Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR119G0405 Punica granatum HOM05D001404 ORTHO05D009009 2.4e-231 805.1 382 100.0
GSVIVG01020147001 Vitis vinifera HOM05D001404 ORTHO05D009009 2.7e-150 535.8 376 64.1
Ciclev10031837m.g Citrus clementina HOM05D001404 ORTHO05D009009 3.5e-150 535.4 379 66.8
QL03p067270 Quercus lobata HOM05D001404 ORTHO05D009009 2.5e-148 529.3 376 64.4
Eucgr.B02570 Eucalyptus grandis HOM05D001404 ORTHO05D009009 7.4e-148 527.7 376 63.0
CSS0043132 Camellia sinensis var. sinensis HOM05D001404 ORTHO05D002309 9.6e-148 527.3 377 66.0
Thecc.02G239700 Theobroma cacao HOM05D001404 ORTHO05D009009 3.7e-147 525.4 377 64.7
Duzib268G0371 Durio zibethinus HOM05D001404 ORTHO05D009009 1.1e-146 523.9 377 64.2
CiPaw.05G145400 Carya illinoinensis HOM05D001404 ORTHO05D009009 4.0e-146 521.9 376 65.2
Potri.010G037600 Populus trichocarpa HOM05D001404 ORTHO05D009009 4.5e-145 518.5 385 64.7
Actinidia08188 Actinidia chinensis HOM05D001404 ORTHO05D009009 5.8e-145 518.1 377 64.5
Gohir.A03G143500 Gossypium hirsutum HOM05D001404 ORTHO05D009009 1.3e-144 516.9 377 64.2
RcHm_v2.0_Chr4g0444821 Rosa chinensis HOM05D001404 ORTHO05D009009 1.3e-144 516.9 376 62.5
Gorai.005G187100 Gossypium raimondii HOM05D001404 ORTHO05D009009 2.9e-144 515.8 377 64.2
Manes.01G195300 Manihot esculenta HOM05D001404 ORTHO05D009009 3.2e-143 512.3 377 62.6
FAN12G1952 Fragaria x ananassa HOM05D001404 ORTHO05D009009 2.1e-142 509.6 381 61.9
TWI36G0457 Tripterygium wilfordii HOM05D001404 ORTHO05D009009 6.0e-142 508.1 405 59.5
MD16G1084700 Malus domestica HOM05D001404 ORTHO05D009009 2.5e-140 502.7 376 60.4
FvH4_4g35220 Fragaria vesca HOM05D001404 ORTHO05D009009 4.3e-140 501.9 387 61.0
TAR374G0908 Trochodendron aralioides HOM05D001404 ORTHO05D009009 1.3e-139 500.4 377 62.6
FAN07G0845 Fragaria x ananassa HOM05D001404 ORTHO05D009009 3.7e-139 498.8 384 59.6
Thhalv10018717m.g Eutrema salsugineum HOM05D001404 ORTHO05D009009 4.0e-138 495.4 378 61.6
CARHR063240 Cardamine hirsuta HOM05D001404 ORTHO05D002309 6.9e-138 494.6 377 62.1
Sp5g25260 Schrenkiella parvula HOM05D001404 ORTHO05D009009 1.2e-137 493.8 378 60.8
Prupe.1G261400 Prunus persica HOM05D001404 ORTHO05D009009 2.6e-137 492.7 376 59.6
HanXRQChr17g0570291 Helianthus annuus HOM05D001404 ORTHO05D009009 3.4e-137 492.3 376 61.7
Psat2g112600 Pisum sativum HOM05D001404 ORTHO05D009009 3.4e-137 492.3 376 60.1
vmacro01204 Vaccinium macrocarpon HOM05D001404 ORTHO05D009009 4.5e-137 491.9 399 60.2
AT1G70150 Arabidopsis thaliana HOM05D001404 ORTHO05D009009 5.8e-137 491.5 377 59.9
Aa31LG4G10750 Aethionema arabicum HOM05D001404 ORTHO05D009009 1.7e-136 490.0 398 59.3
