Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR119G0252 Punica granatum HOM05D001496 ORTHO05D007453 2.3e-232 808.5 410 100.0
PGR119G1256 Punica granatum HOM05D001496 ORTHO05D007453 2.3e-232 808.5 410 100.0
Eucgr.H01160 Eucalyptus grandis HOM05D001496 ORTHO05D007453 7.1e-165 584.3 443 70.7
Cfa005950 Carpinus fangiana HOM05D001496 ORTHO05D007453 1.1e-157 560.5 441 67.8
Atru.chr5.1181 Acer truncatum HOM05D001496 ORTHO05D007453 1.9e-157 559.7 425 68.2
HanXRQChr12g0382731 Helianthus annuus HOM05D001496 ORTHO05D007453 4.2e-157 558.5 438 65.1
Rhsim13G0012500 Rhododendron simsii HOM05D001496 ORTHO05D007453 7.1e-157 557.8 413 69.7
Actinidia24335 Actinidia chinensis HOM05D001496 ORTHO05D007453 1.2e-156 557.0 416 69.5
vmacro02468 Vaccinium macrocarpon HOM05D001496 ORTHO05D007453 1.2e-156 557.0 413 70.0
MD11G1304600 Malus domestica HOM05D001496 ORTHO05D007453 1.3e-155 553.5 416 67.3
Manes.05G064100 Manihot esculenta HOM05D001496 ORTHO05D007453 1.8e-155 553.1 429 67.8
FAN15G3342 Fragaria x ananassa HOM05D001496 ORTHO05D007453 3.0e-155 552.4 435 65.5
Prupe.8G258400 Prunus persica HOM05D001496 ORTHO05D007453 5.1e-155 551.6 420 67.9
RcHm_v2.0_Chr6g0293561 Rosa chinensis HOM05D001496 ORTHO05D007453 1.5e-154 550.1 452 64.2
Sabra14G0097800 Salix brachista HOM05D001496 ORTHO05D007453 1.5e-154 550.1 433 66.5
Ciclev10020260m.g Citrus clementina HOM05D001496 ORTHO05D007453 3.3e-154 548.9 408 68.6
Haze_04897 Corylus avellana HOM05D001496 ORTHO05D007453 3.3e-154 548.9 446 66.4
TWI14G0104 Tripterygium wilfordii HOM05D001496 ORTHO05D007453 3.3e-154 548.9 429 66.7
Potri.014G131600 Populus trichocarpa HOM05D001496 ORTHO05D007453 9.6e-154 547.4 433 67.0
FAN24G2787 Fragaria x ananassa HOM05D001496 ORTHO05D007453 2.8e-153 545.8 426 65.7
Cpa.g.sc9.209 Carica papaya HOM05D001496 ORTHO05D007453 3.7e-153 545.4 436 66.5
Duzib133G1333 Durio zibethinus HOM05D001496 ORTHO05D007453 4.8e-153 545.0 407 69.5
Hma1.2p1_0209F.1_g088590 Hydrangea macrophylla HOM05D001496 ORTHO05D007453 4.8e-153 545.0 416 67.3
Lj1g0019023 Lotus japonicus HOM05D001496 ORTHO05D007453 4.8e-153 545.0 427 67.2
Thecc.01G297200 Theobroma cacao HOM05D001496 ORTHO05D007453 1.1e-152 543.9 429 67.6
GSVIVG01027976001 Vitis vinifera HOM05D001496 ORTHO05D007453 1.8e-152 543.1 447 64.7
arahy.Tifrunner.gnm1.ann1.D4F8D3 Arachis hypogaea HOM05D001496 ORTHO05D007453 3.1e-152 542.3 427 67.7
arahy.Tifrunner.gnm1.ann1.RVL32D Arachis hypogaea HOM05D001496 ORTHO05D007453 5.3e-152 541.6 427 67.4
Glyma.19G210000 Glycine max HOM05D001496 ORTHO05D007453 9.0e-152 540.8 441 66.0
Aqoxy2G02984 Aquilegia oxysepala HOM05D001496 ORTHO05D007453 2.6e-151 539.3 409 67.5
Glyma.03G213200 Glycine max HOM05D001496 ORTHO05D007453 1.3e-150 537.0 440 65.5
Psat3g022520 Pisum sativum HOM05D001496 ORTHO05D007453 1.3e-150 537.0 451 65.0
CANSAT25G1124 Cannabis sativa HOM05D001496 ORTHO05D007453 1.7e-150 536.6 406 66.7
