Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR008G0006 Punica granatum HOM05D005188 ORTHO05D006153 1.0e-85 320.1 167 100.0
PGR119G0239 Punica granatum HOM05D005188 ORTHO05D006153 1.0e-85 320.1 167 100.0
COL.COLO4_35748 Corchorus olitorius HOM05D005188 ORTHO05D006153 2.4e-66 255.8 173 78.6
ClCG01G015380 Citrullus lanatus HOM05D005188 ORTHO05D006153 4.5e-65 251.5 172 76.7
Potri.005G063300 Populus trichocarpa HOM05D005188 ORTHO05D006153 5.8e-65 251.1 173 76.3
Sabra05G0052500 Salix brachista HOM05D005188 ORTHO05D006153 7.6e-65 250.8 173 77.5
MELO3C008060.2 Cucumis melo HOM05D005188 ORTHO05D006153 9.9e-65 250.4 172 76.2
Potri.007G105900 Populus trichocarpa HOM05D005188 ORTHO05D006153 9.9e-65 250.4 173 76.9
Thecc.01G132900 Theobroma cacao HOM05D005188 ORTHO05D006153 4.9e-64 248.1 174 76.4
Lj1g0024625 Lotus japonicus HOM05D005188 ORTHO05D006153 8.4e-64 247.3 168 75.6
CANSAT01G0911 Cannabis sativa HOM05D005188 ORTHO05D006153 1.9e-63 246.1 170 77.6
CsaV3_6G041600 Cucumis sativus L. HOM05D005188 ORTHO05D006153 2.4e-63 245.7 172 74.4
Ciclev10002687m.g Citrus clementina HOM05D005188 ORTHO05D006153 4.2e-63 245.0 171 76.0
Manes.12G156000 Manihot esculenta HOM05D005188 ORTHO05D006153 1.2e-62 243.4 173 75.7
TWI75G0084 Tripterygium wilfordii HOM05D005188 ORTHO05D006153 2.1e-62 242.7 167 73.7
Ca_16917_v3 Cicer arietinum L. HOM05D005188 ORTHO05D006153 6.0e-62 241.1 172 74.4
Cpa.g.sc3.345 Carica papaya HOM05D005188 ORTHO05D006153 7.9e-62 240.7 174 74.7
Glyma.06G150300 Glycine max HOM05D005188 ORTHO05D006153 7.9e-62 240.7 167 71.9
QL02p001672 Quercus lobata HOM05D005188 ORTHO05D006153 7.9e-62 240.7 173 72.8
Gohir.D11G230800 Gossypium hirsutum HOM05D005188 ORTHO05D006153 1.8e-61 239.6 175 73.7
CAN.G792.16 Capsicum annuum HOM05D005188 ORTHO05D006153 2.3e-61 239.2 168 75.0
Gohir.A11G226800 Gossypium hirsutum HOM05D005188 ORTHO05D006153 2.3e-61 239.2 175 73.7
Cfa002897 Carpinus fangiana HOM05D005188 ORTHO05D006153 3.0e-61 238.8 176 73.9
Gohir.A05G384500 Gossypium hirsutum HOM05D005188 ORTHO05D006153 3.0e-61 238.8 173 74.0
TWI79G1553 Tripterygium wilfordii HOM05D005188 ORTHO05D006153 3.9e-61 238.4 167 73.1
Haze_25240 Corylus avellana HOM05D005188 ORTHO05D006153 5.1e-61 238.0 176 73.3
Medtr3g095540 Medicago truncatula HOM05D005188 ORTHO05D006153 6.7e-61 237.7 174 74.7
CiPaw.04G081900 Carya illinoinensis HOM05D005188 ORTHO05D006153 8.7e-61 237.3 177 72.3
Lalb_Chr13g0296451 Lupinus albus HOM05D005188 ORTHO05D006153 8.7e-61 237.3 176 72.2