COL.COLO4_36283 Corchorus olitorius HOM05D001404 ORTHO05D002309 1.7e-136 490.0 361 62.6
Lj2g0007192 Lotus japonicus HOM05D001404 ORTHO05D009009 1.7e-136 490.0 376 60.4
SHI05275 Sapria himalayana HOM05D001404 ORTHO05D009009 2.2e-136 489.6 377 60.2
BraA07t31231Z Brassica rapa HOM05D001404 ORTHO05D009009 8.4e-136 487.6 380 61.1
FAN22G1682 Fragaria x ananassa HOM05D001404 ORTHO05D009009 8.4e-136 487.6 384 59.6
Lalb_Chr05g0217271 Lupinus albus HOM05D001404 ORTHO05D009009 1.4e-135 486.9 376 60.9
AL2G29430 Arabidopsis lyrata HOM05D001404 ORTHO05D009009 1.9e-135 486.5 378 60.6
A07p36630 Brassica napus HOM05D001404 ORTHO05D009009 3.2e-135 485.7 380 60.5
THA.LOC104822951 Tarenaya hassleriana HOM05D001404 ORTHO05D009009 5.5e-135 485.0 377 60.2
SalBow2G3155 Salvia bowleyana HOM05D001404 ORTHO05D009009 9.3e-135 484.2 377 60.2
Carub.0002s1684 Capsella rubella HOM05D001404 ORTHO05D009009 1.0e-133 480.7 378 60.1
C06p44030 Brassica napus HOM05D001404 ORTHO05D009009 1.8e-133 479.9 383 60.8
BolC6t39476H Brassica oleracea HOM05D001404 ORTHO05D009009 1.8e-133 479.9 383 60.8
Cc11_g14260 Coffea canephora HOM05D001404 ORTHO05D009009 3.9e-133 478.8 381 61.4
Medtr5g036470 Medicago truncatula HOM05D001404 ORTHO05D009009 3.9e-133 478.8 376 60.6
MSTRG.7858 Avicennia marina HOM05D001404 ORTHO05D009009 5.1e-133 478.4 379 59.9
Sed0021588 Sechium edule HOM05D001404 ORTHO05D009009 1.5e-132 476.9 404 55.4
Ca_24163_v3 Cicer arietinum L. HOM05D001404 ORTHO05D002309 3.3e-132 475.7 374 60.7
Sc14g0008480 Simmondsia chinensis HOM05D001355 ORTHO05D003368 4.3e-132 475.3 376 58.0
Oeu028546.1 Olea europaea HOM05D001404 ORTHO05D009009 5.7e-132 474.9 376 60.9
Lsat_1_v5_gn_4_6141 Lactuca sativa HOM05D001404 ORTHO05D009009 7.4e-132 474.6 368 59.0
PGSC0003DMG401022613 Solanum tuberosum HOM05D001404 ORTHO05D009009 9.7e-132 474.2 376 58.5
CANSAT01G0136 Cannabis sativa HOM05D001404 ORTHO05D009009 1.3e-131 473.8 378 60.3
Glyma.01G037400 Glycine max HOM05D001404 ORTHO05D009009 2.2e-131 473.0 380 59.2
VMungo1215G3058 Vigna mungo HOM05D001404 ORTHO05D009009 2.2e-131 473.0 376 60.9
Sopen05g002340 Solanum pennellii HOM05D001404 ORTHO05D009009 8.2e-131 471.1 376 58.5
EL10Ac6g13111 Beta vulgaris HOM05D001404 ORTHO05D009009 4.1e-130 468.8 376 58.8
Rhsim12G0051800 Rhododendron simsii HOM05D001404 ORTHO05D009009 1.2e-129 467.2 467 49.9
Solyc05g006410.3 Solanum lycopersicum HOM05D001404 ORTHO05D009009 2.6e-129 466.1 376 58.2
Aqoxy3G00874 Aquilegia oxysepala HOM05D001404 ORTHO05D009009 7.7e-129 464.5 381 55.9
PSO161G0115 Papaver somniferum HOM05D001404 ORTHO05D009009 7.7e-129 464.5 379 59.6
SalBow2G3257 Salvia bowleyana HOM05D001404 ORTHO05D009009 1.3e-128 463.8 377 58.9
