Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR117G0001 Punica granatum HOM05D004979 ORTHO05D006190 0.0e+00 1088.9 532 100.0
PGR004G0062 Punica granatum HOM05D004979 ORTHO05D006190 0.0e+00 1078.2 532 98.5
Eucgr.I02672 Eucalyptus grandis HOM05D004979 ORTHO05D006190 1.6e-249 865.9 530 75.8
QL03p011287 Quercus lobata HOM05D004979 ORTHO05D006190 2.2e-243 845.5 520 76.2
Atru.chr12.1512 Acer truncatum HOM05D004979 ORTHO05D006190 1.1e-242 843.2 529 75.2
FAN01G0279 Fragaria x ananassa HOM05D004979 ORTHO05D006190 2.1e-241 839.0 516 75.6
CSS0020926 Camellia sinensis var. sinensis HOM05D004979 ORTHO05D006190 6.1e-241 837.4 520 75.0
Cc02_g36100 Coffea canephora HOM05D004979 ORTHO05D006190 7.9e-241 837.0 518 73.7
RcHm_v2.0_Chr1g0332651 Rosa chinensis HOM05D004979 ORTHO05D006190 7.9e-241 837.0 521 75.4
CSS0020951 Camellia sinensis var. sinensis HOM05D004979 ORTHO05D006190 1.3e-240 836.3 520 75.0
Cc02_g36050 Coffea canephora HOM05D004979 ORTHO05D006190 3.9e-240 834.7 518 73.6
Manes.08G106500 Manihot esculenta HOM05D004979 ORTHO05D006190 5.1e-240 834.3 518 74.5
Potri.013G000600 Populus trichocarpa HOM05D004979 ORTHO05D006190 2.5e-239 832.0 518 74.1
CiPaw.01G000500 Carya illinoinensis HOM05D004979 ORTHO05D006190 3.3e-239 831.6 528 74.4
Actinidia22849 Actinidia chinensis HOM05D004979 ORTHO05D006190 1.6e-238 829.3 519 75.0
Migut.B00894 Erythranthe guttata HOM05D004979 ORTHO05D006190 1.1e-237 826.6 517 73.7
FAN06G2997 Fragaria x ananassa HOM05D004979 ORTHO05D006190 1.4e-237 826.2 538 72.5
Oeu061912.1 Olea europaea HOM05D004979 ORTHO05D006190 5.3e-237 824.3 518 72.6
Ciclev10028175m.g Citrus clementina HOM05D004979 ORTHO05D006190 9.0e-237 823.5 522 73.8
Lalb_Chr04g0254641 Lupinus albus HOM05D004979 ORTHO05D006190 2.0e-236 822.4 526 72.2
MD08G1246100 Malus domestica HOM05D004979 ORTHO05D006190 2.0e-236 822.4 517 74.1
TPR.G18815 Trifolium pratense HOM05D004979 ORTHO05D006190 4.5e-236 821.2 526 72.6
Medtr1g110490 Medicago truncatula HOM05D004979 ORTHO05D006190 7.7e-236 820.5 529 71.6
Sed0004859 Sechium edule HOM05D004979 ORTHO05D006190 1.7e-235 819.3 526 71.5
MSTRG.16439 Avicennia marina HOM05D004979 ORTHO05D006190 2.2e-235 818.9 518 72.8
Psat6g226240 Pisum sativum HOM05D004979 ORTHO05D006190 2.2e-235 818.9 518 74.3
TPR.G33173 Trifolium pratense HOM05D004979 ORTHO05D006190 2.2e-235 818.9 526 72.1
TWI60G1029 Tripterygium wilfordii HOM05D004979 ORTHO05D006190 2.2e-235 818.9 516 72.9
CANSAT56G2810 Cannabis sativa HOM05D004979 ORTHO05D006190 5.0e-235 817.8 516 73.8
MD15G1441300 Malus domestica HOM05D004979 ORTHO05D006190 4.2e-234 814.7 517 73.7
