Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR119G0486 Punica granatum HOM05D005420 ORTHO05D006524 1.8e-105 386.0 197 100.0
RcHm_v2.0_Chr2g0084451 Rosa chinensis HOM05D005420 ORTHO05D006524 3.3e-99 365.2 197 93.9
Ciclev10012405m.g Citrus clementina HOM05D005420 ORTHO05D006524 4.3e-99 364.8 195 94.4
FvH4_1g00160 Fragaria vesca HOM05D005420 ORTHO05D006524 5.6e-99 364.4 197 93.4
FAN28G0609 Fragaria x ananassa HOM05D005420 ORTHO05D006524 5.6e-99 364.4 197 93.4
VMungo1215G3385 Vigna mungo HOM05D005420 ORTHO05D006524 7.3e-99 364.0 197 93.4
MD15G1143300 Malus domestica HOM05D005420 ORTHO05D006524 9.5e-99 363.6 195 94.4
MD00G1087500 Malus domestica HOM05D005420 ORTHO05D006524 1.6e-98 362.8 196 94.4
Prupe.7G269700 Prunus persica HOM05D005420 ORTHO05D006524 2.1e-98 362.5 195 94.4
Potri.013G084300 Populus trichocarpa HOM05D005420 ORTHO05D006524 2.8e-98 362.1 195 93.3
TWI36G0345 Tripterygium wilfordii HOM05D005420 ORTHO05D006524 6.1e-98 360.9 197 91.9
CSS0017727 Camellia sinensis var. sinensis HOM05D005420 ORTHO05D006524 1.0e-97 360.1 197 92.4
CiPaw.02G124600 Carya illinoinensis HOM05D005420 ORTHO05D006524 1.0e-97 360.1 197 92.4
FAN26G3138 Fragaria x ananassa HOM05D005420 ORTHO05D006524 1.0e-97 360.1 197 91.9
Glyma.17G000800 Glycine max HOM05D005420 ORTHO05D006524 1.0e-97 360.1 197 91.4
arahy.Tifrunner.gnm1.ann1.D6NWCJ Arachis hypogaea HOM05D005420 ORTHO05D006524 1.4e-97 359.8 195 92.8
arahy.Tifrunner.gnm1.ann1.EMGW5K Arachis hypogaea HOM05D005420 ORTHO05D006524 1.4e-97 359.8 195 92.8
Cpa.g.sc151.6 Carica papaya HOM05D005420 ORTHO05D006524 1.8e-97 359.4 195 93.3
Atru.chr12.1712 Acer truncatum HOM05D005420 ORTHO05D006524 2.3e-97 359.0 195 92.3
CSS0022736 Camellia sinensis var. sinensis HOM05D005420 ORTHO05D006524 2.3e-97 359.0 197 91.9
Eucgr.H01455 Eucalyptus grandis HOM05D005420 ORTHO05D006524 2.3e-97 359.0 197 91.9
Glyma.07G273700 Glycine max HOM05D005420 ORTHO05D006524 3.1e-97 358.6 197 91.4
CANSAT56G1087 Cannabis sativa HOM05D005420 ORTHO05D006524 5.2e-97 357.8 199 92.5
Cfa008513 Carpinus fangiana HOM05D005420 ORTHO05D006524 6.8e-97 357.5 195 92.3
ClCG09G014850 Citrullus lanatus HOM05D005420 ORTHO05D006524 6.8e-97 357.5 194 92.3
Manes.12G003300 Manihot esculenta HOM05D005420 ORTHO05D006524 6.8e-97 357.5 195 92.8
QL10p064332 Quercus lobata HOM05D005420 ORTHO05D006524 6.8e-97 357.5 193 92.2
CiPaw.01G201600 Carya illinoinensis HOM05D005420 ORTHO05D006524 8.9e-97 357.1 194 92.8
CsaV3_7G022350 Cucumis sativus L. HOM05D005420 ORTHO05D006524 8.9e-97 357.1 199 91.0
FAN23G1410 Fragaria x ananassa HOM05D005420 ORTHO05D006524 1.2e-96 356.7 197 92.4
MSTRG.24552 Avicennia marina HOM05D005420 ORTHO05D006524 2.0e-96 355.9 197 90.9
Duzib177G0155 Durio zibethinus HOM05D005420 ORTHO05D006524 2.6e-96 355.5 195 91.3
Sabra13G0078900 Salix brachista HOM05D005420 ORTHO05D006524 5.8e-96 354.4 195 91.8
EL10Ac3g06165 Beta vulgaris HOM05D005420 ORTHO05D006524 7.5e-96 354.0 195 90.8
Cc03_g15990 Coffea canephora HOM05D005420 ORTHO05D006524 7.5e-96 354.0 197 89.8