arahy.Tifrunner.gnm1.ann1.2TJ8DU Arachis hypogaea HOM05D001404 ORTHO05D009009 2.9e-128 462.6 393 57.8
BcaC08g46464 Brassica carinata HOM05D001404 ORTHO05D009009 2.9e-128 462.6 384 59.4
CAN.G159.8 Capsicum annuum HOM05D001404 ORTHO05D009009 8.5e-128 461.1 376 57.4
Cpa.g.sc1960.1 Carica papaya HOM05D001404 ORTHO05D009009 9.4e-127 457.6 347 62.5
Migut.L01385 Erythranthe guttata HOM05D001404 ORTHO05D009009 1.8e-125 453.4 375 57.1
Hund25295 Selenicereus undatus HOM05D001404 ORTHO05D009009 2.0e-124 449.9 376 59.0
Nn4g22934 Nelumbo nucifera HOM05D001404 ORTHO05D009009 7.4e-124 448.0 343 60.9
Lj6A799T78 Lonicera japonica HOM05D001404 ORTHO05D009009 6.3e-123 444.9 382 56.5
Peaxi162Scf00828g00020 Petunia axillaris HOM05D001404 ORTHO05D009009 1.1e-122 444.1 376 55.9
ECA234G1431 Erigeron canadensis HOM05D001404 ORTHO05D002309 1.5e-121 440.3 361 57.1
Haze_12124 Corylus avellana HOM05D001404 ORTHO05D002309 2.0e-121 439.9 348 60.1
Nitab4.5_0003602g0020 Nicotiana tabacum HOM05D001404 ORTHO05D009009 2.0e-121 439.9 419 51.8
Os07g0481000 Oryza sativa ssp. japonica HOM05D001404 ORTHO05D009009 2.6e-121 439.5 377 54.4
CDE10G0936 Ceratophyllum demersum HOM05D001404 ORTHO05D009009 5.0e-120 435.3 376 56.4
SGA_v2.0_scaffold8G04270 Striga asiatica HOM05D001404 ORTHO05D009009 9.7e-116 421.0 386 54.1
ClCG05G024960 Citrullus lanatus HOM05D001404 ORTHO05D009009 6.3e-115 418.3 347 56.8
Sabra10G0028400 Salix brachista HOM05D001404 ORTHO05D009009 1.4e-109 400.6 321 58.6
Nitab4.5_0002312g0090 Nicotiana tabacum HOM05D001404 ORTHO05D009009 1.1e-106 391.0 333 57.1
Gohir.D02G166800 Gossypium hirsutum HOM05D001404 ORTHO05D009009 9.1e-106 387.9 303 60.7
TPR.G17319 Trifolium pratense HOM05D001404 ORTHO05D009009 3.2e-103 379.4 351 53.0
arahy.Tifrunner.gnm1.ann1.VUK41S Arachis hypogaea HOM05D001404 ORTHO05D009009 2.7e-102 376.3 382 51.3
CsaV3_5G031930 Cucumis sativus L. HOM05D001404 ORTHO05D009009 6.8e-101 371.7 308 55.8
Dinv24916 Davidia involucrata HOM05D001404 ORTHO05D009009 7.5e-100 368.2 273 62.6
Zm00001eb321400 Zea mays HOM05D001404 ORTHO05D009009 7.5e-100 368.2 378 48.1
AagrBONN_evm.TU.Sc2ySwM_368.625 Anthoceros agrestis HOM05D001404 ORTHO05D009009 1.5e-95 354.0 392 46.7
unitig_749.g13260 Utricularia gibba HOM05D001404 ORTHO05D009009 1.2e-94 350.9 396 46.0
HPP92_002468 Vanilla planifolia HOM05D001404 ORTHO05D009009 4.7e-94 349.0 305 55.4
AUR62026309 Chenopodium quinoa HOM05D001404 ORTHO05D009009 8.0e-94 348.2 390 47.9
Mapoly0056s0134 Marchantia polymorpha HOM05D001404 ORTHO05D009009 2.3e-93 346.7 377 45.1
Pp3c9_21180 Physcomitrium patens HOM05D001404 ORTHO05D009009 8.6e-88 328.2 379 43.5
