Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR119G0430 Punica granatum HOM05D004114 ORTHO05D004667 0.0e+00 1260.0 663 100.0
GSVIVG01025259001 Vitis vinifera HOM05D004114 ORTHO05D004667 1.5e-236 823.2 657 66.5
QL01p004694 Quercus lobata HOM05D004114 ORTHO05D004667 1.7e-232 809.7 684 63.5
COL.COLO4_07585 Corchorus olitorius HOM05D004114 ORTHO05D004667 1.6e-230 803.1 649 64.3
Manes.06G164400 Manihot esculenta HOM05D004114 ORTHO05D004667 3.5e-230 802.0 664 63.9
Dinv36259 Davidia involucrata HOM05D004114 ORTHO05D004667 1.3e-229 800.0 649 64.7
LjContig00081g0000990 Lotus japonicus HOM05D004114 ORTHO05D004667 5.1e-229 798.1 657 63.6
Dinv22178 Davidia involucrata HOM05D004114 ORTHO05D004667 6.6e-229 797.7 657 64.4
vmacro12717 Vaccinium macrocarpon HOM05D004114 ORTHO05D004667 4.3e-228 795.0 669 63.5
Actinidia23972 Actinidia chinensis HOM05D004114 ORTHO05D004667 2.1e-227 792.7 660 63.9
CSS0048735 Camellia sinensis var. sinensis HOM05D004114 ORTHO05D004667 6.2e-227 791.2 661 64.8
TWI34G1345 Tripterygium wilfordii HOM05D004114 ORTHO05D004667 1.4e-226 790.0 667 61.5
Sabra09G0038900 Salix brachista HOM05D004114 ORTHO05D004667 5.2e-226 788.1 687 60.0
Thecc.09G233600 Theobroma cacao HOM05D004114 ORTHO05D004667 6.9e-226 787.7 672 62.5
Gorai.006G128700 Gossypium raimondii HOM05D004114 ORTHO05D004667 8.9e-226 787.3 662 62.7
Duzib150G0789 Durio zibethinus HOM05D004114 ORTHO05D004667 1.5e-225 786.6 670 63.3
Gohir.D09G111100 Gossypium hirsutum HOM05D004114 ORTHO05D004667 3.4e-225 785.4 662 62.5
Cfa009771 Carpinus fangiana HOM05D004114 ORTHO05D004667 4.4e-225 785.0 656 63.3
Gohir.A09G114400 Gossypium hirsutum HOM05D004114 ORTHO05D004667 7.6e-225 784.3 666 62.5
Atru.chr3.2717 Acer truncatum HOM05D004114 ORTHO05D004667 1.7e-224 783.1 647 64.0
Potri.009G053400 Populus trichocarpa HOM05D004114 ORTHO05D004667 1.7e-224 783.1 687 60.8
Ca_06427_v3 Cicer arietinum L. HOM05D004114 ORTHO05D004667 3.8e-224 781.9 654 62.1
TAR633G1524 Trochodendron aralioides HOM05D004114 ORTHO05D004667 6.4e-224 781.2 626 65.3
MELO3C015192.2 Cucumis melo HOM05D004114 ORTHO05D004667 1.1e-223 780.4 661 61.6
Prupe.4G249300 Prunus persica HOM05D004114 ORTHO05D004667 1.1e-223 780.4 654 63.8
MD03G1175100 Malus domestica HOM05D004114 ORTHO05D004667 1.9e-223 779.6 666 63.1
FvH4_3g28860 Fragaria vesca HOM05D004114 ORTHO05D004667 2.4e-223 779.2 648 64.0
CANSAT54G0770 Cannabis sativa HOM05D004114 ORTHO05D004667 1.2e-222 776.9 673 61.5
CsaV3_1G042830 Cucumis sativus L. HOM05D004114 ORTHO05D004667 1.2e-222 776.9 661 61.1
arahy.Tifrunner.gnm1.ann1.49TU8N Arachis hypogaea HOM05D004114 ORTHO05D004667 4.6e-222 775.0 654 61.6
arahy.Tifrunner.gnm1.ann1.Q5U408 Arachis hypogaea HOM05D004114 ORTHO05D004667 4.6e-222 775.0 654 61.8
RcHm_v2.0_Chr5g0052041 Rosa chinensis HOM05D004114 ORTHO05D004667 2.3e-221 772.7 666 62.2
