Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR119G0124 Punica granatum HOM05D007293 ORTHO05D009143 1.8e-48 195.7 106 100.0
MD13G1091900 Malus domestica HOM05D007293 ORTHO05D009143 1.8e-27 125.9 106 68.9
Eucgr.H02610 Eucalyptus grandis HOM05D007293 ORTHO05D009143 4.0e-27 124.8 114 71.1
MD16G1092500 Malus domestica HOM05D007293 ORTHO05D009143 6.8e-27 124.0 106 68.9
Prupe.1G253900 Prunus persica HOM05D007293 ORTHO05D009143 2.6e-26 122.1 106 67.9
FvH4_4g34460 Fragaria vesca HOM05D007293 ORTHO05D009143 2.4e-24 115.5 106 67.0
Atru.chr11.2025 Acer truncatum HOM05D007293 ORTHO05D009143 3.2e-24 115.2 107 65.4
RcHm_v2.0_Chr4g0443841 Rosa chinensis HOM05D007293 ORTHO05D009143 3.2e-24 115.2 106 65.1
Thecc.02G249100 Theobroma cacao HOM05D007293 ORTHO05D009143 3.2e-24 115.2 106 66.0
Ciclev10033010m.g Citrus clementina HOM05D007293 ORTHO05D009143 4.1e-24 114.8 107 63.6
THA.LOC104808972 Tarenaya hassleriana HOM05D007293 ORTHO05D009143 4.1e-24 114.8 106 64.2
FAN12G1260 Fragaria x ananassa HOM05D007293 ORTHO05D009143 7.0e-24 114.0 106 66.0
Manes.13G030700 Manihot esculenta HOM05D007293 ORTHO05D009143 7.0e-24 114.0 114 64.0
TWI75G0451 Tripterygium wilfordii HOM05D007293 ORTHO05D009143 1.6e-23 112.8 108 63.0
Duzib268G1575 Durio zibethinus HOM05D007293 ORTHO05D009143 1.3e-22 109.8 106 64.2
FAN17G1887 Fragaria x ananassa HOM05D007293 ORTHO05D009143 1.3e-22 109.8 106 63.2
FAN22G1529 Fragaria x ananassa HOM05D007293 ORTHO05D009143 1.3e-22 109.8 106 63.2
THA.LOC104822141 Tarenaya hassleriana HOM05D007293 ORTHO05D009143 1.3e-22 109.8 106 64.2
Gohir.A03G139900 Gossypium hirsutum HOM05D007293 ORTHO05D009143 1.7e-22 109.4 106 62.3
Gohir.D02G162700 Gossypium hirsutum HOM05D007293 ORTHO05D009143 1.7e-22 109.4 106 62.3
Prupe.5G015600 Prunus persica HOM05D007293 ORTHO05D009143 2.3e-22 109.0 104 63.5
COL.COLO4_36768 Corchorus olitorius HOM05D007293 ORTHO05D009143 3.9e-22 108.2 101 66.3
Gorai.005G182700 Gossypium raimondii HOM05D007293 ORTHO05D009143 3.9e-22 108.2 106 61.3
RcHm_v2.0_Chr4g0443851 Rosa chinensis HOM05D007293 ORTHO05D009143 6.6e-22 107.5 108 63.9
Cfa009144 Carpinus fangiana HOM05D007293 ORTHO05D009143 4.7e-20 101.3 109 60.6
Sp5g25470 Schrenkiella parvula HOM05D007293 ORTHO05D009143 4.7e-20 101.3 106 57.5
CiPaw.05G150900 Carya illinoinensis HOM05D007293 ORTHO05D009143 8.1e-20 100.5 107 61.7
Duzib251G0045 Durio zibethinus HOM05D007293 ORTHO05D009143 8.1e-20 100.5 102 58.8
Thhalv10019350m.g Eutrema salsugineum HOM05D007293 ORTHO05D009143 3.1e-19 98.6 106 56.6
BcaC08g45820 Brassica carinata HOM05D007293 ORTHO05D009143 1.2e-18 96.7 106 59.4
Lalb_Chr09g0326381 Lupinus albus HOM05D007293 ORTHO05D009143 1.2e-18 96.7 107 55.1
BcaB03g15542 Brassica carinata HOM05D007293 ORTHO05D009143 2.6e-18 95.5 107 58.9
Carub.0002s1704 Capsella rubella HOM05D007293 ORTHO05D009143 2.6e-18 95.5 106 56.6
CANSAT01G1482 Cannabis sativa HOM05D007293 ORTHO05D009143 4.4e-18 94.7 106 57.5
CARHR063530 Cardamine hirsuta HOM05D007293 ORTHO05D009143 5.8e-18 94.4 106 54.7