Phvul.002G076800 Phaseolus vulgaris HOM05D001404 ORTHO05D009009 3.3e-87 326.2 284 55.3
FAN17G2278 Fragaria x ananassa HOM05D001404 ORTHO05D009009 2.3e-85 320.1 248 58.5
Glyma.02G027500 Glycine max HOM05D001404 ORTHO05D009009 4.4e-84 315.8 266 57.9
SMO091G0008 Selaginella moellendorffii HOM05D001404 ORTHO05D009009 1.0e-77 294.7 379 42.0
Lj4g0012021 Lotus japonicus HOM05D001404 ORTHO05D009009 1.4e-77 294.3 376 43.1
SMO238G0008 Selaginella moellendorffii HOM05D001404 ORTHO05D009009 1.4e-74 284.3 357 43.7
SalBow2G0480 Salvia bowleyana HOM05D001404 ORTHO05D009009 1.2e-70 271.2 307 46.3
ATR0712G045 Amborella trichopoda HOM05D001404 ORTHO05D009009 3.2e-66 256.5 215 57.2
CBR_g72156 Chara braunii HOM05D001404 ORTHO05D009009 1.0e-48 198.4 311 35.4
Hma1.2p1_0057F.1_g031900 Hydrangea macrophylla HOM05D007895 ORTHO05D010017 2.9e-43 180.3 376 31.9
Nitab4.5_0007482g0010 Nicotiana tabacum HOM05D007895 ORTHO05D010017 2.9e-43 180.3 375 33.3
Nitab4.5_0003254g0060 Nicotiana tabacum HOM05D007895 ORTHO05D010017 8.4e-43 178.7 375 33.6
Cfa000239 Carpinus fangiana HOM05D007895 ORTHO05D010017 1.1e-42 178.3 381 33.3
ATR0752G052 Amborella trichopoda HOM05D007895 ORTHO05D010017 3.2e-42 176.8 377 32.4
Oeu033195.1 Olea europaea HOM05D007895 ORTHO05D010017 3.2e-42 176.8 375 34.1
FvH4_3g02321 Fragaria vesca HOM05D007895 ORTHO05D010017 4.2e-42 176.4 371 33.2
Gohir.D05G172500 Gossypium hirsutum HOM05D007895 ORTHO05D010017 7.1e-42 175.6 376 33.0
Gorai.009G177700 Gossypium raimondii HOM05D007895 ORTHO05D010017 7.1e-42 175.6 376 33.0
MBI18_g12452_MAGBIO Magnolia biondii HOM05D007895 ORTHO05D010017 1.6e-41 174.5 373 33.0
TAR627G0668 Trochodendron aralioides HOM05D007895 ORTHO05D010017 1.6e-41 174.5 374 33.2
Sp7g20040 Schrenkiella parvula HOM05D007895 ORTHO05D010017 2.1e-41 174.1 370 32.4
CAN.G569.16 Capsicum annuum HOM05D007895 ORTHO05D010017 2.7e-41 173.7 374 32.1
Phvul.006G150500 Phaseolus vulgaris HOM05D007895 ORTHO05D010017 2.7e-41 173.7 372 33.9
VMungo0540G0331 Vigna mungo HOM05D007895 ORTHO05D010017 2.7e-41 173.7 372 34.1
Glyma.15G106800 Glycine max HOM05D007895 ORTHO05D010017 3.5e-41 173.3 372 33.6
Lj6g0014344 Lotus japonicus HOM05D007895 ORTHO05D010017 4.6e-41 172.9 370 33.2
Gohir.A05G169300 Gossypium hirsutum HOM05D007895 ORTHO05D010017 6.0e-41 172.6 376 32.7
Manes.17G037900 Manihot esculenta HOM05D007895 ORTHO05D010017 6.0e-41 172.6 374 32.4
Aqoxy1G03251 Aquilegia oxysepala HOM05D007895 ORTHO05D010017 7.9e-41 172.2 373 32.7
Glyma.13G205700 Glycine max HOM05D007895 ORTHO05D010017 1.7e-40 171.0 377 33.7
TWI63G1238 Tripterygium wilfordii HOM05D007895 ORTHO05D010017 1.7e-40 171.0 374 33.7