Glyma.02G304000 Glycine max HOM05D004114 ORTHO05D004667 5.1e-221 771.5 652 61.7
MD11G1193200 Malus domestica HOM05D004114 ORTHO05D004667 6.6e-221 771.2 664 62.0
TPR.G1262 Trifolium pratense HOM05D004114 ORTHO05D004667 1.9e-220 769.6 654 61.8
FAN16G1351 Fragaria x ananassa HOM05D004114 ORTHO05D004667 5.6e-220 768.1 666 62.5
Medtr5g096860 Medicago truncatula HOM05D004114 ORTHO05D004667 7.3e-220 767.7 654 61.2
Phvul.008G283500 Phaseolus vulgaris HOM05D004114 ORTHO05D004667 1.6e-219 766.5 654 61.0
Nn7g36204 Nelumbo nucifera HOM05D004114 ORTHO05D004667 1.1e-218 763.8 653 60.9
Glyma.08G335400 Glycine max HOM05D004114 ORTHO05D004667 5.3e-218 761.5 657 61.8
Phvul.006G062700 Phaseolus vulgaris HOM05D004114 ORTHO05D004667 9.0e-218 760.8 663 61.1
Glyma.18G070400 Glycine max HOM05D004114 ORTHO05D004667 1.5e-217 760.0 656 61.6
VMungo0647G1293 Vigna mungo HOM05D004114 ORTHO05D004667 3.4e-217 758.8 658 61.1
Aa31LG10G3520 Aethionema arabicum HOM05D004114 ORTHO05D004667 5.8e-217 758.1 655 59.1
FAN11G0384 Fragaria x ananassa HOM05D004114 ORTHO05D004667 5.8e-217 758.1 635 63.6
ClCG03G013250 Citrullus lanatus HOM05D004114 ORTHO05D004667 6.4e-216 754.6 661 60.2
Sp1g38010 Schrenkiella parvula HOM05D004114 ORTHO05D004667 2.4e-215 752.7 651 60.2
Peaxi162Scf00004g00237 Petunia axillaris HOM05D004114 ORTHO05D004667 1.2e-214 750.4 668 60.3
Cc00_g05950 Coffea canephora HOM05D004114 ORTHO05D004667 1.6e-214 750.0 671 59.9
CSS0035176 Camellia sinensis var. sinensis HOM05D004114 ORTHO05D004667 2.7e-214 749.2 661 62.3
Oeu015664.1 Olea europaea HOM05D004114 ORTHO05D004667 6.0e-214 748.0 664 59.5
THA.LOC104817907 Tarenaya hassleriana HOM05D004114 ORTHO05D004667 3.3e-212 742.3 663 57.0
Thhalv10011291m.g Eutrema salsugineum HOM05D004114 ORTHO05D004667 4.3e-212 741.9 651 58.8
DCAR_029951 Daucus carota HOM05D004114 ORTHO05D004667 7.4e-212 741.1 665 59.7
FAN21G1677 Fragaria x ananassa HOM05D004114 ORTHO05D004667 9.6e-212 740.7 635 63.0
arahy.Tifrunner.gnm1.ann1.V027MD Arachis hypogaea HOM05D004114 ORTHO05D004667 1.1e-210 737.3 655 58.9
arahy.Tifrunner.gnm1.ann1.JLH2AW Arachis hypogaea HOM05D004114 ORTHO05D004667 1.4e-210 736.9 655 58.9
AT1G51350 Arabidopsis thaliana HOM05D004114 ORTHO05D004667 1.8e-210 736.5 648 58.5
AL1G59170 Arabidopsis lyrata HOM05D004114 ORTHO05D004667 5.3e-210 734.9 657 58.0
CARHR041420 Cardamine hirsuta HOM05D004114 ORTHO05D004667 2.0e-209 733.0 648 57.4
Duzib168G0105 Durio zibethinus HOM05D004114 ORTHO05D004667 2.6e-209 732.6 668 59.7
BcaB07g33582 Brassica carinata HOM05D004114 ORTHO05D004667 4.5e-209 731.9 651 58.4
Solyc11g065750.2 Solanum lycopersicum HOM05D004114 ORTHO05D004667 7.6e-209 731.1 675 60.1
HanXRQChr07g0197461 Helianthus annuus HOM05D004114 ORTHO05D004667 1.3e-208 730.3 668 58.8
Lalb_Chr15g0082581 Lupinus albus HOM05D004114 ORTHO05D004667 1.3e-208 730.3 655 59.4
