Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR119G0322 Punica granatum HOM05D000764 ORTHO05D004953 0.0e+00 3863.9 1971 100.0
Eucgr.J01768 Eucalyptus grandis HOM05D000764 ORTHO05D004953 0.0e+00 2731.1 1996 72.1
Cfa009565 Carpinus fangiana HOM05D000764 ORTHO05D004953 0.0e+00 2711.8 2007 71.0
QL01p009034 Quercus lobata HOM05D000764 ORTHO05D004953 0.0e+00 2675.6 2022 69.6
CiPaw.13G176800 Carya illinoinensis HOM05D000764 ORTHO05D004953 0.0e+00 2651.3 2001 69.2
Manes.14G121800 Manihot esculenta HOM05D000764 ORTHO05D004953 0.0e+00 2619.0 2001 68.9
Atru.chr3.2095 Acer truncatum HOM05D000764 ORTHO05D004953 0.0e+00 2615.9 2052 67.8
Dinv33723 Davidia involucrata HOM05D000764 ORTHO05D004953 0.0e+00 2615.1 2037 68.4
CSS0037597 Camellia sinensis var. sinensis HOM05D000764 ORTHO05D004953 0.0e+00 2601.6 2002 68.1
Haze_22943 Corylus avellana HOM05D000764 ORTHO05D004953 0.0e+00 2583.9 2130 65.8
Ciclev10014014m.g Citrus clementina HOM05D000764 ORTHO05D004953 0.0e+00 2553.1 2000 67.5
Potri.001G004200 Populus trichocarpa HOM05D000764 ORTHO05D004953 0.0e+00 2552.3 1997 67.6
TWI32G0740 Tripterygium wilfordii HOM05D000764 ORTHO05D004953 0.0e+00 2529.6 2013 66.3
Potri.003G220800 Populus trichocarpa HOM05D000764 ORTHO05D004953 0.0e+00 2508.0 1994 65.9
RcHm_v2.0_Chr5g0083741 Rosa chinensis HOM05D000764 ORTHO05D004953 0.0e+00 2506.5 2008 66.9
Lj6g0018726 Lotus japonicus HOM05D000764 ORTHO05D004953 0.0e+00 2488.4 2004 66.4
Phvul.001G269300 Phaseolus vulgaris HOM05D000764 ORTHO05D004953 0.0e+00 2481.1 2000 65.3
TWI60G0851 Tripterygium wilfordii HOM05D000764 ORTHO05D004953 0.0e+00 2480.7 2019 65.0
arahy.Tifrunner.gnm1.ann1.ML2TY5 Arachis hypogaea HOM05D000764 ORTHO05D004953 0.0e+00 2478.4 1998 66.0
Duzib128G0342 Durio zibethinus HOM05D000764 ORTHO05D004953 0.0e+00 2474.5 2009 65.8
Glyma.18G000100 Glycine max HOM05D000764 ORTHO05D004953 0.0e+00 2473.7 2001 65.5
Prupe.6G003600 Prunus persica HOM05D000764 ORTHO05D004953 0.0e+00 2471.0 2005 66.0
arahy.Tifrunner.gnm1.ann1.W7TQKX Arachis hypogaea HOM05D000764 ORTHO05D004953 0.0e+00 2463.3 1998 65.7
FvH4_3g45550 Fragaria vesca HOM05D000764 ORTHO05D004953 0.0e+00 2454.9 2008 65.7
MD03G1004100 Malus domestica HOM05D000764 ORTHO05D004953 0.0e+00 2453.3 2008 65.6
CANSAT11G1226 Cannabis sativa HOM05D000764 ORTHO05D004953 0.0e+00 2450.6 2006 65.7
FAN11G0762 Fragaria x ananassa HOM05D000764 ORTHO05D004953 0.0e+00 2440.6 2024 65.1
CsaV3_1G041680 Cucumis sativus L. HOM05D000764 ORTHO05D004953 0.0e+00 2433.3 1999 64.9
