Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR119G0286 Punica granatum HOM05D005467 ORTHO05D006523 3.3e-242 841.3 420 100.0
Eucgr.G02222 Eucalyptus grandis HOM05D005467 ORTHO05D006523 2.2e-193 679.1 410 80.5
Thecc.02G211500 Theobroma cacao HOM05D005467 ORTHO05D006523 9.1e-192 673.7 411 78.6
Ciclev10015390m.g Citrus clementina HOM05D005467 ORTHO05D006523 2.7e-191 672.2 416 78.6
Cfa008565 Carpinus fangiana HOM05D005467 ORTHO05D006523 7.7e-191 670.6 420 78.1
Potri.010G116200 Populus trichocarpa HOM05D005467 ORTHO05D006523 5.0e-190 667.9 415 77.8
CiPaw.05G246600 Carya illinoinensis HOM05D005467 ORTHO05D006523 8.5e-190 667.2 420 78.6
RcHm_v2.0_Chr4g0433781 Rosa chinensis HOM05D005467 ORTHO05D006523 1.1e-189 666.8 411 78.8
Actinidia14942 Actinidia chinensis HOM05D005467 ORTHO05D006523 1.6e-188 662.9 413 78.0
CSS0047900 Camellia sinensis var. sinensis HOM05D005467 ORTHO05D006523 2.8e-188 662.1 415 77.1
TAR629G1677 Trochodendron aralioides HOM05D005467 ORTHO05D006523 2.3e-187 659.1 414 77.1
Hma1.2p1_0114F.1_g055340 Hydrangea macrophylla HOM05D005467 ORTHO05D006523 3.0e-187 658.7 424 76.2
FvH4_4g26200 Fragaria vesca HOM05D005467 ORTHO05D006523 2.0e-186 656.0 420 76.0
GSVIVG01011792001 Vitis vinifera HOM05D005467 ORTHO05D006523 2.0e-186 656.0 411 77.9
MD16G1031500 Malus domestica HOM05D005467 ORTHO05D006523 7.5e-186 654.1 420 76.0
Gorai.012G123600 Gossypium raimondii HOM05D005467 ORTHO05D006523 9.8e-186 653.7 415 76.6
FAN07G0694 Fragaria x ananassa HOM05D005467 ORTHO05D006523 3.7e-185 651.7 420 76.2
TWI31G0476 Tripterygium wilfordii HOM05D005467 ORTHO05D006523 3.7e-185 651.7 417 75.8
Glyma.10G266400 Glycine max HOM05D005467 ORTHO05D006523 5.4e-184 647.9 420 74.8
Gohir.A04G099200 Gossypium hirsutum HOM05D005467 ORTHO05D006523 5.4e-184 647.9 415 76.1
Nn3g18021 Nelumbo nucifera HOM05D005467 ORTHO05D006523 7.0e-184 647.5 421 75.5
Phvul.007G035400 Phaseolus vulgaris HOM05D005467 ORTHO05D006523 1.2e-183 646.7 420 75.0
Lj5g0001822 Lotus japonicus HOM05D005467 ORTHO05D006523 1.3e-182 643.3 417 74.1
Sabra10G0087600 Salix brachista HOM05D005467 ORTHO05D006523 2.9e-182 642.1 452 71.7
Sabra10G0086000 Salix brachista HOM05D005467 ORTHO05D006523 2.5e-181 639.0 456 70.8
VMungo0720G1946 Vigna mungo HOM05D005467 ORTHO05D006523 2.5e-181 639.0 420 73.6
Glyma.20G124100 Glycine max HOM05D005467 ORTHO05D006523 3.3e-181 638.6 414 75.6
CANSAT01G3134 Cannabis sativa HOM05D005467 ORTHO05D006523 4.3e-181 638.3 419 75.4
Migut.L00653 Erythranthe guttata HOM05D005467 ORTHO05D006523 1.2e-180 636.7 417 73.1
