Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR119G0424 Punica granatum HOM05D004337 ORTHO05D005422 0.0e+00 1157.9 567 100.0
Potri.004G134500 Populus trichocarpa HOM05D004337 ORTHO05D005422 2.2e-289 998.4 567 85.7
Sabra04G0083600 Salix brachista HOM05D004337 ORTHO05D005422 2.1e-287 991.9 571 84.2
Potri.T045800 Populus trichocarpa HOM05D004337 ORTHO05D005422 1.8e-286 988.8 567 84.3
Potri.018G137500 Populus trichocarpa HOM05D004337 ORTHO05D005422 5.2e-286 987.3 567 84.1
CiPaw.15G184900 Carya illinoinensis HOM05D004337 ORTHO05D005422 1.5e-285 985.7 573 83.8
Actinidia36582 Actinidia chinensis HOM05D004337 ORTHO05D005422 1.7e-284 982.2 575 82.6
Dinv09624 Davidia involucrata HOM05D004337 ORTHO05D005422 6.3e-284 980.3 572 83.9
Eucgr.I00018 Eucalyptus grandis HOM05D004337 ORTHO05D005422 6.3e-284 980.3 563 83.7
Cfa020919 Carpinus fangiana HOM05D004337 ORTHO05D005422 1.1e-283 979.5 574 82.4
Manes.12G081000 Manihot esculenta HOM05D004337 ORTHO05D005422 3.1e-283 978.0 567 83.2
MELO3C003282.2 Cucumis melo HOM05D004337 ORTHO05D005422 1.2e-282 976.1 573 83.2
Actinidia19947 Actinidia chinensis HOM05D004337 ORTHO05D005422 2.0e-282 975.3 568 83.5
Sed0025757 Sechium edule HOM05D004337 ORTHO05D005422 1.7e-281 972.2 566 83.6
CsaV3_4G030000 Cucumis sativus L. HOM05D004337 ORTHO05D005422 2.3e-281 971.8 570 83.5
Thecc.01G146600 Theobroma cacao HOM05D004337 ORTHO05D005422 3.3e-280 968.0 569 82.8
GSVIVG01000243001 Vitis vinifera HOM05D004337 ORTHO05D005422 4.2e-280 967.6 574 82.2
Hma1.2p1_0296F.1_g116900 Hydrangea macrophylla HOM05D004337 ORTHO05D005422 5.5e-280 967.2 564 82.6
Gohir.A12G002300 Gossypium hirsutum HOM05D004337 ORTHO05D005422 1.2e-279 966.1 569 82.4
MBI06_g32147_MAGBIO Magnolia biondii HOM05D004337 ORTHO05D005422 2.1e-279 965.3 579 81.5
MD15G1140200 Malus domestica HOM05D004337 ORTHO05D005422 2.1e-279 965.3 576 80.7
QL10p037473 Quercus lobata HOM05D004337 ORTHO05D005422 3.6e-279 964.5 572 82.0
TAR376G0777 Trochodendron aralioides HOM05D004337 ORTHO05D005422 6.1e-279 963.8 572 81.5
Gorai.008G001400 Gossypium raimondii HOM05D004337 ORTHO05D005422 1.8e-278 962.2 576 81.4
Prupe.4G286100 Prunus persica HOM05D004337 ORTHO05D005422 2.3e-278 961.8 574 81.4
Ciclev10025224m.g Citrus clementina HOM05D004337 ORTHO05D005422 5.2e-278 960.7 568 81.7
Gohir.A05G375100 Gossypium hirsutum HOM05D004337 ORTHO05D005422 5.2e-278 960.7 569 82.1
Gohir.D04G040600 Gossypium hirsutum HOM05D004337 ORTHO05D005422 2.6e-277 958.4 569 81.9
Gorai.012G045800 Gossypium raimondii HOM05D004337 ORTHO05D005422 2.6e-277 958.4 569 81.9
Aqoxy5G01850 Aquilegia oxysepala HOM05D004337 ORTHO05D005422 3.7e-276 954.5 572 80.8
Atru.chr3.1466 Acer truncatum HOM05D004337 ORTHO05D005422 6.3e-276 953.7 575 80.9
Hund21761 Selenicereus undatus HOM05D004337 ORTHO05D005422 3.2e-275 951.4 572 81.3
CANSAT54G2432 Cannabis sativa HOM05D004337 ORTHO05D005422 5.4e-275 950.7 578 79.4