Sabra13G0000500 Salix brachista HOM05D004979 ORTHO05D006190 1.2e-233 813.1 543 70.7
EL10Ac8g20414 Beta vulgaris HOM05D004979 ORTHO05D006190 2.1e-233 812.4 518 72.0
arahy.Tifrunner.gnm1.ann1.4I4LKP Arachis hypogaea HOM05D004979 ORTHO05D006190 1.4e-232 809.7 519 72.8
MELO3C019579.2 Cucumis melo HOM05D004979 ORTHO05D006190 3.9e-232 808.1 525 71.4
CsaV3_6G013140 Cucumis sativus L. HOM05D004979 ORTHO05D006190 9.7e-231 803.5 525 71.4
CARHR054720 Cardamine hirsuta HOM05D004979 ORTHO05D006190 1.3e-230 803.1 516 71.1
Glyma.20G116900 Glycine max HOM05D004979 ORTHO05D006190 2.2e-230 802.4 531 70.6
Glyma.10G273100 Glycine max HOM05D004979 ORTHO05D006190 2.8e-230 802.0 519 71.9
AL1G67180 Arabidopsis lyrata HOM05D004979 ORTHO05D006190 3.7e-230 801.6 528 69.3
Thecc.05G331000 Theobroma cacao HOM05D004979 ORTHO05D006190 4.1e-229 798.1 517 71.8
VMungo0720G1588 Vigna mungo HOM05D004979 ORTHO05D006190 6.9e-229 797.3 530 69.8
Lj5g0020513 Lotus japonicus HOM05D004979 ORTHO05D006190 5.9e-228 794.3 516 72.1
Dinv24526 Davidia involucrata HOM05D004979 ORTHO05D006190 1.7e-227 792.7 518 71.4
CAN.G756.6 Capsicum annuum HOM05D004979 ORTHO05D006190 2.9e-227 792.0 513 71.3
Carub.0002s0703 Capsella rubella HOM05D004979 ORTHO05D006190 3.8e-227 791.6 526 69.2
ECA234G3247 Erigeron canadensis HOM05D004979 ORTHO05D006190 5.0e-227 791.2 497 72.4
Thhalv10023409m.g Eutrema salsugineum HOM05D004979 ORTHO05D006190 8.5e-227 790.4 516 70.0
AT1G57600 Arabidopsis thaliana HOM05D004979 ORTHO05D006190 3.2e-226 788.5 526 68.6
PGSC0003DMG400001886 Solanum tuberosum HOM05D004979 ORTHO05D006190 5.5e-226 787.7 513 70.4
arahy.Tifrunner.gnm1.ann1.Q958TZ Arachis hypogaea HOM05D004979 ORTHO05D006190 1.8e-224 782.7 577 65.9
Rhsim01G0213000 Rhododendron simsii HOM05D004979 ORTHO05D006190 1.8e-224 782.7 521 70.2
Solyc04g055190.4 Solanum lycopersicum HOM05D004979 ORTHO05D006190 3.0e-224 781.9 513 69.8
Phvul.007G028500 Phaseolus vulgaris HOM05D004979 ORTHO05D006190 3.9e-224 781.6 530 69.1
PSO357G0276 Papaver somniferum HOM05D004979 ORTHO05D006190 2.0e-223 779.2 527 68.1
Sp2g05910 Schrenkiella parvula HOM05D004979 ORTHO05D006190 2.0e-223 779.2 517 69.6
SpUn0028_0030 Schrenkiella parvula HOM05D004979 ORTHO05D006190 2.0e-223 779.2 517 69.6
PSO170G1924 Papaver somniferum HOM05D004979 ORTHO05D006190 7.4e-223 777.3 526 68.1
CAN.G1715.7 Capsicum annuum HOM05D004979 ORTHO05D006190 1.7e-222 776.2 513 70.2
THA.LOC104816839 Tarenaya hassleriana HOM05D004979 ORTHO05D006190 1.7e-222 776.2 514 70.4
BolC9t55284H Brassica oleracea HOM05D004979 ORTHO05D006190 6.3e-222 774.2 517 69.6
