Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR111G0117 Punica granatum HOM05D004473 ORTHO05D005652 2.1e-283 978.4 500 100.0
Hma1.2p1_4210F.1_g338470 Hydrangea macrophylla HOM05D004473 ORTHO05D005652 2.8e-208 728.8 502 75.1
RcHm_v2.0_CPg0502521 Rosa chinensis HOM05D004473 ORTHO05D005652 4.5e-206 721.5 500 73.0
ScUNg0001290 Simmondsia chinensis HOM05D004473 ORTHO05D005652 2.5e-196 689.1 500 72.2
Atru.chr6.757 Acer truncatum HOM05D004473 ORTHO05D005652 3.6e-195 685.3 501 71.1
EL10As2g23210 Beta vulgaris HOM05D004473 ORTHO05D005652 8.9e-194 680.6 501 70.3
Eucgr.D01147 Eucalyptus grandis HOM05D004473 ORTHO05D005652 1.6e-190 669.8 419 80.4
Hund29659 Selenicereus undatus HOM05D004473 ORTHO05D005652 3.9e-189 665.2 503 70.2
Lj2P1239T154 Lonicera japonica HOM05D004473 ORTHO05D005652 1.5e-188 663.3 500 70.2
Medtr3g035685 Medicago truncatula HOM05D004473 ORTHO05D005652 2.5e-188 662.5 502 68.7
HanXRQChr00c0368g0574161 Helianthus annuus HOM05D004473 ORTHO05D005652 9.5e-188 660.6 502 70.1
HanXRQCPg0579741 Helianthus annuus HOM05D004473 ORTHO05D005652 9.5e-188 660.6 502 70.1
Potri.013G138201 Populus trichocarpa HOM05D004473 ORTHO05D005652 1.2e-187 660.2 504 69.2
Sopen01g008040 Solanum pennellii HOM05D004473 ORTHO05D005652 6.8e-186 654.4 505 69.1
Hund27810 Selenicereus undatus HOM05D004473 ORTHO05D005652 1.7e-184 649.8 505 68.9
Gohir.A04G039120 Gossypium hirsutum HOM05D004473 ORTHO05D005652 1.4e-183 646.7 454 75.6
DCAR_032465 Daucus carota HOM05D004473 ORTHO05D005652 2.4e-183 646.0 505 69.1
Sed0024057 Sechium edule HOM05D004473 ORTHO05D005652 2.4e-183 646.0 500 69.4
SalBow1G8010 Salvia bowleyana HOM05D004473 ORTHO05D005652 4.1e-183 645.2 503 66.8
Hund30056 Selenicereus undatus HOM05D004473 ORTHO05D005652 5.4e-183 644.8 505 68.9
Hund29400 Selenicereus undatus HOM05D004473 ORTHO05D005652 1.6e-182 643.3 505 68.7
CAN.G939.10 Capsicum annuum HOM05D004473 ORTHO05D005652 1.5e-180 636.7 505 68.9
Hund30352 Selenicereus undatus HOM05D004473 ORTHO05D005652 3.3e-180 635.6 503 68.0
C06p21390 Brassica napus HOM05D004473 ORTHO05D005652 1.9e-175 619.8 505 65.1
BraSC143t45676Z Brassica rapa HOM05D004473 ORTHO05D005652 3.2e-175 619.0 505 65.1
Medtr4g051280 Medicago truncatula HOM05D004473 ORTHO05D005652 1.2e-174 617.1 502 65.5
ATCG00040 Arabidopsis thaliana HOM05D004473 ORTHO05D005652 2.1e-174 616.3 505 65.0
Sed0017792 Sechium edule HOM05D004473 ORTHO05D005652 2.7e-174 615.9 500 67.4
Hund29000 Selenicereus undatus HOM05D004473 ORTHO05D005652 6.0e-174 614.8 503 66.4
BcaC05g28805 Brassica carinata HOM05D004473 ORTHO05D005652 1.3e-173 613.6 505 65.3
HanXRQChr00c0125g0571751 Helianthus annuus HOM05D004473 ORTHO05D005652 1.3e-173 613.6 503 66.4
Hund29926 Selenicereus undatus HOM05D004473 ORTHO05D005652 3.9e-173 612.1 503 66.0
Hund28272 Selenicereus undatus HOM05D004473 ORTHO05D005652 6.6e-173 611.3 505 65.7