RcHm_v2.0_Chr3g0484771 Rosa chinensis HOM05D004337 ORTHO05D005422 1.3e-273 946.0 547 82.3
MSTRG.23236 Avicennia marina HOM05D004337 ORTHO05D005422 2.9e-273 944.9 570 80.2
Medtr3g098210 Medicago truncatula HOM05D004337 ORTHO05D005422 5.0e-273 944.1 572 80.4
Glyma.04G203800 Glycine max HOM05D004337 ORTHO05D005422 1.1e-272 943.0 568 80.5
Oeu046358.1 Olea europaea HOM05D004337 ORTHO05D005422 1.1e-272 943.0 571 80.2
arahy.Tifrunner.gnm1.ann1.X1BSDH Arachis hypogaea HOM05D004337 ORTHO05D005422 1.9e-272 942.2 543 82.0
TPR.G7800 Trifolium pratense HOM05D004337 ORTHO05D005422 1.9e-272 942.2 567 79.9
VMungo1309G0234 Vigna mungo HOM05D004337 ORTHO05D005422 2.5e-272 941.8 569 80.0
EL10Ac4g09743 Beta vulgaris HOM05D004337 ORTHO05D005422 7.3e-272 940.3 570 79.6
FvH4_1g25770 Fragaria vesca HOM05D004337 ORTHO05D005422 1.2e-271 939.5 576 79.2
Glyma.06G161400 Glycine max HOM05D004337 ORTHO05D005422 1.6e-271 939.1 556 80.9
FAN23G1824 Fragaria x ananassa HOM05D004337 ORTHO05D005422 1.0e-270 936.4 593 77.4
Lj1g0000957 Lotus japonicus HOM05D004337 ORTHO05D005422 1.4e-270 936.0 566 79.9
FAN28G1720 Fragaria x ananassa HOM05D004337 ORTHO05D005422 1.8e-270 935.6 593 77.2
Sc16g0009860 Simmondsia chinensis HOM05D004337 ORTHO05D005422 2.3e-270 935.3 552 81.0
FAN26G1467 Fragaria x ananassa HOM05D004337 ORTHO05D005422 3.1e-270 934.9 593 77.2
THA.LOC104818397 Tarenaya hassleriana HOM05D004337 ORTHO05D005422 4.0e-270 934.5 566 81.1
FAN19G0301 Fragaria x ananassa HOM05D004337 ORTHO05D005422 8.9e-270 933.3 593 77.2
Peaxi162Scf00353g00735 Petunia axillaris HOM05D004337 ORTHO05D005422 2.0e-269 932.2 572 79.0
Phvul.009G159800 Phaseolus vulgaris HOM05D004337 ORTHO05D005422 2.0e-269 932.2 576 78.5
THA.LOC104819366 Tarenaya hassleriana HOM05D004337 ORTHO05D005422 3.4e-269 931.4 569 79.8
Solyc05g056350.3 Solanum lycopersicum HOM05D004337 ORTHO05D005422 7.5e-269 930.2 574 78.0
Sopen05g034740 Solanum pennellii HOM05D004337 ORTHO05D005422 7.5e-269 930.2 574 77.9
CAN.G1156.26 Capsicum annuum HOM05D004337 ORTHO05D005422 9.8e-269 929.9 568 78.9
Lsat_1_v5_gn_2_40441 Lactuca sativa HOM05D004337 ORTHO05D005422 1.3e-268 929.5 573 79.1
COL.COLO4_33529 Corchorus olitorius HOM05D004337 ORTHO05D005422 1.7e-268 929.1 568 79.2
ATR1089G072 Amborella trichopoda HOM05D004337 ORTHO05D005422 2.9e-268 928.3 570 78.8
Oeu054207.1 Olea europaea HOM05D004337 ORTHO05D005422 3.7e-268 927.9 588 78.1
HPP92_009218 Vanilla planifolia HOM05D004337 ORTHO05D005422 8.3e-268 926.8 573 78.4
Psat5g057120 Pisum sativum HOM05D004337 ORTHO05D005422 1.4e-267 926.0 571 78.5
AUR62006971 Chenopodium quinoa HOM05D004337 ORTHO05D005422 2.4e-267 925.2 596 76.2
Thhalv10013045m.g Eutrema salsugineum HOM05D004337 ORTHO05D005422 4.1e-267 924.5 579 78.9
AUR62000615 Chenopodium quinoa HOM05D004337 ORTHO05D005422 7.0e-267 923.7 596 76.2