ClCG08G018060 Citrullus lanatus HOM05D007293 ORTHO05D009143 9.8e-18 93.6 110 59.1
BcaB05g24561 Brassica carinata HOM05D007293 ORTHO05D009143 1.3e-17 93.2 107 57.9
AL2G29660 Arabidopsis lyrata HOM05D007293 ORTHO05D009143 2.2e-17 92.4 106 53.8
Glyma.02G034600 Glycine max HOM05D007293 ORTHO05D009143 2.2e-17 92.4 107 57.9
AT1G70350 Arabidopsis thaliana HOM05D007293 ORTHO05D009143 2.9e-17 92.0 106 53.8
BcaC03g15179 Brassica carinata HOM05D007293 ORTHO05D009143 2.4e-16 89.0 107 56.1
BolC6t38732H Brassica oleracea HOM05D007293 ORTHO05D009143 2.4e-16 89.0 100 58.0
Dinv33495 Davidia involucrata HOM05D007293 ORTHO05D009143 2.4e-16 89.0 112 56.2
Lj2g0011400 Lotus japonicus HOM05D007293 ORTHO05D009143 5.4e-16 87.8 109 54.1
C06p36130 Brassica napus HOM05D007293 ORTHO05D009143 7.1e-16 87.4 100 58.0
Psat0s2875g0160 Pisum sativum HOM05D007293 ORTHO05D009143 9.2e-16 87.0 108 51.9
TPR.G13591 Trifolium pratense HOM05D007293 ORTHO05D009143 1.2e-15 86.7 110 51.8
A02p16490 Brassica napus HOM05D007293 ORTHO05D009143 1.6e-15 86.3 106 52.8
BraA02t06707Z Brassica rapa HOM05D007293 ORTHO05D009143 1.6e-15 86.3 106 52.8
FAN07G2443 Fragaria x ananassa HOM05D007293 ORTHO05D009143 2.7e-15 85.5 89 62.9
C02p27590 Brassica napus HOM05D007293 ORTHO05D009143 3.5e-15 85.1 106 54.7
Phvul.002G071600 Phaseolus vulgaris HOM05D007293 ORTHO05D009143 3.5e-15 85.1 107 55.1
Psat2g106240 Pisum sativum HOM05D007293 ORTHO05D009143 1.7e-14 82.8 108 49.1
Haze_12178 Corylus avellana HOM05D007293 ORTHO05D009143 3.9e-14 81.6 108 52.8
GSVIVG01032483001 Vitis vinifera HOM05D007293 ORTHO05D009143 6.6e-14 80.9 112 50.9
Lj7A591G78 Lonicera japonica HOM05D007293 ORTHO05D009143 1.1e-13 80.1 112 50.9
BolC2t08814H Brassica oleracea HOM05D007293 ORTHO05D009143 2.5e-13 79.0 106 51.9
CSS0045153 Camellia sinensis var. sinensis HOM05D007293 ORTHO05D009143 2.5e-13 79.0 108 50.0
Migut.K01369 Erythranthe guttata HOM05D007293 ORTHO05D009143 3.3e-13 78.6 108 50.9
TPR.G13583 Trifolium pratense HOM05D007293 ORTHO05D009143 3.3e-13 78.6 110 48.2
arahy.Tifrunner.gnm1.ann1.F37JRW Arachis hypogaea HOM05D007293 ORTHO05D009143 7.3e-13 77.4 106 54.7
EL10Ac6g13673 Beta vulgaris HOM05D007293 ORTHO05D009143 9.5e-13 77.0 114 53.5
Medtr5g034340 Medicago truncatula HOM05D007293 ORTHO05D009143 9.5e-13 77.0 105 47.6
CsaV3_4G037870 Cucumis sativus L. HOM05D001719 ORTHO05D008883 1.2e-12 76.6 105 52.4
CSS0040497 Camellia sinensis var. sinensis HOM05D007293 ORTHO05D009143 2.8e-12 75.5 108 48.1
Dinv35058 Davidia involucrata HOM05D007293 ORTHO05D009143 4.7e-12 74.7 111 48.6
QL03p061237 Quercus lobata HOM05D007293 ORTHO05D009143 4.7e-12 74.7 111 52.3
A07p31100 Brassica napus HOM05D007293 ORTHO05D009143 1.4e-11 73.2 101 53.5
BraA07t30744Z Brassica rapa HOM05D007293 ORTHO05D009143 1.4e-11 73.2 101 53.5
AUR62005378 Chenopodium quinoa HOM05D007293 ORTHO05D009143 1.4e-11 73.2 102 52.9
Migut.H00123 Erythranthe guttata HOM05D007293 ORTHO05D009143 1.4e-11 73.2 107 51.4