CsaV3_5G034840 Cucumis sativus L. HOM05D005467 ORTHO05D006523 2.1e-180 636.0 407 75.2
Migut.L00826 Erythranthe guttata HOM05D005467 ORTHO05D006523 2.8e-180 635.6 417 73.1
QL01p002615 Quercus lobata HOM05D005467 ORTHO05D006523 3.6e-180 635.2 496 65.1
Manes.06G062500 Manihot esculenta HOM05D005467 ORTHO05D006523 6.1e-180 634.4 415 74.7
Sed0008724 Sechium edule HOM05D005467 ORTHO05D006523 8.0e-180 634.0 411 74.7
HanXRQChr15g0477671 Helianthus annuus HOM05D005467 ORTHO05D006523 4.0e-179 631.7 415 72.8
arahy.Tifrunner.gnm1.ann1.U1J3BU Arachis hypogaea HOM05D005467 ORTHO05D006523 5.2e-179 631.3 409 74.8
ECA246G2902 Erigeron canadensis HOM05D005467 ORTHO05D006523 2.9e-177 625.5 410 73.4
Lalb_Chr21g0308561 Lupinus albus HOM05D005467 ORTHO05D006523 4.9e-177 624.8 413 73.1
PSO063G5439 Papaver somniferum HOM05D005467 ORTHO05D006523 1.4e-176 623.2 409 73.8
PSO782G0553 Papaver somniferum HOM05D005467 ORTHO05D006523 5.4e-176 621.3 413 73.6
arahy.Tifrunner.gnm1.ann1.F0PHAM Arachis hypogaea HOM05D005467 ORTHO05D006523 7.0e-176 620.9 432 71.3
Rhsim09G0101300 Rhododendron simsii HOM05D005467 ORTHO05D006523 1.2e-175 620.2 466 67.6
Lj6C750G3 Lonicera japonica HOM05D005467 ORTHO05D006523 1.6e-175 619.8 419 73.5
TPR.G4835 Trifolium pratense HOM05D005467 ORTHO05D006523 2.0e-175 619.4 419 70.4
Medtr1g108650 Medicago truncatula HOM05D005467 ORTHO05D006523 5.9e-175 617.8 419 70.4
Aqoxy3G00153 Aquilegia oxysepala HOM05D005467 ORTHO05D006523 1.5e-173 613.2 415 73.0
Psat6g222960 Pisum sativum HOM05D005467 ORTHO05D006523 5.6e-173 611.3 419 69.9
Prupe.1G321400 Prunus persica HOM05D005467 ORTHO05D006523 7.3e-173 610.9 364 80.8
ClCG05G022280 Citrullus lanatus HOM05D005467 ORTHO05D006523 1.2e-172 610.1 486 65.0
FAN12G3855 Fragaria x ananassa HOM05D005467 ORTHO05D006523 1.0e-171 607.1 420 72.4
Atru.chr11.358 Acer truncatum HOM05D005467 ORTHO05D006523 1.4e-171 606.7 381 78.2
FAN12G1869 Fragaria x ananassa HOM05D005467 ORTHO05D006523 5.2e-171 604.7 420 72.1
MBI10_g46301_MAGBIO Magnolia biondii HOM05D005467 ORTHO05D006523 5.2e-171 604.7 362 80.4
Peaxi162Scf00205g00928 Petunia axillaris HOM05D005467 ORTHO05D006523 9.8e-170 600.5 414 69.8
DCAR_007277 Daucus carota HOM05D005467 ORTHO05D006523 5.4e-168 594.7 418 68.4
Nitab4.5_0000350g0200 Nicotiana tabacum HOM05D005467 ORTHO05D006523 2.7e-167 592.4 398 71.4
Ca_11108_v3 Cicer arietinum L. HOM05D005467 ORTHO05D006523 6.0e-167 591.3 415 69.4
Sopen05g004250 Solanum pennellii HOM05D005467 ORTHO05D006523 1.3e-166 590.1 416 69.7