Psat2g005360 Pisum sativum HOM05D004114 ORTHO05D004667 8.4e-208 727.6 684 56.0
Aqoxy2G00130 Aquilegia oxysepala HOM05D004114 ORTHO05D004667 5.5e-207 724.9 655 58.0
Sopen11g025510 Solanum pennellii HOM05D004114 ORTHO05D004667 5.5e-207 724.9 675 59.4
BraA06t23464Z Brassica rapa HOM05D004114 ORTHO05D004667 9.3e-207 724.2 651 57.6
Ah.06g194200 Amaranthus hybridus HOM05D004114 ORTHO05D004667 1.6e-206 723.4 656 57.5
PSO339G0497 Papaver somniferum HOM05D004114 ORTHO05D004667 7.9e-206 721.1 663 58.8
Carub.0001s4022 Capsella rubella HOM05D004114 ORTHO05D004667 1.0e-205 720.7 647 57.7
Nitab4.5_0001587g0080 Nicotiana tabacum HOM05D004114 ORTHO05D004667 1.3e-205 720.3 670 59.4
BcaC08g43302 Brassica carinata HOM05D004114 ORTHO05D004667 3.0e-205 719.2 651 57.3
BolC6t35762H Brassica oleracea HOM05D004114 ORTHO05D004667 3.0e-205 719.2 651 57.3
Sc16g0011490 Simmondsia chinensis HOM05D004114 ORTHO05D004667 4.3e-204 715.3 652 59.2
Sed0020827 Sechium edule HOM05D004114 ORTHO05D004667 1.3e-203 713.8 628 61.0
SGA_v2.0_scaffold42G16101 Striga asiatica HOM05D004114 ORTHO05D004667 3.7e-203 712.2 676 56.2
Hund07507 Selenicereus undatus HOM05D004114 ORTHO05D004667 2.4e-202 709.5 644 57.6
MSTRG.12468 Avicennia marina HOM05D004114 ORTHO05D004667 6.9e-202 708.0 662 57.7
Migut.D00601 Erythranthe guttata HOM05D004114 ORTHO05D004667 9.0e-202 707.6 668 56.4
Eucgr.J00767 Eucalyptus grandis HOM05D004114 ORTHO05D004667 9.0e-202 707.6 531 67.2
Lalb_Chr18g0050571 Lupinus albus HOM05D004114 ORTHO05D004667 1.2e-201 707.2 650 58.2
arahy.Tifrunner.gnm1.ann1.4V7EDQ Arachis hypogaea HOM05D004114 ORTHO05D004667 4.9e-200 701.8 586 60.9
A06p02560 Brassica napus HOM05D004114 ORTHO05D004667 4.2e-199 698.7 639 57.0
C06p06490 Brassica napus HOM05D004114 ORTHO05D004667 7.1e-199 698.0 639 57.0
TWI60G1569 Tripterygium wilfordii HOM05D004114 ORTHO05D004667 7.1e-199 698.0 658 57.3
Lsat_1_v5_gn_2_97760 Lactuca sativa HOM05D004114 ORTHO05D004667 9.3e-199 697.6 669 56.7
AUR62000120 Chenopodium quinoa HOM05D004114 ORTHO05D004667 2.3e-197 693.0 658 56.4
FAN25G0168 Fragaria x ananassa HOM05D004114 ORTHO05D004667 8.7e-197 691.0 702 56.1
SalBow6G3263 Salvia bowleyana HOM05D004114 ORTHO05D004667 3.3e-196 689.1 712 52.9
CiPaw.13G160800 Carya illinoinensis HOM05D004114 ORTHO05D004667 1.8e-194 683.3 574 64.6
Ciclev10014795m.g Citrus clementina HOM05D004114 ORTHO05D004667 6.5e-192 674.9 548 64.2
unitig_699.g19135 Utricularia gibba HOM05D004114 ORTHO05D004667 1.2e-190 670.6 668 53.1
CDE05G0618 Ceratophyllum demersum HOM05D004114 ORTHO05D004667 4.6e-190 668.7 647 54.3
EL10Ac4g10252 Beta vulgaris HOM05D004114 ORTHO05D004667 7.4e-188 661.4 662 54.5
EL10Ac4g10249 Beta vulgaris HOM05D004114 ORTHO05D004667 2.4e-186 656.4 657 54.5
Nn2g15370 Nelumbo nucifera HOM05D004114 ORTHO05D004667 9.1e-186 654.4 546 61.4
