Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR119G0370 Punica granatum HOM05D005647 ORTHO05D006968 0.0e+00 1276.2 659 100.0
QL03p069904 Quercus lobata HOM05D005647 ORTHO05D006968 2.2e-123 447.2 682 44.7
GSVIVG01025064001 Vitis vinifera HOM05D005647 ORTHO05D006968 1.3e-120 438.0 698 43.7
Rhsim01G0223800 Rhododendron simsii HOM05D005647 ORTHO05D006968 1.7e-120 437.6 696 43.0
Ciclev10027867m.g Citrus clementina HOM05D005647 ORTHO05D006968 1.5e-119 434.5 336 66.7
Thecc.09G331200 Theobroma cacao HOM05D005647 ORTHO05D006968 5.6e-119 432.6 660 42.7
CiPaw.13G102300 Carya illinoinensis HOM05D005647 ORTHO05D006968 1.2e-118 431.4 651 45.9
CANSAT54G2414 Cannabis sativa HOM05D005647 ORTHO05D006968 2.1e-118 430.6 332 67.8
TWI75G1819 Tripterygium wilfordii HOM05D005647 ORTHO05D006968 1.8e-117 427.6 376 59.6
Atru.chr3.3782 Acer truncatum HOM05D005647 ORTHO05D006968 5.2e-117 426.0 390 59.0
Actinidia00810 Actinidia chinensis HOM05D005647 ORTHO05D006968 1.2e-116 424.9 695 41.9
Manes.04G028600 Manihot esculenta HOM05D005647 ORTHO05D006968 2.0e-116 424.1 512 49.6
COL.COLO4_18417 Corchorus olitorius HOM05D005647 ORTHO05D006968 7.5e-116 422.2 339 65.5
MD11G1117900 Malus domestica HOM05D005647 ORTHO05D006968 1.3e-115 421.4 335 65.4
Gohir.A05G099200 Gossypium hirsutum HOM05D005647 ORTHO05D006968 1.1e-114 418.3 463 52.5
Cfa011418 Carpinus fangiana HOM05D005647 ORTHO05D006968 9.2e-114 415.2 686 43.1
Potri.009G025800 Populus trichocarpa HOM05D005647 ORTHO05D006968 9.2e-114 415.2 629 43.7
Gohir.D05G099100 Gossypium hirsutum HOM05D005647 ORTHO05D006968 2.7e-113 413.7 400 57.0
Cc01_g12040 Coffea canephora HOM05D005647 ORTHO05D006968 4.6e-113 412.9 408 55.4
TAR623G0344 Trochodendron aralioides HOM05D005647 ORTHO05D006968 7.8e-113 412.1 341 64.5
Duzib150G0770 Durio zibethinus HOM05D005647 ORTHO05D006968 1.0e-112 411.8 490 50.2
Eucgr.A02758 Eucalyptus grandis HOM05D005647 ORTHO05D006968 3.0e-112 410.2 710 40.0
RcHm_v2.0_Chr5g0062191 Rosa chinensis HOM05D005647 ORTHO05D006968 3.0e-112 410.2 333 62.5
FvH4_3g34550 Fragaria vesca HOM05D005647 ORTHO05D006968 6.6e-112 409.1 333 62.5
RcHm_v2.0_Chr4g0385531 Rosa chinensis HOM05D005647 ORTHO05D006968 6.6e-112 409.1 333 62.8
FAN11G0841 Fragaria x ananassa HOM05D005647 ORTHO05D006968 1.1e-111 408.3 333 62.5
Lj1A178T39 Lonicera japonica HOM05D005647 ORTHO05D006968 1.5e-111 407.9 661 41.3
Gorai.009G103000 Gossypium raimondii HOM05D005647 ORTHO05D006968 1.9e-111 407.5 646 42.6
FAN21G3075 Fragaria x ananassa HOM05D005647 ORTHO05D006968 7.3e-111 405.6 333 61.9
FAN25G1201 Fragaria x ananassa HOM05D005647 ORTHO05D006968 7.3e-111 405.6 333 62.2
Sed0021109 Sechium edule HOM05D005647 ORTHO05D006968 7.3e-111 405.6 334 62.0
FAN16G2614 Fragaria x ananassa HOM05D005647 ORTHO05D006968 4.7e-110 402.9 333 61.3
ClCG02G020580 Citrullus lanatus HOM05D005647 ORTHO05D006968 1.1e-109 401.7 334 60.8