BcaC04g22085 Brassica carinata HOM05D004979 ORTHO05D006190 3.1e-221 771.9 517 69.2
Hund05397 Selenicereus undatus HOM05D004979 ORTHO05D006190 3.1e-221 771.9 488 72.7
BcaB07g31145 Brassica carinata HOM05D004979 ORTHO05D006190 7.0e-221 770.8 517 68.9
Aqoxy1G02435 Aquilegia oxysepala HOM05D004979 ORTHO05D006190 2.0e-220 769.2 520 69.0
BraA09t37507Z Brassica rapa HOM05D004979 ORTHO05D006190 2.9e-219 765.4 517 68.5
Gohir.D13G003600 Gossypium hirsutum HOM05D004979 ORTHO05D006190 3.8e-219 765.0 533 67.9
Gohir.A13G003700 Gossypium hirsutum HOM05D004979 ORTHO05D006190 1.1e-218 763.5 518 69.1
Gorai.013G003500 Gossypium raimondii HOM05D004979 ORTHO05D006190 5.5e-218 761.1 534 68.0
C09p23650 Brassica napus HOM05D004979 ORTHO05D006190 3.6e-217 758.4 541 66.2
HanXRQChr11g0327151 Helianthus annuus HOM05D004979 ORTHO05D006190 1.5e-215 753.1 469 74.0
Nitab4.5_0000081g0190 Nicotiana tabacum HOM05D004979 ORTHO05D006190 4.4e-215 751.5 520 68.5
A09p18870 Brassica napus HOM05D004979 ORTHO05D006190 1.3e-214 750.0 542 65.3
Os05g0144000 Oryza sativa ssp. japonica HOM05D004979 ORTHO05D006190 2.4e-213 745.7 516 65.5
Lj4g0015757 Lotus japonicus HOM05D004979 ORTHO05D006190 4.1e-213 745.0 473 72.9
AUR62014845 Chenopodium quinoa HOM05D004979 ORTHO05D006190 2.0e-212 742.7 523 67.1
unitig_22.g6127 Utricularia gibba HOM05D004979 ORTHO05D006190 7.7e-212 740.7 559 63.3
Zm00001eb108680 Zea mays HOM05D004979 ORTHO05D006190 1.2e-209 733.4 518 64.5
Duzib114G0072 Durio zibethinus HOM05D004979 ORTHO05D006190 4.7e-209 731.5 513 69.6
Aa31LG2G11270 Aethionema arabicum HOM05D004979 ORTHO05D006190 1.5e-207 726.5 521 66.2
Haze_12430 Corylus avellana HOM05D004979 ORTHO05D006190 3.4e-207 725.3 593 62.1
SGA_v2.0_scaffold279G46769 Striga asiatica HOM05D004979 ORTHO05D006190 7.0e-205 717.6 522 66.7
Peaxi162Scf00212g00515 Petunia axillaris HOM05D004979 ORTHO05D006190 6.1e-201 704.5 515 66.0
vmacro19800 Vaccinium macrocarpon HOM05D004979 ORTHO05D006190 8.0e-201 704.1 696 52.4
FAN23G0202 Fragaria x ananassa HOM05D004979 ORTHO05D006190 8.3e-198 694.1 519 65.3
ATR0730G180 Amborella trichopoda HOM05D004979 ORTHO05D006190 3.1e-197 692.2 527 61.5
TAR636G2920 Trochodendron aralioides HOM05D004979 ORTHO05D006190 3.1e-197 692.2 439 73.6
Sc05g0004380 Simmondsia chinensis HOM05D004979 ORTHO05D006190 1.7e-195 686.4 435 71.7
FAN03G1290 Fragaria x ananassa HOM05D004979 ORTHO05D006190 1.6e-193 679.9 582 59.6
vmacro22232 Vaccinium macrocarpon HOM05D004979 ORTHO05D006190 2.1e-193 679.5 550 62.5
Prupe.1G583400 Prunus persica HOM05D004979 ORTHO05D006190 4.0e-192 675.2 402 76.9