VMungo0251G2948 Vigna mungo HOM05D005188 ORTHO05D006153 8.7e-61 237.3 174 73.0
Glyma.04G215800 Glycine max HOM05D005188 ORTHO05D006153 1.1e-60 236.9 168 72.0
Gorai.012G035200 Gossypium raimondii HOM05D005188 ORTHO05D006153 1.1e-60 236.9 173 73.4
CiPaw.03G121400 Carya illinoinensis HOM05D005188 ORTHO05D006153 1.5e-60 236.5 176 72.7
Cc10_g12590 Coffea canephora HOM05D005188 ORTHO05D006153 1.5e-60 236.5 170 70.0
TAR381G0300 Trochodendron aralioides HOM05D005188 ORTHO05D006153 1.9e-60 236.1 175 72.6
Migut.H00702 Erythranthe guttata HOM05D005188 ORTHO05D006153 7.4e-60 234.2 169 72.2
Dinv24366 Davidia involucrata HOM05D005188 ORTHO05D006153 1.6e-59 233.0 171 71.3
Hund23270 Selenicereus undatus HOM05D005188 ORTHO05D006153 1.6e-59 233.0 176 73.9
Gorai.003G066700 Gossypium raimondii HOM05D005188 ORTHO05D006153 2.1e-59 232.6 182 70.9
MBI06_g39404_MAGBIO Magnolia biondii HOM05D005188 ORTHO05D006153 3.7e-59 231.9 173 72.8
CDE08G0648 Ceratophyllum demersum HOM05D005188 ORTHO05D006153 4.8e-59 231.5 172 71.5
CARHR277950 Cardamine hirsuta HOM05D005188 ORTHO05D006153 8.1e-59 230.7 171 69.0
Sabra07G0086700 Salix brachista HOM05D005188 ORTHO05D006153 1.1e-58 230.3 172 72.1
Phvul.002G269400 Phaseolus vulgaris HOM05D005188 ORTHO05D006153 1.4e-58 229.9 173 71.1
MSTRG.2649 Avicennia marina HOM05D005188 ORTHO05D006153 2.4e-58 229.2 167 70.7
Sed0019160 Sechium edule HOM05D005188 ORTHO05D006153 2.4e-58 229.2 174 69.5
SalBow1G2748 Salvia bowleyana HOM05D005188 ORTHO05D006153 4.0e-58 228.4 167 71.9
AUR62017881 Chenopodium quinoa HOM05D005188 ORTHO05D006153 5.3e-58 228.0 171 71.9
Hma1.2p1_0476F.1_g160790 Hydrangea macrophylla HOM05D005188 ORTHO05D006153 5.3e-58 228.0 172 71.5
Nn2g12180 Nelumbo nucifera HOM05D005188 ORTHO05D006153 6.9e-58 227.6 174 72.4
AL8G41300 Arabidopsis lyrata HOM05D005188 ORTHO05D006153 9.0e-58 227.3 172 67.4
CDE02G4401 Ceratophyllum demersum HOM05D005188 ORTHO05D006153 1.2e-57 226.9 172 70.9
AT5G64040 Arabidopsis thaliana HOM05D005188 ORTHO05D006153 1.5e-57 226.5 172 66.9
Oeu037826.1 Olea europaea HOM05D005188 ORTHO05D006153 1.5e-57 226.5 167 69.5
Aa31LG1G17870 Aethionema arabicum HOM05D005188 ORTHO05D006153 2.6e-57 225.7 173 68.2
Ah.02g121530 Amaranthus hybridus HOM05D005188 ORTHO05D006153 2.6e-57 225.7 168 71.4
TPR.G18740 Trifolium pratense HOM05D005188 ORTHO05D006153 2.6e-57 225.7 176 69.9
Carub.0008s2482 Capsella rubella HOM05D005188 ORTHO05D006153 4.5e-57 224.9 172 66.3
Prupe.4G271200 Prunus persica HOM05D005188 ORTHO05D006153 4.5e-57 224.9 171 70.2
