Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR119G0364 Punica granatum HOM05D005286 ORTHO05D006348 4.9e-296 1020.4 514 100.0
Thecc.01G137300 Theobroma cacao HOM05D005286 ORTHO05D006348 2.9e-192 675.6 517 67.3
CiPaw.03G118000 Carya illinoinensis HOM05D005286 ORTHO05D006348 1.2e-190 670.2 515 68.2
QL10p041275 Quercus lobata HOM05D005286 ORTHO05D006348 4.7e-190 668.3 484 68.2
Duzib147G1331 Durio zibethinus HOM05D005286 ORTHO05D006348 5.2e-189 664.8 532 65.4
Duzib187G0999 Durio zibethinus HOM05D005286 ORTHO05D006348 5.7e-188 661.4 507 66.9
Ciclev10000962m.g Citrus clementina HOM05D005286 ORTHO05D006348 2.4e-186 656.0 512 67.0
FvH4_1g24860 Fragaria vesca HOM05D005286 ORTHO05D006348 1.0e-184 650.6 514 64.6
Cfa021278 Carpinus fangiana HOM05D005286 ORTHO05D006348 2.9e-184 649.0 511 65.6
FAN19G2916 Fragaria x ananassa HOM05D005286 ORTHO05D006348 2.9e-184 649.0 513 64.5
Eucgr.I00123 Eucalyptus grandis HOM05D005286 ORTHO05D006348 6.6e-184 647.9 548 63.1
Gohir.D12G083400 Gossypium hirsutum HOM05D005286 ORTHO05D006348 6.6e-184 647.9 510 65.5
MD15G1135000 Malus domestica HOM05D005286 ORTHO05D006348 8.6e-184 647.5 511 65.0
Gohir.A12G085400 Gossypium hirsutum HOM05D005286 ORTHO05D006348 1.9e-183 646.4 510 65.1
Atru.chr4.988 Acer truncatum HOM05D005286 ORTHO05D006348 2.5e-183 646.0 507 64.9
CSS0034769 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 4.3e-183 645.2 507 64.9
FAN23G2334 Fragaria x ananassa HOM05D005286 ORTHO05D006348 4.3e-183 645.2 514 63.8
RcHm_v2.0_Chr2g0122521 Rosa chinensis HOM05D005286 ORTHO05D006348 5.6e-183 644.8 490 65.3
FAN28G1250 Fragaria x ananassa HOM05D005286 ORTHO05D006348 9.5e-183 644.0 514 63.6
Lj1g0003788 Lotus japonicus HOM05D003519 ORTHO05D004443 9.5e-183 644.0 507 64.5
CSS0004303 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 1.2e-182 643.7 485 66.6
TWI75G1712 Tripterygium wilfordii HOM05D005286 ORTHO05D006348 1.2e-182 643.7 504 65.7
Prupe.4G274700 Prunus persica HOM05D005286 ORTHO05D006348 2.1e-182 642.9 505 64.8
FAN26G1990 Fragaria x ananassa HOM05D005286 ORTHO05D006348 3.6e-182 642.1 514 63.6
Rhsim08G0000400 Rhododendron simsii HOM05D005286 ORTHO05D006348 4.7e-182 641.7 477 66.7
Actinidia16523 Actinidia chinensis HOM05D005286 ORTHO05D006348 8.0e-182 641.0 504 65.9
Gorai.008G094500 Gossypium raimondii HOM05D005286 ORTHO05D006348 8.0e-182 641.0 524 64.1
Lj4A421T8 Lonicera japonica HOM05D005286 ORTHO05D006348 1.0e-181 640.6 486 66.7
MSTRG.23499 Avicennia marina HOM05D005286 ORTHO05D006348 4.0e-181 638.6 503 65.4
Lalb_Chr23g0272691 Lupinus albus HOM05D005286 ORTHO05D006348 4.0e-181 638.6 517 63.2
GSVIVG01022340001 Vitis vinifera HOM05D005286 ORTHO05D006348 1.2e-180 637.1 508 63.8
TAR625G0087 Trochodendron aralioides HOM05D005286 ORTHO05D006348 3.4e-180 635.6 512 63.9
vmacro18685 Vaccinium macrocarpon HOM05D005286 ORTHO05D006348 5.8e-180 634.8 509 64.8
Ca_16981_v3 Cicer arietinum L. HOM05D005286 ORTHO05D006348 1.7e-179 633.3 508 62.8
Manes.12G159000 Manihot esculenta HOM05D005286 ORTHO05D006348 1.7e-179 633.3 478 66.9
Glyma.06G155750 Glycine max HOM05D005286 ORTHO05D006348 1.1e-178 630.6 522 63.0