Lalb_Chr04g0259811 Lupinus albus HOM05D001496 ORTHO05D007453 1.1e-149 533.9 412 67.2
CSS0045492 Camellia sinensis var. sinensis HOM05D001496 ORTHO05D007453 5.5e-149 531.6 413 66.6
TAR365G0358 Trochodendron aralioides HOM05D001496 ORTHO05D007453 5.5e-149 531.6 446 64.1
SalBow3G1333 Salvia bowleyana HOM05D001496 ORTHO05D007453 1.6e-148 530.0 407 66.1
MELO3C016018.2 Cucumis melo HOM05D001496 ORTHO05D007453 6.1e-148 528.1 426 63.8
TPR.G9626 Trifolium pratense HOM05D001496 ORTHO05D007453 6.1e-148 528.1 446 64.1
Solyc09g074900.4 Solanum lycopersicum HOM05D001496 ORTHO05D007453 2.3e-147 526.2 407 65.6
Sopen09g029720 Solanum pennellii HOM05D001496 ORTHO05D007453 3.0e-147 525.8 407 65.4
Nitab4.5_0005474g0020 Nicotiana tabacum HOM05D001496 ORTHO05D007453 5.1e-147 525.0 446 62.8
PSO170G1216 Papaver somniferum HOM05D001496 ORTHO05D007453 5.1e-147 525.0 424 63.7
Sc10g0000910 Simmondsia chinensis HOM05D001496 ORTHO05D007453 1.1e-146 523.9 419 64.0
PGSC0003DMG400011393 Solanum tuberosum HOM05D001496 ORTHO05D007453 1.1e-146 523.9 414 64.7
Medtr7g108620 Medicago truncatula HOM05D001496 ORTHO05D007453 1.5e-146 523.5 454 63.2
Aa31LG1G29100 Aethionema arabicum HOM05D001496 ORTHO05D007453 1.9e-146 523.1 438 64.6
Gorai.008G011100 Gossypium raimondii HOM05D001496 ORTHO05D007453 5.7e-146 521.5 407 67.3
Hund16196 Selenicereus undatus HOM05D001496 ORTHO05D007453 9.7e-146 520.8 407 65.4
Lj2C1190T13 Lonicera japonica HOM05D001496 ORTHO05D007453 1.6e-145 520.0 414 64.7
DCAR_002814 Daucus carota HOM05D001496 ORTHO05D007453 2.2e-145 519.6 416 63.9
CsaV3_7G029100 Cucumis sativus L. HOM05D001496 ORTHO05D007453 2.8e-145 519.2 421 63.4
THA.LOC104802172 Tarenaya hassleriana HOM05D001496 ORTHO05D007453 2.8e-145 519.2 437 62.7
BcaB02g08748 Brassica carinata HOM05D001496 ORTHO05D007453 4.8e-145 518.5 404 66.1
Ca_09147_v3 Cicer arietinum L. HOM05D001496 ORTHO05D007453 8.2e-145 517.7 451 63.2
Gohir.D12G011100 Gossypium hirsutum HOM05D001496 ORTHO05D007453 8.2e-145 517.7 407 67.1
EL10Ac2g04497 Beta vulgaris HOM05D001496 ORTHO05D007453 1.1e-144 517.3 414 64.7
Gohir.A12G010700 Gossypium hirsutum HOM05D001496 ORTHO05D007453 1.8e-144 516.5 440 63.6
AL4G47330 Arabidopsis lyrata HOM05D001496 ORTHO05D007453 2.4e-144 516.2 417 64.5
Cc01_g20650 Coffea canephora HOM05D001496 ORTHO05D007453 2.4e-144 516.2 431 64.3
ClCG09G006040 Citrullus lanatus HOM05D001496 ORTHO05D007453 3.1e-144 515.8 427 62.3
Migut.D00196 Erythranthe guttata HOM05D001496 ORTHO05D007453 6.9e-144 514.6 405 64.4
ECA248G3024 Erigeron canadensis HOM05D001496 ORTHO05D007453 9.0e-144 514.2 396 65.4
CAN.G339.32 Capsicum annuum HOM05D001496 ORTHO05D007453 1.2e-143 513.8 414 63.5
Carub.0004s3047 Capsella rubella HOM05D001496 ORTHO05D007453 1.7e-142 510.0 435 62.8
Lsat_1_v5_gn_5_190521 Lactuca sativa HOM05D001496 ORTHO05D007453 7.2e-141 504.6 439 61.3