Sabra01G0002900 Salix brachista HOM05D000764 ORTHO05D004953 0.0e+00 2431.4 2064 63.5
Gohir.A08G227900 Gossypium hirsutum HOM05D000764 ORTHO05D004953 0.0e+00 2423.3 1991 65.4
TPR.G19327 Trifolium pratense HOM05D000764 ORTHO05D004953 0.0e+00 2421.0 2008 64.6
Gorai.004G264800 Gossypium raimondii HOM05D000764 ORTHO05D004953 0.0e+00 2418.3 1994 65.1
Gohir.D08G248200 Gossypium hirsutum HOM05D000764 ORTHO05D004953 0.0e+00 2416.3 2001 64.8
Sed0024847 Sechium edule HOM05D000764 ORTHO05D004953 0.0e+00 2410.6 1997 64.0
Lalb_Chr23g0278471 Lupinus albus HOM05D000764 ORTHO05D004953 0.0e+00 2410.2 2005 64.7
Glyma.11G256800 Glycine max HOM05D000764 ORTHO05D004953 0.0e+00 2400.2 2002 64.2
Ca_16376_v3 Cicer arietinum L. HOM05D000764 ORTHO05D004953 0.0e+00 2394.0 1999 64.6
ClCG03G014510 Citrullus lanatus HOM05D000764 ORTHO05D004953 0.0e+00 2388.6 2108 61.3
FAN21G0270 Fragaria x ananassa HOM05D000764 ORTHO05D004953 0.0e+00 2385.9 2055 63.5
Sabra03G0164300 Salix brachista HOM05D000764 ORTHO05D004953 0.0e+00 2371.3 1987 64.7
FAN25G3812 Fragaria x ananassa HOM05D000764 ORTHO05D004953 0.0e+00 2369.3 2015 63.9
Medtr3g083500 Medicago truncatula HOM05D000764 ORTHO05D004953 0.0e+00 2357.8 2009 63.3
GSVIVG01025465001 Vitis vinifera HOM05D000764 ORTHO05D004953 0.0e+00 2347.0 1848 67.2
Cc01_g00030 Coffea canephora HOM05D000764 ORTHO05D004953 0.0e+00 2317.0 2019 62.2
Psat5g101160 Pisum sativum HOM05D000764 ORTHO05D004953 0.0e+00 2292.7 2002 62.4
MELO3C015581.2 Cucumis melo HOM05D000764 ORTHO05D004953 0.0e+00 2292.3 2111 60.0
Rhsim03G0149100 Rhododendron simsii HOM05D000764 ORTHO05D004953 0.0e+00 2263.0 2038 61.5
FAN16G0168 Fragaria x ananassa HOM05D000764 ORTHO05D004953 0.0e+00 2255.3 2025 61.6
CAN.G1237.43 Capsicum annuum HOM05D000764 ORTHO05D004953 0.0e+00 2247.6 2019 61.1
Sopen04g010120 Solanum pennellii HOM05D000764 ORTHO05D004953 0.0e+00 2233.0 2013 61.0
Nn7g35865 Nelumbo nucifera HOM05D000764 ORTHO05D004953 0.0e+00 2228.0 2018 59.8
EL10Ac4g10385 Beta vulgaris HOM05D000764 ORTHO05D004953 0.0e+00 2221.8 1995 60.4
MSTRG.16793 Avicennia marina HOM05D000764 ORTHO05D004953 0.0e+00 2219.9 2005 61.5
DCAR_029576 Daucus carota HOM05D000764 ORTHO05D004953 0.0e+00 2214.5 2012 59.4
Oeu021897.1 Olea europaea HOM05D000764 ORTHO05D004953 0.0e+00 2214.1 2068 59.6
Aqoxy3G01104 Aquilegia oxysepala HOM05D000764 ORTHO05D004953 0.0e+00 2206.8 2000 60.0
Solyc04g039950.4 Solanum lycopersicum HOM05D000764 ORTHO05D004953 0.0e+00 2206.8 2013 60.4