Duzib128G1088 Durio zibethinus HOM05D005420 ORTHO05D006524 7.5e-96 354.0 197 90.9
Ah.07g203200 Amaranthus hybridus HOM05D005420 ORTHO05D006524 1.3e-95 353.2 195 89.7
THA.LOC104802345 Tarenaya hassleriana HOM05D005420 ORTHO05D006524 1.7e-95 352.8 192 92.2
Thecc.05G186000 Theobroma cacao HOM05D005420 ORTHO05D006524 1.7e-95 352.8 195 90.8
SalBow3G4646 Salvia bowleyana HOM05D005420 ORTHO05D006524 2.2e-95 352.4 197 90.4
HanXRQChr11g0343501 Helianthus annuus HOM05D005420 ORTHO05D006524 2.9e-95 352.1 197 90.4
TAR636G0539 Trochodendron aralioides HOM05D005420 ORTHO05D006524 2.9e-95 352.1 195 90.8
Dinv33245 Davidia involucrata HOM05D005420 ORTHO05D006524 3.7e-95 351.7 198 90.9
GSVIVG01038249001 Vitis vinifera HOM05D005420 ORTHO05D006524 4.9e-95 351.3 196 90.8
Lj4g0016379 Lotus japonicus HOM05D005420 ORTHO05D006524 8.3e-95 350.5 195 90.8
Sed0010932 Sechium edule HOM05D005420 ORTHO05D006524 1.4e-94 349.7 194 89.2
AUR62023710 Chenopodium quinoa HOM05D005420 ORTHO05D006524 1.9e-94 349.4 195 89.7
Nitab4.5_0000013g0040 Nicotiana tabacum HOM05D005420 ORTHO05D006524 1.9e-94 349.4 197 89.3
Nitab4.5_0008205g0010 Nicotiana tabacum HOM05D005420 ORTHO05D006524 1.9e-94 349.4 197 89.3
Peaxi162Scf01205g00032 Petunia axillaris HOM05D005420 ORTHO05D006524 2.4e-94 349.0 197 89.3
Lj6C285T2 Lonicera japonica HOM05D005420 ORTHO05D006524 3.2e-94 348.6 197 90.9
MBI07_g10354_MAGBIO Magnolia biondii HOM05D005420 ORTHO05D006524 3.2e-94 348.6 196 87.2
A05p04100 Brassica napus HOM05D005420 ORTHO05D006524 4.1e-94 348.2 193 90.7
BraA05t19397Z Brassica rapa HOM05D005420 ORTHO05D006524 4.1e-94 348.2 193 90.7
Gohir.A02G106300 Gossypium hirsutum HOM05D005420 ORTHO05D006524 4.1e-94 348.2 195 89.7
Gohir.D03G071700 Gossypium hirsutum HOM05D005420 ORTHO05D006524 4.1e-94 348.2 195 89.7
Gorai.003G088300 Gossypium raimondii HOM05D005420 ORTHO05D006524 4.1e-94 348.2 195 89.7
DCAR_005460 Daucus carota HOM05D005420 ORTHO05D006524 5.4e-94 347.8 199 89.9
Solyc08g015620.3 Solanum lycopersicum HOM05D005420 ORTHO05D006524 5.4e-94 347.8 197 88.8
Sopen08g005610 Solanum pennellii HOM05D005420 ORTHO05D006524 5.4e-94 347.8 197 88.8
HanXRQChr01g0023651 Helianthus annuus HOM05D005420 ORTHO05D006524 7.0e-94 347.4 193 90.7
AL4G42820 Arabidopsis lyrata HOM05D005420 ORTHO05D006524 9.2e-94 347.1 192 89.6
AT2G43945 Arabidopsis thaliana HOM05D005420 ORTHO05D006524 9.2e-94 347.1 192 89.6
BcaC02g12350 Brassica carinata HOM05D005420 ORTHO05D006524 9.2e-94 347.1 193 90.2
C04p04880 Brassica napus HOM05D005420 ORTHO05D006524 9.2e-94 347.1 193 90.2
BolC4t22118H Brassica oleracea HOM05D005420 ORTHO05D006524 9.2e-94 347.1 193 90.2
Carub.0004s2651 Capsella rubella HOM05D005420 ORTHO05D006524 9.2e-94 347.1 192 89.6
AUR62002482 Chenopodium quinoa HOM05D005420 ORTHO05D006524 9.2e-94 347.1 195 89.2
Thhalv10001571m.g Eutrema salsugineum HOM05D005420 ORTHO05D006524 9.2e-94 347.1 192 89.6
A03p24600 Brassica napus HOM05D005420 ORTHO05D006524 1.2e-93 346.7 192 89.1
Phvul.003G074600 Phaseolus vulgaris HOM05D005420 ORTHO05D006524 1.2e-93 346.7 197 88.3