Oeu063322.2 Olea europaea HOM05D004114 ORTHO05D004667 7.4e-180 634.8 654 53.7
Haze_23137 Corylus avellana HOM05D004114 ORTHO05D004667 9.1e-178 627.9 604 58.6
Oeu043295.1 Olea europaea HOM05D004114 ORTHO05D004667 2.6e-169 599.7 581 56.6
Nitab4.5_0002741g0170 Nicotiana tabacum HOM05D004114 ORTHO05D004667 1.0e-168 597.8 567 58.7
ATR0332G053 Amborella trichopoda HOM05D004114 ORTHO05D004667 1.5e-164 583.9 645 51.3
CAN.G599.3 Capsicum annuum HOM05D004114 ORTHO05D004667 2.0e-164 583.6 512 60.7
AUR62019301 Chenopodium quinoa HOM05D004114 ORTHO05D004667 2.8e-163 579.7 537 56.4
ECA238G2774 Erigeron canadensis HOM05D004114 ORTHO05D004667 6.3e-163 578.6 665 51.3
HPP92_020382 Vanilla planifolia HOM05D004114 ORTHO05D004667 1.1e-162 577.8 657 48.4
CDE05G0406 Ceratophyllum demersum HOM05D004114 ORTHO05D004667 1.8e-162 577.0 653 48.7
Zm00001eb115370 Zea mays HOM05D004114 ORTHO05D004667 6.5e-160 568.5 673 48.0
SEGI_01130 Sequoiadendron giganteum HOM05D004114 ORTHO05D004667 9.1e-154 548.1 660 46.8
Mapoly0179s0020 Marchantia polymorpha HOM05D004114 ORTHO05D004667 2.0e-145 520.4 655 44.7
Pp3c9_10010 Physcomitrium patens HOM05D004114 ORTHO05D004667 8.3e-139 498.4 649 43.5
Pp3c15_7590 Physcomitrium patens HOM05D004114 ORTHO05D004667 2.4e-138 496.9 649 43.5
Cpa.g.sc84.54 Carica papaya HOM05D004114 ORTHO05D004667 3.5e-137 493.0 437 58.8
TAR636G2716 Trochodendron aralioides HOM05D004114 ORTHO05D004667 5.0e-136 489.2 398 63.3
Zm00001eb166150 Zea mays HOM05D004114 ORTHO05D004667 3.1e-133 479.9 633 44.2
AagrBONN_evm.TU.Sc2ySwM_340.1837 Anthoceros agrestis HOM05D004114 ORTHO05D004667 1.9e-130 470.7 654 40.7
SMO347G0278 Selaginella moellendorffii HOM05D004114 ORTHO05D004667 2.5e-127 460.3 653 43.0
Lj1A330G26 Lonicera japonica HOM05D004114 ORTHO05D004667 2.2e-123 447.2 412 60.7
Psat3g081440 Pisum sativum HOM05D004114 ORTHO05D004667 7.8e-113 412.1 398 54.5
BcaC01g01258 Brassica carinata HOM05D004114 ORTHO05D004667 4.2e-82 310.1 387 45.5
Actinidia06341 Actinidia chinensis HOM05D004114 ORTHO05D004667 1.8e-80 304.7 243 65.8
Lj1A330G24 Lonicera japonica HOM05D004114 ORTHO05D004667 1.5e-79 301.6 251 62.9
Psat4g064240 Pisum sativum HOM05D004114 ORTHO05D004667 2.8e-78 297.4 429 42.4
CBR_g56096 Chara braunii HOM05D004114 ORTHO05D004667 7.4e-71 272.7 436 38.8
TAR636G0924 Trochodendron aralioides HOM05D004114 ORTHO05D004667 5.5e-66 256.5 217 63.6
Psat3g081480 Pisum sativum HOM05D003675 ORTHO05D004318 7.4e-63 246.1 234 54.3
C03p89880 Brassica napus HOM05D004114 ORTHO05D004667 1.6e-57 228.4 382 39.5
BolC3t21309H Brassica oleracea HOM05D004114 ORTHO05D004667 4.7e-57 226.9 383 37.9
Cpa.g.sc84.55 Carica papaya HOM05D004114 ORTHO05D004667 1.3e-54 218.8 199 62.3
arahy.Tifrunner.gnm1.ann1.MJQJ0M Arachis hypogaea HOM05D004114 ORTHO05D004667 1.2e-44 185.7 201 50.7
BcaC08g43303 Brassica carinata HOM05D004114 ORTHO05D004667 1.2e-44 185.7 293 39.9