SEGI_04903 Sequoiadendron giganteum HOM05D004979 ORTHO05D006190 1.3e-190 670.2 520 58.7
FvH4_7g05560 Fragaria vesca HOM05D004979 ORTHO05D006190 2.2e-190 669.5 395 76.7
Nitab4.5_0002303g0020 Nicotiana tabacum HOM05D004979 ORTHO05D006190 2.4e-189 666.0 520 61.9
Lsat_1_v5_gn_5_7121 Lactuca sativa HOM05D004979 ORTHO05D006190 9.2e-189 664.1 503 65.4
Lj9A238G55 Lonicera japonica HOM05D004979 ORTHO05D006190 1.5e-186 656.8 501 64.5
HPP92_023772 Vanilla planifolia HOM05D004979 ORTHO05D006190 2.4e-173 612.8 420 65.2
Nn7g38157 Nelumbo nucifera HOM05D004979 ORTHO05D006190 2.3e-168 596.3 492 60.0
GSVIVG01007211001 Vitis vinifera HOM05D004979 ORTHO05D006190 9.9e-167 590.9 362 75.7
Mapoly0050s0014 Marchantia polymorpha HOM05D004979 ORTHO05D006190 4.3e-162 575.5 523 52.2
Pp3c2_38270 Physcomitrium patens HOM05D004979 ORTHO05D006190 5.6e-162 575.1 532 53.0
FAN10G2429 Fragaria x ananassa HOM05D004979 ORTHO05D006190 1.3e-155 553.9 517 56.5
GSVIVG01006954001 Vitis vinifera HOM05D004979 ORTHO05D006190 1.4e-152 543.9 304 82.9
SalBow5G4822 Salvia bowleyana HOM05D004979 ORTHO05D006190 2.9e-150 536.2 332 75.0
SMO145G0201 Selaginella moellendorffii HOM05D004979 ORTHO05D006190 1.3e-147 527.3 504 53.0
DCAR_006591 Daucus carota HOM05D004979 ORTHO05D006190 1.5e-146 523.9 517 52.2
SalBow3G2171 Salvia bowleyana HOM05D004979 ORTHO05D006190 2.1e-137 493.4 350 68.3
CBR_g16989 Chara braunii HOM05D004979 ORTHO05D006190 1.8e-136 490.3 550 45.3
Lj5C315T9 Lonicera japonica HOM05D004979 ORTHO05D006190 5.5e-133 478.8 290 75.5
Rhsim04G0165200 Rhododendron simsii HOM05D004979 ORTHO05D006190 2.7e-132 476.5 357 64.4
AagrBONN_evm.TU.Sc2ySwM_344.2018 Anthoceros agrestis HOM05D004979 ORTHO05D006190 5.1e-131 472.2 435 51.7
GSVIVG01002014001 Vitis vinifera HOM05D004979 ORTHO05D006190 1.4e-128 464.2 251 83.7
AUR62017041 Chenopodium quinoa HOM05D004979 ORTHO05D006190 6.1e-124 448.7 339 63.7
COL.COLO4_28214 Corchorus olitorius HOM05D004979 ORTHO05D006190 2.8e-113 413.3 286 67.8
Ca_17455_v3 Cicer arietinum L. HOM05D004979 ORTHO05D006190 1.1e-112 411.4 231 81.0
Hma1.2p1_0759F.1_g213770 Hydrangea macrophylla HOM05D004979 ORTHO05D006190 5.3e-112 409.1 231 81.0
Hma1.2p1_0759F.1_g213813 Hydrangea macrophylla HOM05D004979 ORTHO05D006190 5.3e-112 409.1 231 81.0
Sopen04g025050 Solanum pennellii HOM05D004979 ORTHO05D006190 7.2e-109 398.7 229 77.7
Dinv22420 Davidia involucrata HOM05D004979 ORTHO05D006190 3.6e-84 316.6 526 37.8
GSVIVG01007210001 Vitis vinifera HOM05D004979 ORTHO05D006190 1.5e-82 311.2 205 70.7
GSVIVG01007430001 Vitis vinifera HOM05D004979 ORTHO05D006190 4.1e-80 303.1 205 69.8