Lalb_Chr12g0202711 Lupinus albus HOM05D004337 ORTHO05D005422 7.0e-267 923.7 577 79.4
PGSC0003DMG400023451 Solanum tuberosum HOM05D004337 ORTHO05D005422 9.2e-267 923.3 581 76.8
Zm00001eb082160 Zea mays HOM05D004337 ORTHO05D005422 9.2e-267 923.3 576 78.1
Lalb_Chr07g0183961 Lupinus albus HOM05D004337 ORTHO05D005422 1.6e-266 922.5 573 79.6
Migut.H02542 Erythranthe guttata HOM05D004337 ORTHO05D005422 3.5e-266 921.4 570 77.5
Lj4A821G42 Lonicera japonica HOM05D004337 ORTHO05D005422 3.5e-266 921.4 552 81.7
TWI75G1462 Tripterygium wilfordii HOM05D004337 ORTHO05D005422 3.9e-265 917.9 570 78.1
unitig_736.g22365 Utricularia gibba HOM05D004337 ORTHO05D005422 5.0e-265 917.5 577 77.8
Nitab4.5_0000496g0240 Nicotiana tabacum HOM05D004337 ORTHO05D005422 1.1e-264 916.4 552 79.7
Oeu017633.3 Olea europaea HOM05D004337 ORTHO05D005422 1.1e-264 916.4 560 79.3
Zm00001eb422980 Zea mays HOM05D004337 ORTHO05D005422 1.5e-264 916.0 570 78.1
Rhsim10G0124700 Rhododendron simsii HOM05D004337 ORTHO05D005422 2.5e-264 915.2 673 68.8
Os04g0441900 Oryza sativa ssp. japonica HOM05D004337 ORTHO05D005422 4.3e-264 914.4 577 76.8
BolC9t59595H Brassica oleracea HOM05D004337 ORTHO05D005422 9.5e-264 913.3 581 77.5
PSO761G0180 Papaver somniferum HOM05D004337 ORTHO05D005422 9.5e-264 913.3 567 76.9
PSO210G2848 Papaver somniferum HOM05D004337 ORTHO05D005422 1.6e-263 912.5 575 76.3
C09p68510 Brassica napus HOM05D004337 ORTHO05D005422 8.0e-263 910.2 580 77.4
BraA10t44874Z Brassica rapa HOM05D004337 ORTHO05D005422 1.1e-262 909.8 580 77.4
Nitab4.5_0004764g0030 Nicotiana tabacum HOM05D004337 ORTHO05D005422 1.4e-262 909.4 561 78.8
AL6G19170 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 4.0e-262 907.9 576 77.4
ECA238G0122 Erigeron canadensis HOM05D004337 ORTHO05D005422 1.5e-261 906.0 570 77.2
A10p28250 Brassica napus HOM05D004337 ORTHO05D005422 2.0e-261 905.6 576 77.6
CARHR204490 Cardamine hirsuta HOM05D004337 ORTHO05D005422 3.4e-261 904.8 579 77.0
arahy.Tifrunner.gnm1.ann1.397MFZ Arachis hypogaea HOM05D004337 ORTHO05D005422 1.7e-260 902.5 588 75.2
SGA_v2.0_scaffold12G06278 Striga asiatica HOM05D004337 ORTHO05D005422 2.2e-260 902.1 586 75.4
HanXRQChr10g0285831 Helianthus annuus HOM05D004337 ORTHO05D005422 1.4e-259 899.4 540 79.6
CARHR189960 Cardamine hirsuta HOM05D004337 ORTHO05D005422 1.9e-259 899.0 574 76.5
Aa31LG11G2980 Aethionema arabicum HOM05D004337 ORTHO05D005422 3.2e-259 898.3 567 76.0
BcaB08g37252 Brassica carinata HOM05D004337 ORTHO05D005422 3.2e-259 898.3 578 76.6
Ca_17042_v3 Cicer arietinum L. HOM05D004337 ORTHO05D005422 7.1e-259 897.1 567 77.2
Carub.0006s0742 Capsella rubella HOM05D004337 ORTHO05D005422 1.6e-258 896.0 576 76.7
Nn5g27210 Nelumbo nucifera HOM05D004337 ORTHO05D005422 1.6e-258 896.0 521 83.1
AL6G34865 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 7.8e-258 893.6 574 76.0