arahy.Tifrunner.gnm1.ann1.DJM1RY Arachis hypogaea HOM05D005188 ORTHO05D006153 7.6e-57 224.2 175 71.4
arahy.Tifrunner.gnm1.ann1.V5WWJ8 Arachis hypogaea HOM05D005188 ORTHO05D006153 9.9e-57 223.8 175 70.9
Sp2g27110 Schrenkiella parvula HOM05D005188 ORTHO05D006153 9.9e-57 223.8 171 66.7
BcaB02g09793 Brassica carinata HOM05D005188 ORTHO05D006153 1.7e-56 223.0 171 67.3
BcaC01g02658 Brassica carinata HOM05D005188 ORTHO05D006153 2.2e-56 222.6 171 66.7
BcaC01g02659 Brassica carinata HOM05D005188 ORTHO05D006153 2.2e-56 222.6 171 66.7
Thhalv10005005m.g Eutrema salsugineum HOM05D005188 ORTHO05D006153 2.2e-56 222.6 171 66.1
Solyc08g013670.3 Solanum lycopersicum HOM05D005188 ORTHO05D006153 2.2e-56 222.6 167 70.7
MBI03_g42548_MAGBIO Magnolia biondii HOM05D005188 ORTHO05D006153 2.9e-56 222.2 171 69.0
Aqoxy5G02315 Aquilegia oxysepala HOM05D005188 ORTHO05D006153 4.9e-56 221.5 172 69.2
Lj4g0001203 Lotus japonicus HOM05D005188 ORTHO05D006153 4.9e-56 221.5 171 70.8
Sopen08g004510 Solanum pennellii HOM05D005188 ORTHO05D006153 4.9e-56 221.5 167 71.3
MD15G1441800 Malus domestica HOM05D005188 ORTHO05D006153 6.4e-56 221.1 170 68.8
A06p30750 Brassica napus HOM05D005188 ORTHO05D006153 8.4e-56 220.7 171 66.7
Psat5g063680 Pisum sativum HOM05D005188 ORTHO05D006153 8.4e-56 220.7 171 70.2
Actinidia06616 Actinidia chinensis HOM05D005188 ORTHO05D006153 1.4e-55 219.9 173 70.5
Sed0010246 Sechium edule HOM05D005188 ORTHO05D006153 1.4e-55 219.9 170 68.8
SGA_v2.0_scaffold370G50114 Striga asiatica HOM05D005188 ORTHO05D006153 1.4e-55 219.9 167 71.9
BcaB07g29717 Brassica carinata HOM05D005188 ORTHO05D006153 2.4e-55 219.2 170 65.9
unitig_899.g14682 Utricularia gibba HOM05D005188 ORTHO05D006153 2.4e-55 219.2 168 69.0
C09p09640 Brassica napus HOM05D005188 ORTHO05D006153 5.5e-55 218.0 170 67.1
Lj2A607T35 Lonicera japonica HOM05D005188 ORTHO05D006153 5.5e-55 218.0 171 67.8
CSS0010064 Camellia sinensis var. sinensis HOM05D005188 ORTHO05D006153 1.2e-54 216.9 175 68.0
CSS0045275 Camellia sinensis var. sinensis HOM05D005188 ORTHO05D006153 1.2e-54 216.9 175 68.0
PGSC0003DMG400005805 Solanum tuberosum HOM05D005188 ORTHO05D006153 1.6e-54 216.5 174 69.5
C02p63110 Brassica napus HOM05D005188 ORTHO05D006153 2.1e-54 216.1 170 65.3
BolC2t12383H Brassica oleracea HOM05D005188 ORTHO05D006153 2.1e-54 216.1 170 65.3
BcaC03g18240 Brassica carinata HOM05D005188 ORTHO05D006153 3.5e-54 215.3 170 65.3
FvH4_1g24360 Fragaria vesca HOM05D005188 ORTHO05D006153 3.5e-54 215.3 167 70.1