EL10Ac8g20029 Beta vulgaris HOM05D007895 ORTHO05D010017 2.3e-40 170.6 376 30.9
Potri.011G001800 Populus trichocarpa HOM05D007895 ORTHO05D010017 2.3e-40 170.6 380 32.6
Thecc.06G218400 Theobroma cacao HOM05D007895 ORTHO05D010017 3.0e-40 170.2 374 32.4
QL05p073549 Quercus lobata HOM05D007895 ORTHO05D010017 3.9e-40 169.9 375 32.8
QL05p073789 Quercus lobata HOM05D007895 ORTHO05D010017 3.9e-40 169.9 375 32.8
Ciclev10017921m.g Citrus clementina HOM05D007895 ORTHO05D010017 6.6e-40 169.1 373 32.7
TPR.G7647 Trifolium pratense HOM05D007895 ORTHO05D010017 1.5e-39 167.9 372 33.9
COL.COLO4_31754 Corchorus olitorius HOM05D007895 ORTHO05D010017 1.9e-39 167.5 374 32.4
DCAR_004211 Daucus carota HOM05D007895 ORTHO05D010017 2.5e-39 167.2 373 31.4
MD10G1319500 Malus domestica HOM05D007895 ORTHO05D010017 2.5e-39 167.2 374 32.9
Psat1g181720 Pisum sativum HOM05D007895 ORTHO05D010017 3.3e-39 166.8 370 33.5
Rhsim13G0155200 Rhododendron simsii HOM05D007895 ORTHO05D010017 4.3e-39 166.4 369 33.3
CSS0036667 Camellia sinensis var. sinensis HOM05D007895 ORTHO05D010017 5.6e-39 166.0 373 33.2
Dinv13880 Davidia involucrata HOM05D007895 ORTHO05D010017 5.6e-39 166.0 359 33.1
Duzib235G1140 Durio zibethinus HOM05D007895 ORTHO05D010017 5.6e-39 166.0 375 32.5
BolC1t01543H Brassica oleracea HOM05D007895 ORTHO05D010017 9.6e-39 165.2 372 31.2
Carub.0007s1948 Capsella rubella HOM05D007895 ORTHO05D010017 9.6e-39 165.2 373 30.6
THA.LOC104806298 Tarenaya hassleriana HOM05D007895 ORTHO05D010017 9.6e-39 165.2 375 31.7
BraA01t01263Z Brassica rapa HOM05D007895 ORTHO05D010017 1.3e-38 164.9 372 30.9
Mapoly0063s0045 Marchantia polymorpha HOM05D007895 ORTHO05D010017 1.3e-38 164.9 375 30.9
BcaNung02255 Brassica carinata HOM05D007895 ORTHO05D010017 1.6e-38 164.5 370 30.5
RcHm_v2.0_Chr5g0003541 Rosa chinensis HOM05D007895 ORTHO05D010017 1.6e-38 164.5 371 32.6
Medtr2g022910 Medicago truncatula HOM05D007895 ORTHO05D010017 2.8e-38 163.7 372 33.3
BcaC09g51191 Brassica carinata HOM05D007895 ORTHO05D010017 3.6e-38 163.3 370 30.8
C01p15890 Brassica napus HOM05D007895 ORTHO05D010017 3.6e-38 163.3 370 30.8
MD05G1343800 Malus domestica HOM05D007895 ORTHO05D010017 6.2e-38 162.5 373 31.9
AagrBONN_evm.TU.Sc2ySwM_117.3222 Anthoceros agrestis HOM05D007895 ORTHO05D010017 1.1e-37 161.8 377 28.6
Sabra11G0000700 Salix brachista HOM05D007895 ORTHO05D010017 1.1e-37 161.8 380 32.1
Prupe.4G023000 Prunus persica HOM05D007895 ORTHO05D010017 4.0e-37 159.8 374 32.4
Lsat_1_v5_gn_7_17681 Lactuca sativa HOM05D007895 ORTHO05D010017 1.2e-36 158.3 371 28.0
PGR004G2409 Punica granatum HOM05D007895 ORTHO05D010017 1.2e-36 158.3 373 31.6
Lalb_Chr18g0056281 Lupinus albus HOM05D007895 ORTHO05D010017 1.5e-36 157.9 371 32.3