Hund07595 Selenicereus undatus HOM05D000764 ORTHO05D004953 0.0e+00 2206.4 2058 58.8
THA.LOC104810327 Tarenaya hassleriana HOM05D000764 ORTHO05D004953 0.0e+00 2206.4 1988 60.2
MBI11_g24613_MAGBIO Magnolia biondii HOM05D000764 ORTHO05D004953 0.0e+00 2192.9 1990 59.1
Dinv06519 Davidia involucrata HOM05D000764 ORTHO05D004953 0.0e+00 2176.7 1678 68.2
Migut.L00381 Erythranthe guttata HOM05D000764 ORTHO05D004953 0.0e+00 2174.4 1998 60.4
Sp1g41000 Schrenkiella parvula HOM05D000764 ORTHO05D004953 0.0e+00 2170.6 1992 59.5
AT1G55325 Arabidopsis thaliana HOM05D000764 ORTHO05D004953 0.0e+00 2164.0 1990 59.5
CARHR044980 Cardamine hirsuta HOM05D000764 ORTHO05D004953 0.0e+00 2159.8 1993 59.5
ECA233G5672 Erigeron canadensis HOM05D000764 ORTHO05D004953 0.0e+00 2159.8 2003 60.2
HanXRQChr13g0405791 Helianthus annuus HOM05D000764 ORTHO05D004953 0.0e+00 2158.3 2010 60.5
Carub.0001s4383 Capsella rubella HOM05D000764 ORTHO05D004953 0.0e+00 2153.3 1993 59.1
Thhalv10011178m.g Eutrema salsugineum HOM05D000764 ORTHO05D004953 0.0e+00 2153.3 1997 59.3
AL1G63370 Arabidopsis lyrata HOM05D000764 ORTHO05D004953 0.0e+00 2136.3 1991 58.8
BraA06t23242Z Brassica rapa HOM05D000764 ORTHO05D004953 0.0e+00 2107.8 2012 58.0
A06p00260 Brassica napus HOM05D000764 ORTHO05D004953 0.0e+00 2104.7 1980 58.6
Aa31LG10G1120 Aethionema arabicum HOM05D000764 ORTHO05D004953 0.0e+00 2099.3 2002 58.0
AUR62040904 Chenopodium quinoa HOM05D000764 ORTHO05D004953 0.0e+00 2097.0 1980 57.5
C06p10270 Brassica napus HOM05D000764 ORTHO05D004953 0.0e+00 2095.5 1979 58.3
PSO339G2492 Papaver somniferum HOM05D000764 ORTHO05D004953 0.0e+00 2095.5 2014 58.1
A05p17530 Brassica napus HOM05D000764 ORTHO05D004953 0.0e+00 2089.7 1992 58.1
BraA05t20647Z Brassica rapa HOM05D000764 ORTHO05D004953 0.0e+00 2087.4 2009 57.7
BolC6t36790H Brassica oleracea HOM05D000764 ORTHO05D004953 0.0e+00 2082.0 2025 57.3
BolC6t36102H Brassica oleracea HOM05D000764 ORTHO05D004953 0.0e+00 2078.1 2010 57.5
C06p15980 Brassica napus HOM05D000764 ORTHO05D004953 0.0e+00 2067.7 1995 57.4
THA.LOC104822680 Tarenaya hassleriana HOM05D000764 ORTHO05D004953 0.0e+00 2066.6 1985 57.2
Lsat_1_v5_gn_6_53100 Lactuca sativa HOM05D000764 ORTHO05D004953 0.0e+00 2030.0 2027 57.6
vmacro06919 Vaccinium macrocarpon HOM05D000764 ORTHO05D004953 0.0e+00 2029.2 1905 59.8
SGA_v2.0_scaffold58G20565 Striga asiatica HOM05D000764 ORTHO05D004953 0.0e+00 1981.5 2160 54.0
Peaxi162Scf00970g00016 Petunia axillaris HOM05D000764 ORTHO05D004953 0.0e+00 1951.8 1898 57.4