Cpa.g.sc46.4 Carica papaya HOM05D004979 ORTHO05D006190 1.6e-79 301.2 168 79.8
Cre14.g617150 Chlamydomonas reinhardtii HOM05D004979 ORTHO05D006190 2.3e-70 270.8 541 33.6
Cfa022844 Carpinus fangiana HOM05D004979 ORTHO05D006190 8.6e-70 268.9 561 32.6
PRCOL_00000039 Prasinoderma coloniale HOM05D004979 ORTHO05D006190 8.6e-70 268.9 502 36.9
MCO11G558 Micromonas commoda HOM05D004979 ORTHO05D006190 8.0e-68 262.3 500 34.8
CAN.G1164.35 Capsicum annuum HOM05D004979 ORTHO05D006190 1.8e-67 261.2 169 71.0
Cpa.g.sc46.2 Carica papaya HOM05D004979 ORTHO05D006190 2.3e-67 260.8 240 57.1
HanXRQChr14g0439781 Helianthus annuus HOM05D004979 ORTHO05D006190 1.2e-60 238.4 196 59.2
Actinidia01657 Actinidia chinensis HOM05D004979 ORTHO05D006190 3.6e-60 236.9 354 43.2
SHI20228 Sapria himalayana HOM05D004979 ORTHO05D006190 3.6e-52 210.3 264 43.9
DCAR_032148 Daucus carota HOM05D004979 ORTHO05D006190 3.3e-45 187.2 336 35.1
ClCG03G002030 Citrullus lanatus HOM05D004979 ORTHO05D006190 7.3e-45 186.0 162 59.9
Lsat_1_v5_gn_8_74721 Lactuca sativa HOM05D004979 ORTHO05D006190 3.6e-36 157.1 85 78.8
GSVIVG01004371001 Vitis vinifera HOM05D004979 ORTHO05D006190 2.3e-30 137.9 103 68.0
Actinidia27722 Actinidia chinensis HOM05D004979 ORTHO05D006190 1.1e-29 135.6 193 43.0
QL03p011256 Quercus lobata HOM05D004979 ORTHO05D006190 2.5e-29 134.4 79 81.0
MBI07_g39750_MAGBIO Magnolia biondii HOM05D004979 ORTHO05D006190 2.4e-27 127.9 107 59.8
SHI32754 Sapria himalayana HOM05D001374 ORTHO05D004296 2.4e-27 127.9 120 50.8
Lsat_1_v5_gn_8_74741 Lactuca sativa HOM05D004979 ORTHO05D006190 3.1e-27 127.5 101 64.4
CDE04G1277 Ceratophyllum demersum HOM05D004979 ORTHO05D006190 9.0e-27 125.9 99 59.6
FAN19G1386 Fragaria x ananassa HOM05D004979 ORTHO05D006190 1.1e-21 109.0 142 43.0
Rhsim05G0125000 Rhododendron simsii HOM05D004979 ORTHO05D006190 4.2e-16 90.5 321 27.4
Aqoxy2G02599 Aquilegia oxysepala HOM05D004979 ORTHO05D006190 5.1e-14 83.6 41 82.9
SHI20227 Sapria himalayana HOM05D004979 ORTHO05D006190 7.6e-10 69.7 50 62.0
Sc05g0003730 Simmondsia chinensis HOM05D004979 ORTHO05D006190 6.5e-09 66.6 81 48.1
AagrBONN_evm.TU.Sc2ySwM_117.715 Anthoceros agrestis HOM05D004979 ORTHO05D006190 1.4e-08 65.5 96 39.6
Medtr3g085120 Medicago truncatula HOM05D002545 ORTHO05D002335 2.5e-08 64.7 121 36.4
CBR_g72775 Chara braunii HOM05D004979 ORTHO05D132771 4.2e-08 63.9 280 27.9
FAN19G1644 Fragaria x ananassa HOM05D004979 ORTHO05D006190 4.6e-07 60.5 122 34.4
FAN23G1107 Fragaria x ananassa HOM05D003102 ORTHO05D005239 6.1e-07 60.1 33 81.8


User provided reference genes

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