Nitab4.5_0000022g0330 Nicotiana tabacum HOM05D005647 ORTHO05D006968 1.1e-109 401.7 713 40.4
Solyc06g005200.3 Solanum lycopersicum HOM05D005647 ORTHO05D006968 1.2e-108 398.3 354 61.3
Sopen06g001190 Solanum pennellii HOM05D005647 ORTHO05D006968 2.0e-108 397.5 354 61.0
Nitab4.5_0008854g0020 Nicotiana tabacum HOM05D005647 ORTHO05D006968 5.8e-108 396.0 714 39.6
Actinidia03769 Actinidia chinensis HOM05D005647 ORTHO05D006968 1.3e-107 394.8 663 41.8
Hund18946 Selenicereus undatus HOM05D005647 ORTHO05D006968 1.3e-107 394.8 338 61.2
PSO541G4932 Papaver somniferum HOM05D005647 ORTHO05D006968 1.7e-107 394.4 335 60.3
Lsat_1_v5_gn_5_167021 Lactuca sativa HOM05D005647 ORTHO05D006968 4.9e-107 392.9 405 55.3
Haze_23998 Corylus avellana HOM05D005647 ORTHO05D006968 2.4e-106 390.6 346 63.3
MELO3C025708.2 Cucumis melo HOM05D005647 ORTHO05D006968 5.4e-106 389.4 358 57.0
PSO447G0260 Papaver somniferum HOM05D005647 ORTHO05D006968 7.1e-106 389.0 357 56.9
DCAR_005295 Daucus carota HOM05D005647 ORTHO05D006968 1.2e-105 388.3 331 61.0
PGSC0003DMG400033668 Solanum tuberosum HOM05D005647 ORTHO05D006968 1.6e-105 387.9 706 40.1
PSO675G6613 Papaver somniferum HOM05D005647 ORTHO05D006968 7.8e-105 385.6 329 60.2
Cpa.g.sc139.4 Carica papaya HOM05D005647 ORTHO05D006968 2.3e-104 384.0 297 66.0
ECA248G2619 Erigeron canadensis HOM05D005647 ORTHO05D006968 6.6e-104 382.5 658 40.7
Sc14g0000850 Simmondsia chinensis HOM05D005647 ORTHO05D006968 8.6e-104 382.1 337 60.5
Glyma.13G196800 Glycine max HOM05D005647 ORTHO05D006968 1.5e-103 381.3 336 59.8
MSTRG.21166 Avicennia marina HOM05D005647 ORTHO05D006968 3.3e-103 380.2 339 59.6
Sabra09G0017200 Salix brachista HOM05D005647 ORTHO05D000187 7.3e-103 379.0 624 41.7
Ca_01361_v3 Cicer arietinum L. HOM05D005647 ORTHO05D006968 1.2e-102 378.3 337 59.3
HanXRQChr14g0429211 Helianthus annuus HOM05D005647 ORTHO05D006968 1.2e-102 378.3 351 57.8
THA.LOC104809599 Tarenaya hassleriana HOM05D005647 ORTHO05D006968 1.6e-102 377.9 334 57.2
AT5G59980 Arabidopsis thaliana HOM05D005647 ORTHO05D006968 3.6e-102 376.7 418 51.4
SGA_v2.0_scaffold61G21232 Striga asiatica HOM05D005647 ORTHO05D006968 4.7e-102 376.3 362 55.8
VMungo1080G1709 Vigna mungo HOM05D005647 ORTHO05D006968 1.1e-101 375.2 336 59.8
Lj3g0017565 Lotus japonicus HOM05D005647 ORTHO05D006968 1.8e-101 374.4 336 59.2
MBI14_g34527_MAGBIO Magnolia biondii HOM05D005647 ORTHO05D006968 1.8e-101 374.4 323 61.0
AL8G36550 Arabidopsis lyrata HOM05D005647 ORTHO05D006968 2.3e-101 374.0 340 55.9
AUR62001855 Chenopodium quinoa HOM05D005647 ORTHO05D006968 8.9e-101 372.1 362 55.5
Phvul.L002619 Phaseolus vulgaris HOM05D005647 ORTHO05D006968 2.0e-100 370.9 336 57.4
EL10Ac7g15937 Beta vulgaris HOM05D005647 ORTHO05D006968 2.6e-100 370.5 369 55.6
Ah.15g096320 Amaranthus hybridus HOM05D005647 ORTHO05D006968 4.4e-100 369.8 365 55.6
Aqoxy4G03106 Aquilegia oxysepala HOM05D005647 ORTHO05D006968 5.8e-100 369.4 338 55.9