arahy.Tifrunner.gnm1.ann1.7K8RK5 Arachis hypogaea HOM05D005286 ORTHO05D006348 3.2e-178 629.0 525 61.3
arahy.Tifrunner.gnm1.ann1.ZN9YLD Arachis hypogaea HOM05D005286 ORTHO05D006348 7.0e-178 627.9 489 64.0
CANSAT35G0194 Cannabis sativa HOM05D005286 ORTHO05D006348 1.6e-177 626.7 504 63.9
Sabra07G0083800 Salix brachista HOM05D005286 ORTHO05D006348 1.6e-177 626.7 511 63.8
HanXRQChr01g0017141 Helianthus annuus HOM05D005286 ORTHO05D006348 2.0e-177 626.3 485 64.1
TPR.G33580 Trifolium pratense HOM05D005286 ORTHO05D006348 3.5e-177 625.5 490 64.1
SGA_v2.0_scaffold189G40378 Striga asiatica HOM05D005286 ORTHO05D006348 6.0e-177 624.8 496 65.9
Migut.H00797 Erythranthe guttata HOM05D005286 ORTHO05D006348 1.3e-176 623.6 487 65.3
Peaxi162Scf00151g00811 Petunia axillaris HOM05D005286 ORTHO05D006348 6.6e-176 621.3 532 59.8
Solyc12g088020.1 Solanum lycopersicum HOM05D005286 ORTHO05D006348 6.6e-176 621.3 503 60.8
Lsat_1_v5_gn_1_78000 Lactuca sativa HOM05D005286 ORTHO05D006348 1.9e-175 619.8 481 64.9
Aqoxy5G02419 Aquilegia oxysepala HOM05D005286 ORTHO05D006348 2.5e-175 619.4 503 63.2
VMungo1309G1016 Vigna mungo HOM05D005286 ORTHO05D006348 2.5e-175 619.4 503 63.4
ECA248G0233 Erigeron canadensis HOM05D005286 ORTHO05D006348 3.3e-175 619.0 511 62.4
Potri.007G101600 Populus trichocarpa HOM05D005286 ORTHO05D006348 3.3e-175 619.0 512 63.3
Oeu037874.1 Olea europaea HOM05D005286 ORTHO05D006348 4.3e-175 618.6 499 63.7
Hma1.2p1_3117F.1_g332810 Hydrangea macrophylla HOM05D005286 ORTHO05D006348 7.3e-175 617.8 529 60.7
Sopen12g030050 Solanum pennellii HOM05D005286 ORTHO05D006348 1.2e-174 617.1 503 60.2
Sc09g0002230 Simmondsia chinensis HOM05D005286 ORTHO05D006348 2.1e-174 616.3 506 61.3
ClCG04G002290 Citrullus lanatus HOM05D005286 ORTHO05D006348 3.6e-174 615.5 490 62.7
Medtr3g096675 Medicago truncatula HOM05D005286 ORTHO05D006348 4.7e-174 615.1 513 61.0
Sed0025698 Sechium edule HOM05D005286 ORTHO05D006348 5.2e-173 611.7 487 63.7
Nn1g08960 Nelumbo nucifera HOM05D005286 ORTHO05D006348 2.0e-172 609.8 484 63.8
Phvul.009G154600 Phaseolus vulgaris HOM05D005286 ORTHO05D006348 3.4e-172 609.0 503 62.2
Hund21799 Selenicereus undatus HOM05D005286 ORTHO05D006348 4.4e-172 608.6 497 61.0
Ah.06g191030 Amaranthus hybridus HOM05D005286 ORTHO05D006348 9.8e-172 607.4 481 61.7
MELO3C008897.2 Cucumis melo HOM05D005286 ORTHO05D006348 1.3e-171 607.1 501 61.7
THA.LOC104819345 Tarenaya hassleriana HOM05D005286 ORTHO05D006348 2.2e-171 606.3 505 62.4
CARHR277830 Cardamine hirsuta HOM05D005286 ORTHO05D006348 3.7e-171 605.5 511 59.9
CsaV3_4G030380 Cucumis sativus L. HOM05D005286 ORTHO05D006348 3.7e-171 605.5 483 62.5
PGSC0003DMG400045338 Solanum tuberosum HOM05D005286 ORTHO05D006348 6.4e-171 604.7 504 61.3
CAN.G1104.7 Capsicum annuum HOM05D005286 ORTHO05D006348 1.9e-170 603.2 503 60.8
AL8G41150 Arabidopsis lyrata HOM05D005286 ORTHO05D006348 2.4e-170 602.8 513 60.4
Potri.007G101700 Populus trichocarpa HOM05D005286 ORTHO05D006348 2.4e-170 602.8 511 61.6
Carub.0008s2471 Capsella rubella HOM05D005286 ORTHO05D006348 3.2e-170 602.4 511 59.9