C03p89900 Brassica napus HOM05D004114 ORTHO05D004667 3.8e-43 180.6 305 39.3
Psat5g252640 Pisum sativum HOM05D004114 ORTHO05D004667 1.2e-41 175.6 251 41.8
Os11g0638900 Oryza sativa ssp. japonica HOM05D004114 ORTHO05D004667 5.2e-40 170.2 167 53.3
BraA08t32330Z Brassica rapa HOM05D004114 ORTHO05D004667 1.4e-37 162.2 258 39.1
FAN23G2589 Fragaria x ananassa HOM05D004114 ORTHO05D004667 4.1e-37 160.6 156 58.3
Actinidia39399 Actinidia chinensis HOM05D004114 ORTHO05D004667 1.7e-35 155.2 236 44.1
Cre16.g664750 Chlamydomonas reinhardtii HOM05D004114 ORTHO05D004667 1.8e-32 145.2 606 26.2
arahy.Tifrunner.gnm1.ann1.HDR10P Arachis hypogaea HOM05D004114 ORTHO05D004667 1.3e-30 139.0 186 44.1
Oeu054838.1 Olea europaea HOM05D004114 ORTHO05D004667 9.2e-29 132.9 108 63.0
Haze_23136 Corylus avellana HOM05D004114 ORTHO05D004667 8.0e-25 119.8 98 58.2
FvH4_1g30480 Fragaria vesca HOM05D001826 ORTHO05D015538 2.3e-24 118.2 96 63.5
Actinidia06340 Actinidia chinensis HOM05D004114 ORTHO05D004667 2.2e-22 111.7 117 55.6
FAN19G0092 Fragaria x ananassa HOM05D004114 ORTHO05D004667 9.2e-21 106.3 137 50.4
FAN06G1142 Fragaria x ananassa HOM05D004114 ORTHO05D004667 2.0e-20 105.1 132 48.5
FAN26G0366 Fragaria x ananassa HOM05D004114 ORTHO05D004667 1.3e-19 102.4 132 49.2
FvH4_1g27570 Fragaria vesca HOM05D004114 ORTHO05D004667 2.3e-19 101.7 77 67.5
Sabra16G0157900 Salix brachista HOM05D004114 ORTHO05D004667 1.1e-18 99.4 78 64.1
FvH4_1g27340 Fragaria vesca HOM05D004114 ORTHO05D004667 1.5e-18 99.0 88 63.6
FvH4_7g05120 Fragaria vesca HOM05D004114 ORTHO05D004667 1.5e-18 99.0 77 66.2
FAN28G1325 Fragaria x ananassa HOM05D004114 ORTHO05D004667 8.0e-17 93.2 86 61.6
FAN19G1745 Fragaria x ananassa HOM05D004114 ORTHO05D004667 5.2e-16 90.5 66 72.7
C03p89890 Brassica napus HOM05D004114 ORTHO05D004667 2.7e-12 78.2 68 58.8
Psat1g158360 Pisum sativum HOM05D000344 ORTHO05D025701 1.0e-11 76.3 71 53.5
arahy.Tifrunner.gnm1.ann1.LY7CXU Arachis hypogaea HOM05D004114 ORTHO05D004667 3.9e-11 74.3 70 52.9
arahy.Tifrunner.gnm1.ann1.KKW1YJ Arachis hypogaea HOM05D004114 ORTHO05D004667 2.5e-10 71.6 67 58.2
arahy.Tifrunner.gnm1.ann1.WKB59G Arachis hypogaea HOM05D004114 ORTHO05D004667 2.8e-09 68.2 70 48.6
Cfa026112 Carpinus fangiana HOM05D004114 ORTHO05D125150 3.6e-09 67.8 153 32.7
Zm00001eb110990 Zea mays HOM05D000534 ORTHO05D000389 3.1e-08 64.7 67 56.7
A08p02990 Brassica napus HOM05D004114 ORTHO05D004667 1.5e-07 62.4 73 45.2
Cfa021076 Carpinus fangiana HOM05D029012 ORTHO05D034191 7.5e-07 60.1 220 27.7
EL10Ac3g06409 Beta vulgaris HOM05D004114 ORTHO05D004667 2.2e-06 58.5 54 46.3
C03p89870 Brassica napus HOM05D004114 ORTHO05D004667 2.2e-06 58.5 51 58.8
Dinv18208 Davidia involucrata HOM05D000103 ORTHO05D000049 3.7e-06 57.8 51 60.8


User provided reference genes

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