Atru.chr11.1937 Acer truncatum HOM05D001404 ORTHO05D002309 3.4e-36 156.8 203 40.4
SMO351G0184 Selaginella moellendorffii HOM05D007895 ORTHO05D010017 7.6e-36 155.6 368 31.0
Cc09_g01830 Coffea canephora HOM05D007895 ORTHO05D010017 1.7e-35 154.5 377 30.5
AagrBONN_evm.TU.Sc2ySwM_117.3431 Anthoceros agrestis HOM05D001404 ORTHO05D009009 1.1e-34 151.8 152 48.0
AUR62026503 Chenopodium quinoa HOM05D001404 ORTHO05D009009 2.4e-34 150.6 176 46.0
Ah.09g235010 Amaranthus hybridus HOM05D007895 ORTHO05D010017 3.2e-34 150.2 367 30.5
A01p13190 Brassica napus HOM05D007895 ORTHO05D010017 1.9e-31 141.0 371 27.5
CDE02G0632 Ceratophyllum demersum HOM05D007895 ORTHO05D010017 6.5e-27 125.9 375 28.3
MD13G1085400 Malus domestica HOM05D001404 ORTHO05D009009 1.9e-26 124.4 86 67.4
SEGI_39493 Sequoiadendron giganteum HOM05D001404 ORTHO05D009009 2.5e-26 124.0 128 48.4
SalBow7G1134 Salvia bowleyana HOM05D001404 ORTHO05D009009 6.0e-25 119.4 127 44.1
Mapoly0021s0002 Marchantia polymorpha HOM05D007895 ORTHO05D010017 1.1e-23 115.2 244 30.3
MCO10G058 Micromonas commoda HOM05D001404 ORTHO05D009009 1.5e-23 114.8 451 25.9
ATR0712G115 Amborella trichopoda HOM05D001404 ORTHO05D009009 1.9e-23 114.4 74 67.6
TPR.G17205 Trifolium pratense HOM05D001404 ORTHO05D009009 1.4e-21 108.2 73 65.8
Lalb_Chr15g0087511 Lupinus albus HOM05D007895 ORTHO05D010017 1.2e-20 105.1 199 35.7
CDE05G3159 Ceratophyllum demersum HOM05D007895 ORTHO05D010017 2.0e-20 104.4 297 30.6
SEGI_25303 Sequoiadendron giganteum HOM05D001404 ORTHO05D009009 5.9e-20 102.8 132 40.9
SEGI_33690 Sequoiadendron giganteum HOM05D001404 ORTHO05D009009 3.8e-19 100.1 126 42.1
HanXRQChr17g0570121 Helianthus annuus HOM05D001404 ORTHO05D009009 2.7e-17 94.0 82 50.0
Duzib251G0488 Durio zibethinus HOM05D001404 ORTHO05D009009 3.9e-16 90.1 64 62.5
Lsat_1_v5_gn_1_78741 Lactuca sativa HOM05D000538 ORTHO05D009009 1.2e-12 78.6 64 53.1
Lalb_Chr15g0087501 Lupinus albus HOM05D007895 ORTHO05D010017 2.5e-10 70.9 117 36.8
Lsat_1_v5_gn_1_40080 Lactuca sativa HOM05D000207 ORTHO05D000191 3.2e-10 70.5 58 53.4
Duzib160G0114 Durio zibethinus HOM05D007895 ORTHO05D010017 2.1e-09 67.8 216 25.5
MELO3C012030.2 Cucumis melo HOM05D001404 ORTHO05D009009 1.5e-07 61.6 35 77.1
C06p36300 Brassica napus HOM05D001404 ORTHO05D009009 2.5e-07 60.8 51 60.8
Sc05g0009090 Simmondsia chinensis HOM05D007895 ORTHO05D010017 2.5e-07 60.8 83 42.2
Medtr5g036455 Medicago truncatula HOM05D001404 ORTHO05D009009 1.7e-06 58.2 70 42.9
Duzib268G1504 Durio zibethinus HOM05D000344 ORTHO05D000934 4.8e-06 56.6 73 41.1


User provided reference genes

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