CAN.G1489.4 Capsicum annuum HOM05D005467 ORTHO05D006523 3.3e-165 585.5 411 69.6
AUR62014129 Chenopodium quinoa HOM05D005467 ORTHO05D006523 2.8e-164 582.4 435 65.7
Duzib248G1088 Durio zibethinus HOM05D005467 ORTHO05D006523 4.0e-163 578.6 421 69.8
Ah.02g128100 Amaranthus hybridus HOM05D005467 ORTHO05D006523 5.2e-163 578.2 431 65.2
Os01g0506200 Oryza sativa ssp. japonica HOM05D005467 ORTHO05D006523 6.4e-161 571.2 409 67.2
Solyc05g008420.4 Solanum lycopersicum HOM05D005467 ORTHO05D006523 9.2e-160 567.4 401 69.6
Cpa.g.sc65.104 Carica papaya HOM05D005467 ORTHO05D006523 2.1e-156 556.2 411 68.4
Hund24998 Selenicereus undatus HOM05D005467 ORTHO05D006523 4.0e-155 552.0 410 67.1
MELO3C012295.2 Cucumis melo HOM05D005467 ORTHO05D006523 2.9e-153 545.8 353 75.4
SGA_v2.0_scaffold50G18532 Striga asiatica HOM05D005467 ORTHO05D006523 3.2e-152 542.3 450 61.3
MSTRG.879 Avicennia marina HOM05D005467 ORTHO05D006523 9.2e-152 540.8 356 73.3
Dinv05879 Davidia involucrata HOM05D005467 ORTHO05D006523 3.5e-151 538.9 328 80.8
TAR622G1271 Trochodendron aralioides HOM05D005467 ORTHO05D006523 2.3e-150 536.2 345 76.2
Gohir.D04G138632 Gossypium hirsutum HOM05D005467 ORTHO05D006523 5.6e-149 531.6 350 74.3
vmacro10622 Vaccinium macrocarpon HOM05D005467 ORTHO05D006523 1.5e-141 506.9 475 57.7
AUR62039552 Chenopodium quinoa HOM05D005467 ORTHO05D006523 2.8e-140 502.7 427 59.5
unitig_21.g20024 Utricularia gibba HOM05D000903 ORTHO05D000731 1.2e-127 460.7 400 57.8
Nitab4.5_0004524g0030 Nicotiana tabacum HOM05D005467 ORTHO05D006523 1.3e-121 440.7 300 72.0
ATR0041G011 Amborella trichopoda HOM05D005467 ORTHO05D006523 1.7e-121 440.3 431 50.8
SMO172G0164 Selaginella moellendorffii HOM05D005467 ORTHO05D006523 4.9e-121 438.7 404 54.7
Sc04g0005780 Simmondsia chinensis HOM05D005467 ORTHO05D006523 7.1e-120 434.9 267 79.4
Gohir.D04G138566 Gossypium hirsutum HOM05D005467 ORTHO05D006523 6.0e-119 431.8 279 75.3
Cc11_g09130 Coffea canephora HOM05D005467 ORTHO05D006523 2.3e-118 429.9 270 77.0
Nitab4.5_0000293g0010 Nicotiana tabacum HOM05D005467 ORTHO05D006523 1.9e-117 426.8 421 50.8
Lsat_1_v5_gn_3_54101 Lactuca sativa HOM05D005467 ORTHO05D006523 6.5e-113 411.8 276 72.1
Nitab4.5_0000350g0270 Nicotiana tabacum HOM05D005467 ORTHO05D006523 3.3e-109 399.4 427 49.2
AagrBONN_evm.TU.Sc2ySwM_344.4352 Anthoceros agrestis HOM05D005467 ORTHO05D006523 7.4e-109 398.3 415 50.4
Pp3c22_2590 Physcomitrium patens HOM05D005467 ORTHO05D006523 2.0e-101 373.6 410 48.0