FAN19G1208 Fragaria x ananassa HOM05D005188 ORTHO05D006153 3.5e-54 215.3 167 70.1
HanXRQChr04g0107551 Helianthus annuus HOM05D005188 ORTHO05D006153 3.5e-54 215.3 171 70.2
MBI06_g27435_MAGBIO Magnolia biondii HOM05D005188 ORTHO05D006153 1.0e-53 213.8 149 76.5
Nitab4.5_0000673g0170 Nicotiana tabacum HOM05D005188 ORTHO05D006153 1.3e-53 213.4 171 69.0
BolC9t53875H Brassica oleracea HOM05D005188 ORTHO05D006153 3.9e-53 211.8 181 63.5
FAN28G1395 Fragaria x ananassa HOM05D002517 ORTHO05D003040 6.7e-53 211.1 164 69.5
MD01G1004300 Malus domestica HOM05D005188 ORTHO05D006153 8.7e-53 210.7 170 65.3
Peaxi162Scf01257g00019 Petunia axillaris HOM05D005188 ORTHO05D006153 1.1e-52 210.3 180 65.0
DCAR_001211 Daucus carota HOM05D005188 ORTHO05D006153 3.3e-52 208.8 170 67.1
THA.LOC104800083 Tarenaya hassleriana HOM05D005188 ORTHO05D006153 4.3e-52 208.4 174 65.5
Lsat_1_v5_gn_1_10061 Lactuca sativa HOM05D005188 ORTHO05D006153 5.6e-52 208.0 172 65.1
RcHm_v2.0_Chr2g0120891 Rosa chinensis HOM05D005188 ORTHO05D006153 9.6e-52 207.2 167 67.1
GSVIVG01026478001 Vitis vinifera HOM05D005188 ORTHO05D006153 1.3e-51 206.8 167 64.7
ATR0987G005 Amborella trichopoda HOM05D005188 ORTHO05D006153 2.1e-51 206.1 178 62.9
FAN26G2437 Fragaria x ananassa HOM05D002517 ORTHO05D006153 2.8e-51 205.7 167 68.9
ECA247G1960 Erigeron canadensis HOM05D005188 ORTHO05D006153 3.7e-51 205.3 167 65.9
HPP92_019391 Vanilla planifolia HOM05D005188 ORTHO05D006153 3.7e-51 205.3 171 65.5
PSO541G2775 Papaver somniferum HOM05D005188 ORTHO05D006153 1.4e-50 203.4 170 65.3
vmacro12795 Vaccinium macrocarpon HOM05D005188 ORTHO05D006153 2.4e-50 202.6 177 64.4
Atru.chr4.905 Acer truncatum HOM05D005188 ORTHO05D006153 9.0e-50 200.7 170 65.3
PSO675G9377 Papaver somniferum HOM05D005188 ORTHO05D006153 1.5e-49 199.9 170 64.7
Rhsim10G0133700 Rhododendron simsii HOM05D005188 ORTHO05D006153 2.6e-49 199.1 177 66.1
BolC3t18491H Brassica oleracea HOM05D005188 ORTHO05D006153 2.2e-48 196.1 175 60.6
EL10Ac6g15302 Beta vulgaris HOM05D005188 ORTHO05D006153 4.2e-47 191.8 128 78.9
Eucgr.I00200 Eucalyptus grandis HOM05D005188 ORTHO05D006153 1.6e-46 189.9 144 74.3
Zm00001eb409220 Zea mays HOM05D005188 ORTHO05D006153 3.9e-45 185.3 114 78.1
Zm00001eb138650 Zea mays HOM05D005188 ORTHO05D006153 8.7e-45 184.1 167 62.9
A09p08510 Brassica napus HOM05D005188 ORTHO05D006153 1.9e-44 183.0 170 59.4
BraA09t36500Z Brassica rapa HOM05D005188 ORTHO05D006153 1.9e-44 183.0 170 59.4