Aqoxy1G01859 Aquilegia oxysepala HOM05D005420 ORTHO05D006524 1.6e-93 346.3 199 88.4
TAR365G1242 Trochodendron aralioides HOM05D005420 ORTHO05D006524 2.0e-93 345.9 195 89.2
C03p29330 Brassica napus HOM05D005420 ORTHO05D006524 2.7e-93 345.5 192 89.1
BolC3t15280H Brassica oleracea HOM05D005420 ORTHO05D006524 2.7e-93 345.5 192 89.1
BcaB02g08884 Brassica carinata HOM05D005420 ORTHO05D006524 4.6e-93 344.7 196 88.3
Rhsim09G0003700 Rhododendron simsii HOM05D005420 ORTHO05D006524 4.6e-93 344.7 202 89.1
THA.LOC104804283 Tarenaya hassleriana HOM05D005420 ORTHO05D006524 4.6e-93 344.7 192 90.6
ECA248G1232 Erigeron canadensis HOM05D005420 ORTHO05D006524 6.0e-93 344.4 197 88.3
Actinidia34566 Actinidia chinensis HOM05D005420 ORTHO05D006524 7.8e-93 344.0 197 89.3
Aa31LG1G25640 Aethionema arabicum HOM05D005420 ORTHO05D006524 7.8e-93 344.0 192 89.6
CARHR139120 Cardamine hirsuta HOM05D005420 ORTHO05D006524 1.0e-92 343.6 192 88.5
unitig_27.g25143 Utricularia gibba HOM05D005420 ORTHO05D006524 1.3e-92 343.2 193 90.2
BcaB06g29350 Brassica carinata HOM05D005420 ORTHO05D006524 2.3e-92 342.4 193 89.1
BraA03t11665Z Brassica rapa HOM05D005420 ORTHO05D006524 2.3e-92 342.4 192 88.0
Carub.0005s2660 Capsella rubella HOM05D005420 ORTHO05D006524 2.3e-92 342.4 197 86.8
Lsat_1_v5_gn_1_76981 Lactuca sativa HOM05D005420 ORTHO05D006524 2.3e-92 342.4 189 89.9
ATR0743G098 Amborella trichopoda HOM05D005420 ORTHO05D006524 3.0e-92 342.0 196 86.7
HPP92_024700 Vanilla planifolia HOM05D005420 ORTHO05D006524 3.9e-92 341.7 195 85.6
Migut.G00921 Erythranthe guttata HOM05D005420 ORTHO05D006524 5.0e-92 341.3 197 86.8
CDE09G0694 Ceratophyllum demersum HOM05D005420 ORTHO05D006524 6.6e-92 340.9 197 84.3
PSO675G2924 Papaver somniferum HOM05D005420 ORTHO05D006524 6.6e-92 340.9 197 86.8
PSO732G0217 Papaver somniferum HOM05D005420 ORTHO05D006524 6.6e-92 340.9 197 86.8
unitig_699.g19464 Utricularia gibba HOM05D005420 ORTHO05D006524 8.6e-92 340.5 193 88.6
Actinidia18399 Actinidia chinensis HOM05D005420 ORTHO05D006524 1.5e-91 339.7 197 88.3
SGA_v2.0_scaffold12G06218 Striga asiatica HOM05D005420 ORTHO05D006524 3.3e-91 338.6 203 84.7
vmacro00721 Vaccinium macrocarpon HOM05D005420 ORTHO05D006524 3.3e-91 338.6 205 87.3
TWI36G1305 Tripterygium wilfordii HOM05D005420 ORTHO05D006524 9.5e-91 337.0 184 91.3
Aa31LG10G14100 Aethionema arabicum HOM05D005420 ORTHO05D006524 1.2e-90 336.7 191 86.9
AT3G59870 Arabidopsis thaliana HOM05D005420 ORTHO05D006524 1.6e-90 336.3 197 85.3
GSVIVG01026140001 Vitis vinifera HOM05D005420 ORTHO05D006524 2.1e-90 335.9 197 85.8
Psat4g001320 Pisum sativum HOM05D005420 ORTHO05D006524 5.2e-89 331.3 195 86.7
Os01g0338600 Oryza sativa ssp. japonica HOM05D005420 ORTHO05D006524 9.8e-88 327.0 195 83.6
Zm00001eb159810 Zea mays HOM05D005420 ORTHO05D006524 1.1e-86 323.6 195 84.1
Sp4g26040 Schrenkiella parvula HOM05D005420 ORTHO05D006524 1.4e-86 323.2 179 88.8
SMO367G0538 Selaginella moellendorffii HOM05D005420 ORTHO05D006524 7.8e-85 317.4 187 84.5