Hund05995 Selenicereus undatus HOM05D007293 ORTHO05D009143 1.4e-11 73.2 113 50.4
arahy.Tifrunner.gnm1.ann1.HDCN36 Arachis hypogaea HOM05D007293 ORTHO05D009143 3.1e-11 72.0 106 52.8
AUR62014041 Chenopodium quinoa HOM05D007293 ORTHO05D009143 3.1e-11 72.0 105 52.4
TAR622G0242 Trochodendron aralioides HOM05D007293 ORTHO05D009143 3.1e-11 72.0 107 48.6
Ca_13998_v3 Cicer arietinum L. HOM05D007293 ORTHO05D009143 4.0e-11 71.6 104 47.1
VMungo1215G2593 Vigna mungo HOM05D007293 ORTHO05D009143 6.8e-11 70.9 102 50.0
Sc04g0009130 Simmondsia chinensis HOM05D007293 ORTHO05D009143 8.9e-11 70.5 103 47.6
CDE06G2495 Ceratophyllum demersum HOM05D007293 ORTHO05D009143 1.2e-10 70.1 60 66.7
MSTRG.24016 Avicennia marina HOM05D007293 ORTHO05D009143 3.4e-10 68.6 107 49.5
HanXRQChr08g0220621 Helianthus annuus HOM05D007293 ORTHO05D009143 7.6e-10 67.4 49 71.4
BcaB07g33183 Brassica carinata HOM05D027076 ORTHO05D027107 9.9e-10 67.0 84 52.4
CDE04G1122 Ceratophyllum demersum HOM05D007293 ORTHO05D009143 1.3e-09 66.6 49 71.4
DCAR_011205 Daucus carota HOM05D007293 ORTHO05D009143 2.2e-09 65.9 112 46.4
Lsat_1_v5_gn_4_182280 Lactuca sativa HOM05D007293 ORTHO05D009143 2.2e-09 65.9 108 49.1
Nn3g16892 Nelumbo nucifera HOM05D007293 ORTHO05D009143 2.9e-09 65.5 53 64.2
vmacro05819 Vaccinium macrocarpon HOM05D007293 ORTHO05D009143 8.4e-09 63.9 105 46.7
Oeu062917.1 Olea europaea HOM05D007293 ORTHO05D009143 1.1e-08 63.5 101 48.5
Aqoxy3G02974 Aquilegia oxysepala HOM05D007293 ORTHO05D009143 1.9e-08 62.8 111 47.7
SalBow1G2453 Salvia bowleyana HOM05D005882 ORTHO05D009143 1.9e-08 62.8 98 50.0
Cc07_g02290 Coffea canephora HOM05D007293 ORTHO05D009143 2.4e-08 62.4 103 47.6
Rhsim10G0022800 Rhododendron simsii HOM05D007293 ORTHO05D009143 4.1e-08 61.6 106 48.1
HPP92_019952 Vanilla planifolia HOM05D007293 ORTHO05D009143 1.2e-07 60.1 106 42.5
Os01g0738000 Oryza sativa ssp. japonica HOM05D007293 ORTHO05D009143 2.1e-07 59.3 106 46.2
CSS0015603 Camellia sinensis var. sinensis HOM05D007293 ORTHO05D009143 4.6e-07 58.2 106 41.5
Manes.16G071301 Manihot esculenta HOM05D007491 ORTHO05D009489 4.6e-07 58.2 78 46.2
Hma1.2p1_0802F.1_g220360 Hydrangea macrophylla HOM05D007293 ORTHO05D009143 1.0e-06 57.0 106 47.2
Zm00001eb153880 Zea mays HOM05D007293 ORTHO05D009143 1.0e-06 57.0 89 44.9
PSO063G5020 Papaver somniferum HOM05D007293 ORTHO05D009143 2.3e-06 55.8 100 46.0
Gorai.010G108700 Gossypium raimondii HOM05D007491 ORTHO05D009489 5.1e-06 54.7 102 37.3
Cc06_g09900 Coffea canephora HOM05D007491 ORTHO05D009489 6.6e-06 54.3 100 44.0
COL.COLO4_18682 Corchorus olitorius HOM05D007491 ORTHO05D009489 6.6e-06 54.3 76 40.8
RcHm_v2.0_Chr2g0090011 Rosa chinensis HOM05D007491 ORTHO05D009489 6.6e-06 54.3 53 52.8
ECA234G1405 Erigeron canadensis HOM05D007491 ORTHO05D009489 8.6e-06 53.9 81 42.0
Eucgr.C03814 Eucalyptus grandis HOM05D007491 ORTHO05D009489 8.6e-06 53.9 88 43.2
Lalb_Chr16g0388121 Lupinus albus HOM05D007491 ORTHO05D009489 8.6e-06 53.9 65 49.2


User provided reference genes

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