Oeu050119.1 Olea europaea HOM05D005188 ORTHO05D006153 1.9e-44 183.0 167 58.1
Duzib264G0557 Durio zibethinus HOM05D005188 ORTHO05D006153 2.5e-44 182.6 145 71.0
Os12g0189400 Oryza sativa ssp. japonica HOM05D005188 ORTHO05D006153 1.6e-43 179.9 110 82.7
Duzib147G0711 Durio zibethinus HOM05D005188 ORTHO05D006153 2.8e-43 179.1 145 72.4
C03p62290 Brassica napus HOM05D005188 ORTHO05D006153 3.6e-38 162.2 141 62.4
BraA06t26017Z Brassica rapa HOM05D005188 ORTHO05D006153 1.4e-37 160.2 141 62.4
SEGI_16120 Sequoiadendron giganteum HOM05D005188 ORTHO05D006153 2.5e-36 156.0 124 60.5
Sc16g0003820 Simmondsia chinensis HOM05D005188 ORTHO05D006153 4.1e-34 148.7 143 65.0
SMO144G0055 Selaginella moellendorffii HOM05D005188 ORTHO05D006153 4.5e-33 145.2 82 79.3
Duzib187G0538 Durio zibethinus HOM05D005188 ORTHO05D006153 1.4e-29 133.7 128 64.1
BcaB04g17222 Brassica carinata HOM05D005188 ORTHO05D006153 1.8e-29 133.3 120 58.3
BcaB08g36594 Brassica carinata HOM05D005188 ORTHO05D006153 1.5e-28 130.2 74 82.4
BolC2t07163H Brassica oleracea HOM05D005188 ORTHO05D006153 3.3e-28 129.0 74 81.1
BolC7t41311H Brassica oleracea HOM05D005188 ORTHO05D006153 4.4e-28 128.6 72 83.3
BcaC04g18786 Brassica carinata HOM05D005188 ORTHO05D006153 1.7e-27 126.7 74 79.7
AUR62003566 Chenopodium quinoa HOM05D005188 ORTHO05D006153 4.8e-27 125.2 168 50.6
Mapoly0116s0042 Marchantia polymorpha HOM05D005188 ORTHO05D006153 4.2e-23 112.1 162 45.1
Cre02.g082500 Chlamydomonas reinhardtii HOM05D005188 ORTHO05D006153 2.1e-22 109.8 107 55.1
AagrBONN_evm.TU.Sc2ySwM_362.2803 Anthoceros agrestis HOM05D005188 ORTHO05D006153 3.6e-22 109.0 95 62.1
BcaC03g13890 Brassica carinata HOM05D005188 ORTHO05D006153 2.8e-19 99.4 74 64.9
CBR_g45633 Chara braunii HOM05D005188 ORTHO05D006153 3.1e-18 95.9 96 55.2
MCO09G058 Micromonas commoda HOM05D005188 ORTHO05D006153 7.7e-17 91.3 135 42.2
Nn5g28540 Nelumbo nucifera HOM05D005188 ORTHO05D006153 7.7e-17 91.3 102 57.8
BraA02t09233Z Brassica rapa HOM05D005188 ORTHO05D006153 1.3e-16 90.5 113 51.3
PRCOL_00004565 Prasinoderma coloniale HOM05D005188 ORTHO05D006153 6.5e-16 88.2 79 57.0
Nitab4.5_0005544g0070 Nicotiana tabacum HOM05D005188 ORTHO05D006153 3.2e-15 85.9 107 53.3
A02p43130 Brassica napus HOM05D005188 ORTHO05D006153 8.8e-13 77.8 98 49.0
Gohir.D04G031000 Gossypium hirsutum HOM05D006465 ORTHO05D008207 2.6e-12 76.3 107 51.4
C02p10930 Brassica napus HOM05D005188 ORTHO05D006153 1.5e-07 60.5 30 83.3


User provided reference genes

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