Mapoly0136s0029 Marchantia polymorpha HOM05D005420 ORTHO05D006524 3.9e-84 315.1 187 85.0
SEGI_26827 Sequoiadendron giganteum HOM05D005420 ORTHO05D006524 8.6e-84 313.9 185 85.9
Pp3c8_21410 Physcomitrium patens HOM05D005420 ORTHO05D006524 2.5e-83 312.4 187 82.4
Pp3c24_16460 Physcomitrium patens HOM05D005420 ORTHO05D006524 1.1e-81 307.0 187 81.8
Haze_11131 Corylus avellana HOM05D005420 ORTHO05D006524 4.4e-80 301.6 333 53.8
Migut.N03031 Erythranthe guttata HOM05D005420 ORTHO05D006524 2.7e-77 292.4 196 80.6
TPR.G6015 Trifolium pratense HOM05D005420 ORTHO05D006524 1.0e-76 290.4 174 86.8
Manes.13G003200 Manihot esculenta HOM05D005420 ORTHO05D006524 5.1e-76 288.1 157 92.4
Nn7g37463 Nelumbo nucifera HOM05D005420 ORTHO05D006524 1.1e-73 280.4 165 85.5
Sc25g0003040 Simmondsia chinensis HOM05D005420 ORTHO05D006524 1.3e-71 273.5 152 90.1
Dinv24753 Davidia involucrata HOM05D005420 ORTHO05D006524 2.9e-71 272.3 152 91.4
Hund22588 Selenicereus undatus HOM05D005420 ORTHO05D006524 9.3e-70 267.3 150 90.0
Nn3g18334 Nelumbo nucifera HOM05D005420 ORTHO05D006524 7.8e-69 264.2 152 87.5
Medtr4g134910 Medicago truncatula HOM05D005420 ORTHO05D006524 1.6e-66 256.5 151 86.8
Lalb_Chr18g0044961 Lupinus albus HOM05D005420 ORTHO05D006524 2.8e-66 255.8 134 96.3
MCO05G102 Micromonas commoda HOM05D005420 ORTHO05D006524 1.5e-64 250.0 160 75.6
Cre16.g676450 Chlamydomonas reinhardtii HOM05D005420 ORTHO05D006524 3.4e-64 248.8 193 66.3
Atru.chr12.1711 Acer truncatum HOM05D005420 ORTHO05D006524 6.6e-60 234.6 191 69.1
PRCOL_00006877 Prasinoderma coloniale HOM05D005420 ORTHO05D006524 8.7e-60 234.2 160 70.6
Zm00001eb356860 Zea mays HOM05D005420 ORTHO05D006524 5.6e-59 231.5 195 65.1
Oeu022910.1 Olea europaea HOM05D005420 ORTHO05D006524 1.1e-57 227.3 133 86.5
Ca_13540_v3 Cicer arietinum L. HOM05D005420 ORTHO05D006524 5.1e-52 208.4 170 69.4
AagrBONN_evm.TU.Sc2ySwM_228.1821 Anthoceros agrestis HOM05D005420 ORTHO05D006524 4.2e-46 188.7 120 79.2
Sed0016168 Sechium edule HOM05D005420 ORTHO05D006524 4.5e-40 168.7 90 95.6
MBI07_g42072_MAGBIO Magnolia biondii HOM05D005420 ORTHO05D006524 6.5e-39 164.9 89 92.1
CDE02G3676 Ceratophyllum demersum HOM05D005420 ORTHO05D006524 1.4e-33 147.1 158 53.2
Pp3c20_1670 Physcomitrium patens HOM05D005420 ORTHO05D006524 3.1e-33 146.0 160 50.6
Eucgr.L00810 Eucalyptus grandis HOM05D005420 ORTHO05D006524 4.5e-32 142.1 82 84.1
Eucgr.H01440 Eucalyptus grandis HOM05D005420 ORTHO05D006524 1.5e-27 127.1 82 75.6
Lsat_1_v5_gn_1_75001 Lactuca sativa HOM05D005420 ORTHO05D006524 2.6e-24 116.3 78 71.8
Lsat_1_v5_gn_5_160100 Lactuca sativa HOM05D005420 ORTHO05D006524 3.2e-22 109.4 78 66.7
MSTRG.9265 Avicennia marina HOM05D005420 ORTHO05D006524 1.2e-21 107.5 82 69.5
CBR_g10867 Chara braunii HOM05D005420 ORTHO05D006524 1.8e-17 93.6 140 43.6
Lalb_Chr18g0044971 Lupinus albus HOM05D005420 ORTHO05D006524 1.8e-09 67.0 43 72.1
Sed0003231 Sechium edule HOM05D005420 ORTHO05D006524 5.9e-08 62.0 58 51.7


User provided reference genes

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