BcaC08g44192 Brassica carinata HOM05D000764 ORTHO05D004953 0.0e+00 1931.4 1986 55.6
Nitab4.5_0000799g0100 Nicotiana tabacum HOM05D000764 ORTHO05D004953 0.0e+00 1914.8 1779 58.5
Sc21g0002730 Simmondsia chinensis HOM05D000764 ORTHO05D004953 0.0e+00 1845.9 1680 60.0
ATR0490G003 Amborella trichopoda HOM05D000764 ORTHO05D004953 0.0e+00 1843.9 2044 51.4
Nitab4.5_0003134g0150 Nicotiana tabacum HOM05D000764 ORTHO05D004953 0.0e+00 1811.2 1755 56.9
Thecc.05G133300 Theobroma cacao HOM05D000764 ORTHO05D004953 0.0e+00 1744.6 1427 65.7
Lj2A763G35 Lonicera japonica HOM05D000764 ORTHO05D004953 0.0e+00 1615.5 1713 55.5
SalBow6G5302 Salvia bowleyana HOM05D000764 ORTHO05D004953 0.0e+00 1612.4 1494 59.4
Hma1.2p1_0449F.1_g155090 Hydrangea macrophylla HOM05D000764 ORTHO05D004953 0.0e+00 1610.9 1378 63.0
Zm00001eb379470 Zea mays HOM05D000764 ORTHO05D004953 0.0e+00 1605.1 2017 48.2
VMungo1080G1230 Vigna mungo HOM05D000764 ORTHO05D004953 0.0e+00 1510.0 1241 63.7
SEGI_09587 Sequoiadendron giganteum HOM05D000764 ORTHO05D004953 0.0e+00 1368.2 1901 44.3
Nitab4.5_0005544g0060 Nicotiana tabacum HOM05D000764 ORTHO05D004953 0.0e+00 1360.9 2042 43.5
TAR623G0710 Trochodendron aralioides HOM05D000764 ORTHO05D004953 0.0e+00 1341.6 1198 62.6
SEGI_04814 Sequoiadendron giganteum HOM05D000764 ORTHO05D004953 0.0e+00 1258.4 1566 46.6
SalBow6G3750 Salvia bowleyana HOM05D000764 ORTHO05D004953 0.0e+00 1224.5 1194 58.0
CDE10G0573 Ceratophyllum demersum HOM05D000764 ORTHO05D004953 0.0e+00 1202.6 1435 48.6
Cpa.g.sc119.44 Carica papaya HOM05D000764 ORTHO05D004953 0.0e+00 1099.3 776 73.7
COL.COLO4_07280 Corchorus olitorius HOM05D000764 ORTHO05D004953 3.1e-306 1056.2 778 71.2
TAR623G0474 Trochodendron aralioides HOM05D000764 ORTHO05D004953 3.2e-295 1019.6 777 68.6
CDE10G0575 Ceratophyllum demersum HOM05D000764 ORTHO05D004953 6.7e-269 932.2 999 52.4
Aqoxy368s001 Aquilegia oxysepala HOM05D000764 ORTHO05D004953 1.1e-268 931.4 1055 50.8
AUR62019164 Chenopodium quinoa HOM05D000764 ORTHO05D004953 9.7e-268 928.3 838 60.1
Mapoly0029s0052 Marchantia polymorpha HOM05D000764 ORTHO05D004953 4.8e-267 926.0 2152 34.2
AUR62019165 Chenopodium quinoa HOM05D000764 ORTHO05D004953 5.7e-252 875.9 1185 44.6
Pp3c11_22280 Physcomitrium patens HOM05D000764 ORTHO05D004953 9.1e-250 868.6 2155 32.8
vmacro06915 Vaccinium macrocarpon HOM05D000764 ORTHO05D004953 1.6e-238 831.2 1297 41.9
SHI31301 Sapria himalayana HOM05D000764 ORTHO05D004953 1.1e-202 712.2 1030 44.2