CiPaw.07G106500 Carya illinoinensis HOM05D001496 ORTHO05D007453 9.4e-141 504.2 443 62.3
Thhalv10001458m.g Eutrema salsugineum HOM05D001496 ORTHO05D007453 1.2e-140 503.8 432 61.3
CDE02G4632 Ceratophyllum demersum HOM05D001496 ORTHO05D007453 6.1e-140 501.5 394 65.5
AUR62023205 Chenopodium quinoa HOM05D001496 ORTHO05D007453 1.0e-139 500.7 411 64.0
Sed0004349 Sechium edule HOM05D001496 ORTHO05D007453 1.0e-139 500.7 385 65.7
AUR62023251 Chenopodium quinoa HOM05D001496 ORTHO05D007453 3.0e-139 499.2 411 64.2
A05p00200 Brassica napus HOM05D001496 ORTHO05D007453 1.5e-138 496.9 428 61.7
Dinv19717 Davidia involucrata HOM05D001496 ORTHO05D007453 5.7e-138 495.0 391 67.8
Peaxi162Scf00067g02528 Petunia axillaris HOM05D001496 ORTHO05D007453 2.8e-137 492.7 414 62.1
Lalb_Chr04g0259801 Lupinus albus HOM05D001496 ORTHO05D007453 3.7e-137 492.3 442 60.4
AT2G47760 Arabidopsis thaliana HOM05D001496 ORTHO05D007453 6.3e-137 491.5 418 62.7
Oeu048346.1 Olea europaea HOM05D001496 ORTHO05D007453 1.2e-135 487.3 516 54.3
unitig_0.g1180 Utricularia gibba HOM05D001496 ORTHO05D007453 1.0e-134 484.2 406 61.3
HPP92_016896 Vanilla planifolia HOM05D001496 ORTHO05D007453 1.0e-134 484.2 428 59.3
BcaC02g12544 Brassica carinata HOM05D001496 ORTHO05D007453 6.5e-134 481.5 403 62.8
Nitab4.5_0000619g0030 Nicotiana tabacum HOM05D001496 ORTHO05D007453 8.5e-134 481.1 503 54.3
C04p00120 Brassica napus HOM05D001496 ORTHO05D007453 1.4e-133 480.3 409 62.3
Sp4g29690 Schrenkiella parvula HOM05D001496 ORTHO05D007453 1.4e-133 480.3 449 59.5
Nn7g38144 Nelumbo nucifera HOM05D001496 ORTHO05D007453 7.2e-133 478.0 417 61.6
Zm00001eb122900 Zea mays HOM05D001496 ORTHO05D007453 5.1e-131 471.9 408 60.8
COL.COLO4_23374 Corchorus olitorius HOM05D001496 ORTHO05D007453 5.3e-128 461.8 386 65.5
QL12p027136 Quercus lobata HOM05D001496 ORTHO05D007453 6.5e-126 454.9 363 68.3
ATR0796G343 Amborella trichopoda HOM05D001496 ORTHO05D007453 8.5e-126 454.5 384 60.7
Phvul.001G205800 Phaseolus vulgaris HOM05D001496 ORTHO05D007453 1.5e-125 453.8 389 64.5
Mapoly0077s0004 Marchantia polymorpha HOM05D001496 ORTHO05D007453 1.7e-121 440.3 385 58.2
Pp3c10_8510 Physcomitrium patens HOM05D001496 ORTHO05D007453 5.9e-119 431.8 403 55.3
TAR633G2480 Trochodendron aralioides HOM05D001496 ORTHO05D007453 1.3e-118 430.6 375 64.8
FvH4_2g25370 Fragaria vesca HOM05D001496 ORTHO05D007453 2.0e-114 416.8 331 65.0
AagrBONN_evm.TU.Sc2ySwM_368.922 Anthoceros agrestis HOM05D001496 ORTHO05D007453 2.8e-113 412.9 398 55.0
SMO111G0159 Selaginella moellendorffii HOM05D001496 ORTHO05D007453 4.2e-109 399.1 390 53.3
SGA_v2.0_scaffold1G00377 Striga asiatica HOM05D000802 ORTHO05D001074 5.2e-107 392.1 375 57.9
Hma1.2p1_0209F.1_g088600 Hydrangea macrophylla HOM05D001496 ORTHO05D007453 8.3e-105 384.8 416 51.9
CARHR143130 Cardamine hirsuta HOM05D001496 ORTHO05D007453 1.6e-100 370.5 333 59.5
BraA05t19016Z Brassica rapa HOM05D001496 ORTHO05D007453 1.4e-96 357.5 245 73.9