BcaB04g19858 Brassica carinata HOM05D004337 ORTHO05D005422 1.3e-257 892.9 574 76.3
Thhalv10003872m.g Eutrema salsugineum HOM05D004337 ORTHO05D005422 1.7e-257 892.5 576 76.2
A09p06870 Brassica napus HOM05D004337 ORTHO05D005422 6.6e-257 890.6 574 76.3
Aa31LG3G18040 Aethionema arabicum HOM05D004337 ORTHO05D005422 4.3e-256 887.9 575 76.3
BcaC04g23504 Brassica carinata HOM05D004337 ORTHO05D005422 5.6e-256 887.5 572 76.4
BolC9t53677H Brassica oleracea HOM05D004337 ORTHO05D005422 7.3e-256 887.1 572 76.4
Carub.0006s2135 Capsella rubella HOM05D004337 ORTHO05D005422 7.3e-256 887.1 574 75.6
AT5G23575 Arabidopsis thaliana HOM05D004337 ORTHO05D005422 9.5e-256 886.7 574 75.4
BraA09t36334Z Brassica rapa HOM05D004337 ORTHO05D005422 9.5e-256 886.7 574 76.0
C09p07600 Brassica napus HOM05D004337 ORTHO05D005422 1.2e-255 886.3 574 76.0
Dinv10851 Davidia involucrata HOM05D004337 ORTHO05D005422 6.2e-255 884.0 522 83.0
Sp2g23620 Schrenkiella parvula HOM05D004337 ORTHO05D005422 2.3e-254 882.1 572 76.2
A06p34530 Brassica napus HOM05D004337 ORTHO05D005422 4.4e-253 877.9 572 75.3
BraA06t26382Z Brassica rapa HOM05D004337 ORTHO05D005422 5.8e-253 877.5 572 75.3
C07p43970 Brassica napus HOM05D004337 ORTHO05D005422 1.3e-252 876.3 572 75.3
DCAR_009619 Daucus carota HOM05D004337 ORTHO05D005422 1.3e-252 876.3 609 73.9
BolC7t44925H Brassica oleracea HOM05D004337 ORTHO05D005422 4.9e-252 874.4 572 75.0
SGA_v2.0_scaffold51G18842 Striga asiatica HOM05D004337 ORTHO05D005422 8.3e-252 873.6 571 76.5
AT5G08500 Arabidopsis thaliana HOM05D004337 ORTHO05D005422 1.1e-243 846.7 522 79.3
Peaxi162Scf00651g00114 Petunia axillaris HOM05D004337 ORTHO05D005422 2.7e-242 842.0 576 72.7
Sp6g34400 Schrenkiella parvula HOM05D004337 ORTHO05D005422 4.6e-242 841.3 582 73.5
CSS0021638 Camellia sinensis var. sinensis HOM05D004337 ORTHO05D005422 1.3e-241 839.7 496 82.7
vmacro12739 Vaccinium macrocarpon HOM05D004337 ORTHO05D005422 6.2e-239 830.9 901 51.5
SMO116G0204 Selaginella moellendorffii HOM05D004337 ORTHO05D005422 1.2e-237 826.6 556 71.8
Mapoly0020s0073 Marchantia polymorpha HOM05D004337 ORTHO05D005422 3.2e-235 818.5 563 70.3
AL6G18970 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 9.3e-227 790.4 870 51.3
Gohir.D12G002000 Gossypium hirsutum HOM05D004337 ORTHO05D005422 6.2e-215 751.1 569 67.0
Duzib264G1201 Durio zibethinus HOM05D004337 ORTHO05D005422 1.4e-214 750.0 567 66.7
Pp3c5_10010 Physcomitrium patens HOM05D004337 ORTHO05D005422 2.6e-213 745.7 578 63.8
Ah.06g188230 Amaranthus hybridus HOM05D004337 ORTHO05D005422 3.3e-208 728.8 516 72.1
Cc00_g00820 Coffea canephora HOM05D004337 ORTHO05D005422 6.1e-202 708.0 403 85.9
CBR_g44530 Chara braunii HOM05D004337 ORTHO05D005422 6.3e-199 698.0 560 58.6
CDE05G2996 Ceratophyllum demersum HOM05D004337 ORTHO05D005422 2.8e-191 672.5 428 74.8
Haze_19353 Corylus avellana HOM05D004337 ORTHO05D005422 6.8e-177 624.8 343 91.3