Carub.0004s0912 Capsella rubella HOM05D005647 ORTHO05D006968 7.6e-100 369.0 373 53.1
Aa31LG1G12110 Aethionema arabicum HOM05D005647 ORTHO05D006968 9.9e-100 368.6 474 46.0
vmacro14498 Vaccinium macrocarpon HOM05D005647 ORTHO05D006968 4.9e-99 366.3 690 38.8
TPR.G11621 Trifolium pratense HOM05D005647 ORTHO05D006968 8.3e-99 365.5 337 56.1
TPR.G17867 Trifolium pratense HOM05D005647 ORTHO05D006968 1.1e-98 365.2 337 55.5
Psat5g282040 Pisum sativum HOM05D005647 ORTHO05D006968 3.2e-98 363.6 337 55.8
CAN.G200.2 Capsicum annuum HOM05D005647 ORTHO05D006968 4.1e-98 363.2 661 39.5
Peaxi162Scf00006g01310 Petunia axillaris HOM05D005647 ORTHO05D006968 5.4e-98 362.8 333 59.5
Lalb_Chr24g0394311 Lupinus albus HOM05D005647 ORTHO05D006968 2.7e-97 360.5 504 44.8
Thhalv10012856m.g Eutrema salsugineum HOM05D005647 ORTHO05D006968 7.8e-97 359.0 340 55.3
Medtr2g096090 Medicago truncatula HOM05D005647 ORTHO05D006968 7.8e-97 359.0 337 55.8
C02p11970 Brassica napus HOM05D005647 ORTHO05D006968 1.3e-96 358.2 498 45.4
BraA02t05750Z Brassica rapa HOM05D005647 ORTHO05D006968 1.3e-96 358.2 498 45.4
BcaB05g22600 Brassica carinata HOM05D005647 ORTHO05D006968 1.7e-96 357.8 343 57.4
A02p06680 Brassica napus HOM05D005647 ORTHO05D006968 3.9e-96 356.7 538 43.3
Prupe.6G088000 Prunus persica HOM05D005647 ORTHO05D006968 1.5e-95 354.8 650 38.6
BolC2t07297H Brassica oleracea HOM05D005647 ORTHO05D006968 5.6e-95 352.8 412 51.2
Migut.D02155 Erythranthe guttata HOM05D005647 ORTHO05D006968 2.1e-94 350.9 371 53.9
Sp6g21650 Schrenkiella parvula HOM05D005647 ORTHO05D006968 1.8e-93 347.8 356 53.9
BcaC04g19653 Brassica carinata HOM05D005647 ORTHO05D006968 8.9e-93 345.5 441 47.2
BolC9t58115H Brassica oleracea HOM05D005647 ORTHO05D006968 8.9e-93 345.5 441 47.2
Oeu058515.3 Olea europaea HOM05D005647 ORTHO05D006968 8.9e-93 345.5 445 47.6
C09p52480 Brassica napus HOM05D005647 ORTHO05D006968 2.6e-92 344.0 441 46.7
BcaB08g36205 Brassica carinata HOM05D005647 ORTHO05D006968 9.9e-92 342.0 447 46.8
SalBow3G2669 Salvia bowleyana HOM05D005647 ORTHO05D006968 1.3e-91 341.7 370 51.4
SalBow3G1239 Salvia bowleyana HOM05D005647 ORTHO05D006968 1.7e-91 341.3 370 51.4
BraA10t43800Z Brassica rapa HOM05D005647 ORTHO05D006968 2.9e-91 340.5 610 39.0
Aa31LG5G21920 Aethionema arabicum HOM05D005647 ORTHO05D006968 4.2e-90 336.7 305 56.7
A10p17190 Brassica napus HOM05D005647 ORTHO05D006968 1.2e-89 335.1 610 39.0
ATR0787G117 Amborella trichopoda HOM05D005647 ORTHO05D006968 2.1e-89 334.3 307 54.7
Aqoxy4G03104_Aqoxy4G03103 Aquilegia oxysepala HOM05D005647 ORTHO05D006968 1.0e-88 332.0 335 54.6
CDE08G0081 Ceratophyllum demersum HOM05D005647 ORTHO05D006968 1.7e-88 331.3 323 52.3
unitig_736.g22430 Utricularia gibba HOM05D005647 ORTHO05D006968 1.1e-87 328.6 361 50.4
THA.LOC104813123 Tarenaya hassleriana HOM05D005647 ORTHO05D006968 5.6e-87 326.2 305 56.1
CDE02G4018 Ceratophyllum demersum HOM05D005647 ORTHO05D006968 3.6e-86 323.6 323 51.4