Ah.16g101380 Amaranthus hybridus HOM05D001496 ORTHO05D007453 8.6e-94 348.2 310 63.5
CBR_g23454 Chara braunii HOM05D001496 ORTHO05D007453 1.3e-89 334.3 393 47.6
HPP92_016892 Vanilla planifolia HOM05D001496 ORTHO05D007453 2.9e-89 333.2 305 56.4
FAN15G0073 Fragaria x ananassa HOM05D001496 ORTHO05D007453 6.6e-86 322.0 221 75.6
MD03G1285200 Malus domestica HOM05D001496 ORTHO05D007453 5.6e-85 318.9 234 72.6
TAR633G0725 Trochodendron aralioides HOM05D001496 ORTHO05D007453 5.6e-77 292.4 252 63.9
MCO05G420 Micromonas commoda HOM05D001496 ORTHO05D007453 2.1e-76 290.4 380 43.4
FAN20G0671 Fragaria x ananassa HOM05D001496 ORTHO05D007453 4.0e-75 286.2 350 50.6
PRCOL_00006487 Prasinoderma coloniale HOM05D001496 ORTHO05D007453 1.5e-61 241.1 388 40.5
MD03G1285100 Malus domestica HOM05D001496 ORTHO05D007453 1.4e-59 234.6 219 53.4
Haze_26252 Corylus avellana HOM05D001496 ORTHO05D007453 1.6e-52 211.1 369 37.9
COL.COLO4_15168 Corchorus olitorius HOM05D001496 ORTHO05D007453 1.4e-51 208.0 120 83.3
Gohir.A05G239300 Gossypium hirsutum HOM05D001496 ORTHO05D007453 1.4e-51 208.0 154 70.1
COL.COLO4_05649 Corchorus olitorius HOM05D001496 ORTHO05D007453 7.1e-48 195.7 112 84.8
Gohir.A01G111300 Gossypium hirsutum HOM05D001496 ORTHO05D007453 6.9e-43 179.1 138 68.1
Gohir.A02G071100 Gossypium hirsutum HOM05D001496 ORTHO05D007453 1.7e-41 174.5 138 66.7
Gohir.A12G153600 Gossypium hirsutum HOM05D001496 ORTHO05D007453 3.2e-40 170.2 138 65.2
Os01g0172000 Oryza sativa ssp. japonica HOM05D001496 ORTHO05D007453 8.4e-33 145.6 103 65.0
A03p26050 Brassica napus HOM05D000073 ORTHO05D000033 2.1e-31 141.0 85 77.6
BraA03t11820Z Brassica rapa HOM05D001496 ORTHO05D007453 6.1e-31 139.4 85 76.5
Gohir.A07G160700 Gossypium hirsutum HOM05D001496 ORTHO05D007453 2.5e-29 134.0 94 75.5
MBI19_g29447_MAGBIO Magnolia biondii HOM05D001496 ORTHO05D007453 8.5e-25 119.0 84 70.2
FAN27G2092 Fragaria x ananassa HOM05D001496 ORTHO05D007453 1.9e-24 117.9 88 63.6
SEGI_39661 Sequoiadendron giganteum HOM05D001496 ORTHO05D007453 7.2e-24 115.9 72 66.7
MBI14_g09685_MAGBIO Magnolia biondii HOM05D001496 ORTHO05D007453 3.0e-22 110.5 70 75.7
SEGI_31251 Sequoiadendron giganteum HOM05D001496 ORTHO05D007453 1.5e-21 108.2 84 59.5
BolC3t15455H Brassica oleracea HOM05D001496 ORTHO05D007453 4.1e-19 100.1 126 50.0
QL02p058842 Quercus lobata HOM05D001496 ORTHO05D000125 1.0e-17 95.5 49 83.7
C03p31050 Brassica napus HOM05D001496 ORTHO05D007453 2.9e-17 94.0 128 48.4
Actinidia02729 Actinidia chinensis HOM05D001496 ORTHO05D007453 4.2e-16 90.1 211 37.9
QL02p059219 Quercus lobata HOM05D001496 ORTHO05D007453 2.0e-13 81.3 51 74.5
HanXRQChr05g0138141 Helianthus annuus HOM05D001496 ORTHO05D007453 7.4e-13 79.3 43 76.7
Gohir.A01G167500 Gossypium hirsutum HOM05D001496 ORTHO05D047734 1.2e-10 72.0 41 78.0


User provided reference genes

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