BcaB02g09762 Brassica carinata HOM05D005286 ORTHO05D006348 6.0e-169 598.2 514 59.3
Cc07_g21020 Coffea canephora HOM05D005286 ORTHO05D006348 1.0e-168 597.4 504 60.3
Sp2g26980 Schrenkiella parvula HOM05D005286 ORTHO05D006348 2.3e-168 596.3 510 59.0
AT5G63910 Arabidopsis thaliana HOM05D005286 ORTHO05D006348 3.0e-168 595.9 510 59.8
EL10Ac4g09623 Beta vulgaris HOM05D005286 ORTHO05D006348 1.2e-166 590.5 533 56.8
C03p62500 Brassica napus HOM05D005286 ORTHO05D006348 1.6e-166 590.1 508 58.5
BolC3t18507H Brassica oleracea HOM05D005286 ORTHO05D006348 1.6e-166 590.1 508 58.5
Nitab4.5_0000954g0020 Nicotiana tabacum HOM05D005286 ORTHO05D006348 1.6e-166 590.1 491 61.1
A06p30530 Brassica napus HOM05D005286 ORTHO05D006348 2.1e-166 589.7 509 58.7
BraA06t26002Z Brassica rapa HOM05D005286 ORTHO05D006348 2.1e-166 589.7 509 58.7
Aa31LG1G17980 Aethionema arabicum HOM05D005286 ORTHO05D006348 3.6e-166 589.0 480 60.8
BcaC01g02644 Brassica carinata HOM05D005286 ORTHO05D006348 1.4e-165 587.0 481 60.3
PSO170G0528 Papaver somniferum HOM05D005286 ORTHO05D006348 5.8e-164 581.6 493 60.0
ATR0138G018 Amborella trichopoda HOM05D005286 ORTHO05D006348 7.6e-164 581.3 500 61.6
CSS0028284 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 3.7e-163 578.9 432 65.7
THA.LOC104818420 Tarenaya hassleriana HOM05D005286 ORTHO05D006348 2.4e-162 576.2 537 57.4
HPP92_011629 Vanilla planifolia HOM05D005286 ORTHO05D006348 4.9e-155 552.0 461 57.7
AUR62006858 Chenopodium quinoa HOM05D005286 ORTHO05D006348 8.4e-155 551.2 434 62.4
AUR62000514 Chenopodium quinoa HOM05D005286 ORTHO05D006348 1.1e-154 550.8 434 61.5
Thhalv10004131m.g Eutrema salsugineum HOM05D005286 ORTHO05D006348 3.9e-152 542.3 510 56.3
COL.COLO4_35813 Corchorus olitorius HOM05D005286 ORTHO05D006348 8.1e-150 534.6 507 58.2
MBI06_g35210_MAGBIO Magnolia biondii HOM05D005286 ORTHO05D006348 4.4e-148 528.9 568 52.6
CSS0025452 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 2.9e-147 526.2 503 55.1
Sabra07G0083900 Salix brachista HOM05D005286 ORTHO05D006348 6.4e-147 525.0 409 65.0
Zm00001eb434510 Zea mays HOM05D005286 ORTHO05D006348 5.4e-146 521.9 471 56.5
Gohir.D12G083401 Gossypium hirsutum HOM05D005286 ORTHO05D006348 1.9e-143 513.5 405 64.9
Nn5g28436 Nelumbo nucifera HOM05D005286 ORTHO05D006348 1.8e-141 506.9 500 55.0
Hund07236 Selenicereus undatus HOM05D005286 ORTHO05D006348 2.6e-140 503.1 424 60.4
Nitab4.5_0000432g0040 Nicotiana tabacum HOM05D005286 ORTHO05D006348 4.3e-135 485.7 492 53.9
DCAR_019994 Daucus carota HOM05D005286 ORTHO05D006348 1.0e-128 464.5 507 52.5
SMO119G0327 Selaginella moellendorffii HOM05D005286 ORTHO05D006348 2.0e-124 450.3 488 50.4
Mapoly0032s0088 Marchantia polymorpha HOM05D005286 ORTHO05D006348 7.6e-124 448.4 465 50.5
Psat5g059680 Pisum sativum HOM05D005286 ORTHO05D006348 1.0e-120 438.0 367 62.1
QL10p041264 Quercus lobata HOM05D005286 ORTHO05D006348 1.6e-105 387.5 267 69.7
Hma1.2p1_0310F.1_g121020 Hydrangea macrophylla HOM05D005286 ORTHO05D006348 3.5e-100 369.8 241 73.9
SEGI_22884 Sequoiadendron giganteum HOM05D005286 ORTHO05D006348 1.8e-88 330.9 266 62.0
SEGI_35897 Sequoiadendron giganteum HOM05D005286 ORTHO05D006348 1.8e-88 330.9 266 62.0
