Tifrunner.gnm1.ann1.REDW7M Arachis hypogaea HOM05D006884 ORTHO05D008604 3.5e-116 423.3 279 73.1
BcaB07g34161 Brassica carinata HOM05D006884 ORTHO05D008604 1.2e-111 408.3 357 57.1
Actinidia24084 Actinidia chinensis HOM05D006884 ORTHO05D008604 5.1e-67 260.0 312 51.6
Glyma.12G071233 Glycine max HOM05D006884 ORTHO05D008604 2.5e-66 257.7 218 61.5
Nn1g02428 Nelumbo nucifera HOM05D006884 ORTHO05D008604 1.4e-37 162.2 103 73.8
Nn3g17897 Nelumbo nucifera HOM05D006884 ORTHO05D008604 7.2e-37 159.8 103 71.8
Nn1g02077 Nelumbo nucifera HOM05D006884 ORTHO05D008604 2.1e-36 158.3 103 72.8
Nn4g22222 Nelumbo nucifera HOM05D006884 ORTHO05D008604 4.3e-34 150.6 99 70.7
SEGI_34075 Sequoiadendron giganteum HOM05D000114 ORTHO05D008604 8.5e-30 136.3 449 29.0
Nn3g19002 Nelumbo nucifera HOM05D005115 ORTHO05D005703 1.7e-25 122.1 93 65.6
Nn4g22225 Nelumbo nucifera HOM05D006884 ORTHO05D008604 1.7e-25 122.1 93 64.5
Glyma.12G071167 Glycine max HOM05D006884 ORTHO05D008604 6.3e-25 120.2 199 44.2
Cre12.g555200 Chlamydomonas reinhardtii HOM05D006884 ORTHO05D008604 2.6e-15 88.2 327 26.3
Nitab4.5_0002186g0030 Nicotiana tabacum HOM05D006884 ORTHO05D008604 3.8e-14 84.3 47 76.6
Aa31LG3G16570 Aethionema arabicum HOM05D006884 ORTHO05D008604 3.6e-12 77.8 183 31.7
Nn1g05254 Nelumbo nucifera HOM05D006884 ORTHO05D008604 8.0e-12 76.6 71 56.3
Nn1g03843 Nelumbo nucifera HOM05D006884 ORTHO05D008604 1.1e-08 66.2 50 66.0
AagrBONN_evm.TU.Sc2ySwM_117.1869 Anthoceros agrestis HOM05D006884 ORTHO05D008604 3.1e-08 64.7 212 29.7


User provided reference genes

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