AagrBONN_evm.TU.Sc2ySwM_117.2245 Anthoceros agrestis HOM05D000764 ORTHO05D004953 1.2e-196 692.2 1990 30.9
SMO365G0018 Selaginella moellendorffii HOM05D000764 ORTHO05D004953 6.6e-176 623.2 1934 29.4
Migut.L00380 Erythranthe guttata HOM05D000764 ORTHO05D004953 1.1e-167 595.9 658 54.3
Migut.L00371 Erythranthe guttata HOM05D000764 ORTHO05D004953 1.1e-165 589.3 425 68.2
Pp3c7_4610 Physcomitrium patens HOM05D000764 ORTHO05D004953 1.2e-164 585.9 1612 31.8
SalBow6G2556 Salvia bowleyana HOM05D000764 ORTHO05D004953 6.5e-163 580.1 534 58.4
Os05g0447500 Oryza sativa ssp. japonica HOM05D000764 ORTHO05D004953 5.8e-156 557.0 591 51.6
Actinidia02700 Actinidia chinensis HOM05D000764 ORTHO05D004953 1.5e-140 505.8 321 76.6
Lj2A763G34 Lonicera japonica HOM05D000764 ORTHO05D004953 2.5e-130 471.9 496 54.6
SHI31298 Sapria himalayana HOM05D000764 ORTHO05D004953 1.3e-115 422.9 527 48.0
CDE10G0477 Ceratophyllum demersum HOM05D000764 ORTHO05D004953 3.6e-113 414.8 774 38.6
VMungo1080G0389 Vigna mungo HOM05D000764 ORTHO05D004953 7.0e-109 400.6 384 60.7
Actinidia02701 Actinidia chinensis HOM05D000764 ORTHO05D004953 5.5e-106 391.0 317 66.9
SEGI_19391 Sequoiadendron giganteum HOM05D000764 ORTHO05D004953 2.5e-98 365.5 387 51.2
Os05g0447580 Oryza sativa ssp. japonica HOM05D000764 ORTHO05D004953 1.9e-93 349.4 360 52.5
Actinidia15647 Actinidia chinensis HOM05D000764 ORTHO05D004953 1.2e-92 346.7 219 78.5
Aqoxy6G02541 Aquilegia oxysepala HOM05D000764 ORTHO05D004953 3.1e-88 332.0 281 63.0
Hma1.2p1_0449F.1_g155100 Hydrangea macrophylla HOM05D000764 ORTHO05D004953 1.6e-81 309.7 210 71.9
CiPaw.14G136600 Carya illinoinensis HOM05D000764 ORTHO05D004953 4.0e-80 305.1 248 66.1
VMungo1080G1023 Vigna mungo HOM05D000764 ORTHO05D004953 4.7e-73 281.6 194 74.7
CAN.G610.44 Capsicum annuum HOM05D000764 ORTHO05D004953 3.5e-68 265.4 280 52.5
Dinv39954 Davidia involucrata HOM05D000764 ORTHO05D004953 3.5e-68 265.4 294 52.4
CBR_g38308 Chara braunii HOM05D000019 ORTHO05D000048 7.8e-68 264.2 1117 26.4
VMungo1080G1824 Vigna mungo HOM05D000764 ORTHO05D004953 1.0e-67 263.8 165 74.5
COL.COLO4_07282 Corchorus olitorius HOM05D000764 ORTHO05D004953 2.4e-64 252.7 162 73.5
Cpa.g.sc119.45 Carica papaya HOM05D000764 ORTHO05D004953 9.9e-63 247.3 220 62.7
vmacro06920 Vaccinium macrocarpon HOM05D000764 ORTHO05D004953 5.4e-61 241.5 160 72.5
CAN.G1237.45 Capsicum annuum HOM05D000764 ORTHO05D004953 2.8e-57 229.2 409 41.1