Cpa.g.sc37.7 Carica papaya HOM05D005286 ORTHO05D006348 2.3e-88 330.5 268 63.4
Haze_10873 Corylus avellana HOM05D005286 ORTHO05D006348 2.4e-85 320.5 290 58.6
Dinv24561 Davidia involucrata HOM05D005286 ORTHO05D006348 7.0e-85 318.9 200 74.5
Dinv15529 Davidia involucrata HOM05D005286 ORTHO05D006348 1.2e-84 318.2 201 74.1
CBR_g8546 Chara braunii HOM05D005286 ORTHO05D006348 1.6e-81 307.8 330 47.6
Pp3c3_10560 Physcomitrium patens HOM05D005286 ORTHO05D006348 4.4e-79 299.7 350 46.3
AagrBONN_evm.TU.Sc2ySwM_362.2029 Anthoceros agrestis HOM05D005286 ORTHO05D006348 3.7e-78 296.6 361 45.2
unitig_748.g8003 Utricularia gibba HOM05D005286 ORTHO05D006348 8.0e-73 278.9 280 57.1
DCAR_000205 Daucus carota HOM05D005286 ORTHO05D006348 1.5e-71 274.6 188 70.7
QL10p041267 Quercus lobata HOM05D005286 ORTHO05D006348 2.2e-70 270.8 253 56.9
unitig_748.g8002 Utricularia gibba HOM05D005286 ORTHO05D006348 4.9e-70 269.6 174 73.0
CSS0038762 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 6.4e-70 269.2 229 59.8
CDE08G1426 Ceratophyllum demersum HOM05D005286 ORTHO05D006348 7.0e-69 265.8 258 51.9
Dinv24565 Davidia involucrata HOM05D005286 ORTHO05D006348 2.3e-67 260.8 236 57.6
CSS0007937 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 7.3e-66 255.8 233 56.2
Oeu039334.1 Olea europaea HOM05D005286 ORTHO05D006348 1.8e-64 251.1 178 70.2
RcHm_v2.0_Chr6g0261231 Rosa chinensis HOM05D005286 ORTHO05D006348 1.2e-57 228.4 178 62.4
Cpa.g.sc37.6 Carica papaya HOM05D005286 ORTHO05D006348 1.5e-55 221.5 165 66.7
CDE08G1664 Ceratophyllum demersum HOM05D005286 ORTHO05D006348 9.2e-53 212.2 163 63.2
CBR_g864 Chara braunii HOM05D005286 ORTHO05D006348 1.9e-42 177.9 438 28.8
Nitab4.5_0004530g0050 Nicotiana tabacum HOM05D005286 ORTHO05D006348 6.6e-35 152.9 167 52.7
PRCOL_00003919 Prasinoderma coloniale HOM05D005286 ORTHO05D006348 1.3e-33 148.7 496 30.6
SEGI_37681 Sequoiadendron giganteum HOM05D005286 ORTHO05D006348 2.8e-33 147.5 149 53.0
CSS0025385 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 1.8e-32 144.8 189 43.4
Os04g0692800 Oryza sativa ssp. japonica HOM05D005286 ORTHO05D006348 5.6e-26 123.2 153 47.7
Nitab4.5_0008592g0010 Nicotiana tabacum HOM05D005286 ORTHO05D006348 6.2e-25 119.8 136 50.7
Glyma.04G210301 Glycine max HOM05D005286 ORTHO05D006348 4.6e-20 103.6 55 87.3
Nitab4.5_0008217g0010 Nicotiana tabacum HOM05D005286 ORTHO05D006348 4.6e-20 103.6 108 50.9
Hma1.2p1_0310F.1_g121040 Hydrangea macrophylla HOM05D005286 ORTHO05D006348 1.1e-16 92.4 63 68.3
CBR_g8549 Chara braunii HOM05D005286 ORTHO05D006348 6.5e-14 83.2 331 29.0
Oeu039336.1 Olea europaea HOM05D001574 ORTHO05D006348 1.8e-11 75.1 53 62.3
Cre10.g425200 Chlamydomonas reinhardtii HOM05D005286 ORTHO05D006348 8.2e-09 66.2 153 33.3
Nitab4.5_0002142g0070 Nicotiana tabacum HOM05D005286 ORTHO05D006348 1.5e-07 62.0 72 47.2
SalBow2G0549 Salvia bowleyana HOM05D002652 ORTHO05D002739 3.4e-07 60.8 69 53.6
Peaxi162Scf00151g00815 Petunia axillaris HOM05D005286 ORTHO05D006348 4.5e-07 60.5 85 43.5


User provided reference genes

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