AL6G18990 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 2.0e-168 596.7 436 71.6
SHI38349 Sapria himalayana HOM05D004337 ORTHO05D005422 4.3e-163 578.9 424 71.9
Cre09.g397900 Chlamydomonas reinhardtii HOM05D004337 ORTHO05D005422 3.2e-150 536.2 580 48.6
ClCG04G002690 Citrullus lanatus HOM05D004337 ORTHO05D005422 3.0e-148 529.6 310 85.5
AL6G19200 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 5.4e-134 482.3 447 62.2
MCO10G243 Micromonas commoda HOM05D004337 ORTHO05D005422 5.6e-115 419.1 342 57.6
Haze_27034 Corylus avellana HOM05D004337 ORTHO05D005422 3.5e-101 373.2 462 43.5
Cfa024513 Carpinus fangiana HOM05D004337 ORTHO05D005422 2.4e-97 360.5 518 37.8
PRCOL_00006172 Prasinoderma coloniale HOM05D004337 ORTHO05D005422 2.0e-96 357.5 499 40.9
Cpa.g.sc3593.1 Carica papaya HOM05D004337 ORTHO05D005422 6.3e-90 335.9 188 88.8
Cpa.g.sc138.38 Carica papaya HOM05D004337 ORTHO05D005422 7.9e-85 318.9 210 69.0
Haze_19352 Corylus avellana HOM05D004337 ORTHO05D005422 2.4e-81 307.4 196 70.4
AL6G19020 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 2.6e-75 287.3 219 67.6
MCO07G426 Micromonas commoda HOM05D004337 ORTHO05D005422 1.8e-73 281.2 421 39.7
SalBow8G1257 Salvia bowleyana HOM05D004337 ORTHO05D005422 1.0e-71 275.4 214 62.6
SalBow8G3722 Salvia bowleyana HOM05D004337 ORTHO05D005422 1.0e-71 275.4 214 62.6
ClCG04G002680 Citrullus lanatus HOM05D004337 ORTHO05D005422 2.5e-70 270.8 160 78.8
PRCOL_00005640 Prasinoderma coloniale HOM05D004337 ORTHO05D005422 1.3e-66 258.5 366 36.9
Cc00_g00810 Coffea canephora HOM05D004337 ORTHO05D005422 1.5e-62 245.0 164 69.5
HPP92_009290 Vanilla planifolia HOM05D004337 ORTHO05D005422 8.5e-55 219.2 226 54.0
CDE05G3583 Ceratophyllum demersum HOM05D004337 ORTHO05D005422 2.0e-43 181.4 112 82.1
Hma1.2p1_0641F.1_g194250 Hydrangea macrophylla HOM05D004337 ORTHO05D005422 6.6e-31 139.8 71 94.4
Psat3g077400 Pisum sativum HOM05D004337 ORTHO05D005422 5.2e-28 130.2 117 53.8
BcaC04g21668 Brassica carinata HOM05D004337 ORTHO05D021976 2.6e-27 127.9 73 76.7
C09p29160 Brassica napus HOM05D004337 ORTHO05D021976 4.4e-27 127.1 69 79.7
Hma1.2p1_0641F.1_g194230 Hydrangea macrophylla HOM05D004337 ORTHO05D005422 3.2e-17 94.4 104 51.9
SEGI_12766 Sequoiadendron giganteum HOM05D004337 ORTHO05D005422 1.5e-14 85.5 42 85.7
AUR62044487 Chenopodium quinoa HOM05D004337 ORTHO05D021976 2.5e-14 84.7 49 69.4
AUR62044516 Chenopodium quinoa HOM05D004337 ORTHO05D021976 2.5e-14 84.7 49 69.4
AUR62038356 Chenopodium quinoa HOM05D001477 ORTHO05D021976 6.2e-13 80.1 43 76.7
SHI11402 Sapria himalayana HOM05D000039 ORTHO05D006865 1.4e-12 79.0 48 68.8
CDE05G0837 Ceratophyllum demersum HOM05D004337 ORTHO05D043897 6.6e-07 60.1 50 54.0
Pp3c6_20370 Physcomitrium patens HOM05D004337 ORTHO05D043897 5.6e-06 57.0 42 66.7


User provided reference genes

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