HPP92_008650 Vanilla planifolia HOM05D005467 ORTHO05D006523 9.7e-101 371.3 276 65.6
Peaxi162Scf00159g00824 Petunia axillaris HOM05D005467 ORTHO05D006523 2.7e-95 353.2 549 39.0
Oeu064202.3 Olea europaea HOM05D005467 ORTHO05D006523 8.8e-94 348.2 264 66.3
Sopen02g012020 Solanum pennellii HOM05D005467 ORTHO05D006523 7.4e-93 345.1 426 42.3
CDE06G2222 Ceratophyllum demersum HOM05D005467 ORTHO05D006523 1.7e-92 344.0 230 75.2
Zm00001eb341680 Zea mays HOM05D005467 ORTHO05D006523 4.8e-92 342.4 315 56.2
Sopen02g012000 Solanum pennellii HOM05D005467 ORTHO05D006523 3.8e-89 332.8 420 41.4
SEGI_12457 Sequoiadendron giganteum HOM05D005467 ORTHO05D006523 2.0e-85 320.5 252 61.9
CBR_g17592 Chara braunii HOM05D005467 ORTHO05D006523 2.6e-85 320.1 409 42.8
PGSC0003DMG400029189 Solanum tuberosum HOM05D005467 ORTHO05D006523 3.7e-84 316.2 426 38.7
PGSC0003DMG400017873 Solanum tuberosum HOM05D005467 ORTHO05D006523 2.4e-83 313.5 417 38.6
Dinv04888 Davidia involucrata HOM05D005467 ORTHO05D006523 4.1e-83 312.8 194 79.4
Peaxi162Scf00159g00823 Petunia axillaris HOM05D005467 ORTHO05D006523 7.0e-83 312.0 446 38.6
Sopen02g012010 Solanum pennellii HOM05D005467 ORTHO05D006523 2.2e-81 307.0 429 38.7
Solyc02g038680.1 Solanum lycopersicum HOM05D005467 ORTHO05D006523 2.3e-78 297.0 419 39.9
FAN17G2566 Fragaria x ananassa HOM05D005467 ORTHO05D006523 1.9e-72 277.3 190 71.6
Solyc02g038650.1 Solanum lycopersicum HOM05D005467 ORTHO05D006523 4.1e-67 259.6 353 40.5
Solyc02g038670.3 Solanum lycopersicum HOM05D005467 ORTHO05D006523 1.7e-65 254.2 429 34.3
MCO12G173 Micromonas commoda HOM05D005467 ORTHO05D006523 4.9e-60 236.1 365 39.7
Haze_11050 Corylus avellana HOM05D005467 ORTHO05D006523 1.6e-58 231.1 205 61.5
Haze_11049 Corylus avellana HOM05D005467 ORTHO05D006523 2.7e-58 230.3 167 70.7
Cc11_g09120 Coffea canephora HOM05D005467 ORTHO05D006523 7.8e-58 228.8 142 75.4
Peaxi162Scf00205g00812 Petunia axillaris HOM05D005467 ORTHO05D006523 3.9e-57 226.5 405 35.8
PRCOL_00002109 Prasinoderma coloniale HOM05D005467 ORTHO05D006523 6.2e-55 219.2 399 35.6
Lsat_1_v5_gn_3_86380 Lactuca sativa HOM05D005467 ORTHO05D006523 1.4e-51 208.0 267 46.8
Sopen02g012080 Solanum pennellii HOM05D005467 ORTHO05D006523 1.9e-48 197.6 396 32.6
PGSC0003DMG400029188 Solanum tuberosum HOM05D005467 ORTHO05D006523 5.8e-45 186.0 328 33.8
RcHm_v2.0_Chr7g0235151 Rosa chinensis HOM05D005467 ORTHO05D006523 8.3e-44 182.2 104 85.6
Sed0021963 Sechium edule HOM05D005467 ORTHO05D006523 4.1e-43 179.9 263 42.6
Solyc02g038660.3 Solanum lycopersicum HOM05D005467 ORTHO05D006523 1.1e-40 171.8 327 33.6