arahy.Tifrunner.gnm1.ann1.7X2355 Arachis hypogaea HOM05D005647 ORTHO05D006968 4.8e-86 323.2 387 47.3
arahy.Tifrunner.gnm1.ann1.W04KXW Arachis hypogaea HOM05D005647 ORTHO05D006968 4.4e-84 316.6 387 46.8
arahy.Tifrunner.gnm1.ann1.S4SLQI Arachis hypogaea HOM05D005647 ORTHO05D006968 2.1e-73 281.2 521 36.5
Gorai.013G129300 Gossypium raimondii HOM05D005647 ORTHO05D006968 1.9e-71 274.6 279 54.5
arahy.Tifrunner.gnm1.ann1.ZDAZ4C Arachis hypogaea HOM05D005647 ORTHO05D006968 1.3e-70 271.9 526 36.1
Nn2g13828 Nelumbo nucifera HOM05D005647 ORTHO05D006968 4.6e-65 253.4 204 63.2
VMungo1127G1784 Vigna mungo HOM05D005647 ORTHO05D006968 1.1e-63 248.8 204 63.7
AUR62009649 Chenopodium quinoa HOM05D005647 ORTHO05D006968 2.8e-62 244.2 234 55.1
Pp3c23_18130 Physcomitrium patens HOM05D005647 ORTHO05D006968 2.4e-61 241.1 355 39.2
Mapoly0041s0094 Marchantia polymorpha HOM05D005647 ORTHO05D006968 3.8e-59 233.8 355 37.2
Os12g0175900 Oryza sativa ssp. japonica HOM05D005647 ORTHO05D006968 1.5e-52 211.8 300 42.3
SEGI_32841 Sequoiadendron giganteum HOM05D005647 ORTHO05D006968 9.4e-50 202.6 236 43.6
Zm00001eb163100 Zea mays HOM05D005647 ORTHO05D006968 7.4e-47 193.0 419 33.7
CsaV3_6G022020 Cucumis sativus L. HOM05D005647 ORTHO05D006968 4.2e-42 177.2 160 56.2
Aqoxy4G01384 Aquilegia oxysepala HOM05D005647 ORTHO05D006968 6.7e-32 143.3 113 61.9
VMungo1127G0608 Vigna mungo HOM05D005647 ORTHO05D006968 6.3e-30 136.7 136 52.9
VMungo1127G1495 Vigna mungo HOM05D005647 ORTHO05D006968 1.1e-29 136.0 123 61.8
MBI03_g45445_MAGBIO Magnolia biondii HOM05D005647 ORTHO05D006968 3.5e-28 131.0 124 55.6
Dinv32824 Davidia involucrata HOM05D005647 ORTHO05D006968 1.0e-24 119.4 464 28.7
Cre02.g088050 Chlamydomonas reinhardtii HOM05D005647 ORTHO05D006968 1.5e-23 115.5 276 28.3
SMO348G0064 Selaginella moellendorffii HOM05D005647 ORTHO05D006968 6.3e-22 110.2 128 40.6
Lsat_1_v5_gn_5_100621 Lactuca sativa HOM05D005647 ORTHO05D006968 8.3e-22 109.8 115 53.9
CARHR273620 Cardamine hirsuta HOM05D005647 ORTHO05D006968 5.9e-20 103.6 139 41.7
EL10Ac9g22529 Beta vulgaris HOM05D005647 ORTHO05D006968 1.3e-19 102.4 86 57.0
SEGI_06158 Sequoiadendron giganteum HOM05D005647 ORTHO05D006968 6.8e-16 90.1 121 41.3
MBI10_g46876_MAGBIO Magnolia biondii HOM05D005647 ORTHO05D006968 7.5e-15 86.7 83 50.6
QL03p025644 Quercus lobata HOM05D005647 ORTHO05D006968 1.3e-14 85.9 63 66.7
MCO02G042 Micromonas commoda HOM05D005647 ORTHO05D006968 2.7e-12 78.2 177 24.9
MBI14_g07932_MAGBIO Magnolia biondii HOM05D002922 ORTHO05D006968 5.6e-10 70.5 128 38.3
Gohir.D11G155700 Gossypium hirsutum HOM05D001229 ORTHO05D011852 7.3e-10 70.1 95 38.9
Gorai.007G165900 Gossypium raimondii HOM05D001229 ORTHO05D011852 7.3e-10 70.1 95 38.9
C07p28110 Brassica napus HOM05D008189 ORTHO05D031905 1.7e-06 58.9 71 45.1


User provided reference genes

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