CAN.G1237.21 Capsicum annuum HOM05D000764 ORTHO05D004953 3.1e-56 225.7 258 50.4
Psat6g137480 Pisum sativum HOM05D000493 ORTHO05D004953 1.6e-52 213.4 328 42.1
SEGI_38078 Sequoiadendron giganteum HOM05D000764 ORTHO05D004953 3.9e-51 208.8 164 62.8
CAN.G1237.46 Capsicum annuum HOM05D000764 ORTHO05D004953 1.3e-49 203.8 256 49.6
VMungo1383G3575 Vigna mungo HOM05D000764 ORTHO05D004953 3.7e-49 202.2 385 40.5
CDE10G1322 Ceratophyllum demersum HOM05D000764 ORTHO05D004953 2.9e-46 192.6 125 69.6
HPP92_009741 Vanilla planifolia HOM05D000764 ORTHO05D004953 1.6e-41 176.8 623 28.3
CDE10G0100 Ceratophyllum demersum HOM05D000764 ORTHO05D004953 4.1e-40 172.2 317 36.9
Dinv39953 Davidia involucrata HOM05D000100 ORTHO05D000052 4.5e-39 168.7 141 69.5
Rhsim12G0118500 Rhododendron simsii HOM05D000764 ORTHO05D004953 6.7e-35 154.8 454 33.7
Nn1g03529 Nelumbo nucifera HOM05D000764 ORTHO05D004953 1.3e-30 140.6 72 79.2
CAN.G1237.22 Capsicum annuum HOM05D000764 ORTHO05D004953 8.5e-30 137.9 90 73.3
CAN.G1248.23 Capsicum annuum HOM05D000764 ORTHO05D009197 1.7e-22 113.6 141 48.2
Oeu017835.1 Olea europaea HOM05D000764 ORTHO05D004953 5.5e-21 108.6 109 56.0
Psat5g238800 Pisum sativum HOM05D000764 ORTHO05D002785 1.2e-20 107.5 107 61.7
Psat5g238960 Pisum sativum HOM05D000764 ORTHO05D002785 1.2e-20 107.5 107 61.7
SHI31300 Sapria himalayana HOM05D000764 ORTHO05D004953 3.3e-18 99.4 68 67.6
Psat7g241120 Pisum sativum HOM05D002716 ORTHO05D003324 1.3e-17 97.4 122 54.9
Psat2g093280 Pisum sativum HOM05D002199 ORTHO05D007829 3.7e-17 95.9 148 49.3
SHI31294 Sapria himalayana HOM05D000764 ORTHO05D004953 8.2e-17 94.7 115 47.0
SHI31299 Sapria himalayana HOM05D000764 ORTHO05D004953 3.1e-16 92.8 149 44.3
CiPaw.14G136500 Carya illinoinensis HOM05D000764 ORTHO05D004953 5.9e-15 88.6 66 69.7
BcaC03g15090 Brassica carinata HOM05D000951 ORTHO05D032059 2.2e-14 86.7 63 68.3
BolC2t08722H Brassica oleracea HOM05D000951 ORTHO05D032059 2.2e-14 86.7 63 68.3
Sc16g0012210 Simmondsia chinensis HOM05D000764 ORTHO05D004953 3.8e-14 85.9 166 38.0
Thhalv10012088m.g Eutrema salsugineum HOM05D000764 ORTHO05D004953 9.4e-13 81.3 166 36.1
SHI31296 Sapria himalayana HOM05D000764 ORTHO05D004953 3.6e-12 79.3 109 41.3
C07p61900 Brassica napus HOM05D000764 ORTHO05D004953 1.6e-07 63.9 52 67.3
CAN.G1237.23 Capsicum annuum HOM05D000764 ORTHO05D010647 2.0e-07 63.5 47 63.8
C02p26490 Brassica napus HOM05D000951 ORTHO05D032059 3.8e-06 59.3 85 41.2


User provided reference genes

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