Lsat_1_v5_gn_3_107041 Lactuca sativa HOM05D005467 ORTHO05D006523 3.3e-40 170.2 216 48.1
Nitab4.5_0004524g0050 Nicotiana tabacum HOM05D005467 ORTHO05D006523 8.1e-39 165.6 118 62.7
FAN17G1461 Fragaria x ananassa HOM05D005467 ORTHO05D006523 1.5e-37 161.4 112 70.5
Lsat_1_v5_gn_4_96160 Lactuca sativa HOM05D005467 ORTHO05D006523 2.4e-35 154.1 95 78.9
Lsat_1_v5_gn_7_58700 Lactuca sativa HOM05D005467 ORTHO05D006523 3.2e-35 153.7 95 78.9
PGSC0003DMG400023165 Solanum tuberosum HOM05D005467 ORTHO05D006523 9.2e-35 152.1 182 44.0
Nitab4.5_0004367g0150 Nicotiana tabacum HOM05D005467 ORTHO05D006523 1.2e-34 151.8 133 54.9
Nitab4.5_0002820g0080 Nicotiana tabacum HOM05D005467 ORTHO05D006523 5.1e-33 146.4 125 56.0
Nitab4.5_0019054g0020 Nicotiana tabacum HOM05D005467 ORTHO05D006523 6.6e-33 146.0 272 34.2
RcHm_v2.0_Chr3g0493761 Rosa chinensis HOM05D005467 ORTHO05D006523 2.4e-30 137.5 85 80.0
PGSC0003DMG400017876 Solanum tuberosum HOM05D005467 ORTHO05D006523 9.0e-30 135.6 206 36.9
Solyc02g038700.3 Solanum lycopersicum HOM05D005467 ORTHO05D006523 3.8e-28 130.2 257 31.5
Nitab4.5_0002820g0070 Nicotiana tabacum HOM05D005467 ORTHO05D006523 2.4e-27 127.5 144 46.5
Nitab4.5_0000688g0010 Nicotiana tabacum HOM05D005467 ORTHO05D006523 1.2e-26 125.2 169 41.4
Lsat_1_v5_gn_6_22900 Lactuca sativa HOM05D005467 ORTHO05D006523 7.3e-24 115.9 76 76.3
Phvul.008G137000 Phaseolus vulgaris HOM05D005467 ORTHO05D006523 9.0e-22 109.0 55 87.3
CDE07G1108 Ceratophyllum demersum HOM05D005467 ORTHO05D006523 6.0e-18 96.3 80 53.8
PGSC0003DMG400017875 Solanum tuberosum HOM05D005467 ORTHO05D006523 1.8e-17 94.7 77 51.9
PGSC0003DMG400038827 Solanum tuberosum HOM05D005467 ORTHO05D006523 6.2e-15 86.3 104 35.6
SEGI_39271 Sequoiadendron giganteum HOM05D005467 ORTHO05D006523 1.2e-10 72.0 85 49.4
Lsat_1_v5_gn_9_124480 Lactuca sativa HOM05D001159 ORTHO05D001712 1.9e-08 64.7 83 44.6
arahy.Tifrunner.gnm1.ann1.68D7VA Arachis hypogaea HOM05D007334 ORTHO05D011873 3.3e-08 63.9 67 53.7
MD05G1282800 Malus domestica HOM05D005467 ORTHO05D006523 5.6e-08 63.2 179 29.1
CDE07G1559 Ceratophyllum demersum HOM05D005467 ORTHO05D006523 8.2e-07 59.3 57 56.1
MBI10_g06898_MAGBIO Magnolia biondii HOM05D002523 ORTHO05D006523 1.8e-06 58.2 34 82.4
Cre12.g549600 Chlamydomonas reinhardtii HOM05D005467 ORTHO05D006523 5.3e-06 56.6 217 26.7
MBI05_g15354_MAGBIO Magnolia biondii HOM05D002523 ORTHO05D022880 5.3e-06 56.6 44 68.2


User provided reference genes

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