Medtr7g021760 Medicago truncatula HOM05D004473 ORTHO05D005652 7.3e-172 607.8 502 66.7
Gohir.A04G039150 Gossypium hirsutum HOM05D004473 ORTHO05D005652 6.4e-168 594.7 424 74.3
TWI34G1450 Tripterygium wilfordii HOM05D004473 ORTHO05D005652 8.4e-168 594.3 437 71.2
Lalb_Chr07g0191541 Lupinus albus HOM05D004473 ORTHO05D005652 1.6e-166 590.1 504 64.7
PSO548G0076 Papaver somniferum HOM05D004473 ORTHO05D005652 1.7e-165 586.6 504 63.3
Hund10282 Selenicereus undatus HOM05D004473 ORTHO05D005652 5.3e-162 575.1 505 63.4
Solyc00g500048.1 Solanum lycopersicum HOM05D004473 ORTHO05D005652 3.2e-159 565.8 505 63.0
Solyc00g500131.1 Solanum lycopersicum HOM05D004473 ORTHO05D005652 3.2e-159 565.8 505 63.0
Solyc00g500201.1 Solanum lycopersicum HOM05D004473 ORTHO05D005652 3.2e-159 565.8 505 63.0
Solyc00g500295.1 Solanum lycopersicum HOM05D004473 ORTHO05D005652 3.2e-159 565.8 505 63.0
Solyc00g500330.1 Solanum lycopersicum HOM05D004473 ORTHO05D005652 3.2e-159 565.8 505 63.0
BraSC25t45889Z Brassica rapa HOM05D004473 ORTHO05D005652 1.0e-157 560.8 471 63.9
Lsat_1_v5_gn_7_76981 Lactuca sativa HOM05D004473 ORTHO05D005652 5.1e-157 558.5 439 69.9
LjContig00318g0021272 Lotus japonicus HOM05D004473 ORTHO05D005652 1.6e-155 553.5 502 61.6
Eucgr.D00924 Eucalyptus grandis HOM05D004473 ORTHO05D005652 2.8e-155 552.7 476 63.7
HanXRQChr11g0326581 Helianthus annuus HOM05D004473 ORTHO05D005652 3.4e-153 545.8 502 60.8
Hund29405 Selenicereus undatus HOM05D004473 ORTHO05D005652 1.6e-147 526.9 518 59.7
Medtr0002s0390 Medicago truncatula HOM05D004473 ORTHO05D005652 8.2e-147 524.6 506 56.7
Hund25918 Selenicereus undatus HOM05D004473 ORTHO05D005652 1.9e-140 503.4 402 67.7
LjContig00489g0020099 Lotus japonicus HOM05D004473 ORTHO05D005652 2.6e-137 493.0 507 56.0
Gohir.1Z050066 Gossypium hirsutum HOM05D004473 ORTHO05D005652 1.1e-127 461.1 502 56.6
BraSC151t45687Z Brassica rapa HOM05D004473 ORTHO05D005652 1.6e-126 457.2 394 61.4
Lj2P1238T61 Lonicera japonica HOM05D004473 ORTHO05D005652 9.7e-116 421.4 333 67.9
arahy.Tifrunner.gnm1.ann1.40BINF Arachis hypogaea HOM05D004473 ORTHO05D005652 4.5e-113 412.5 463 52.7
GSVIVG01022885001 Vitis vinifera HOM05D004473 ORTHO05D005652 1.0e-109 401.4 446 52.9
Gohir.1Z049403 Gossypium hirsutum HOM05D004473 ORTHO05D005652 2.2e-107 393.7 441 54.0
Gohir.A08G095662 Gossypium hirsutum HOM05D004473 ORTHO05D005652 2.2e-107 393.7 293 72.7
SGA_v2.0_scaffold479G52250 Striga asiatica HOM05D004473 ORTHO05D005652 3.8e-104 382.9 396 54.5
Hund11181 Selenicereus undatus HOM05D004473 ORTHO05D005652 6.3e-99 365.5 501 46.3
Peaxi162Scf00219g00048 Petunia axillaris HOM05D004473 ORTHO05D001250 3.1e-98 363.2 362 58.3
HanXRQChr00c0572g0575931 Helianthus annuus HOM05D004473 ORTHO05D005652 4.2e-95 352.8 336 58.3
CAN.G386.22 Capsicum annuum HOM05D004473 ORTHO05D005652 1.0e-93 348.2 300 63.0
Lsat_1_v5_gn_2_89740 Lactuca sativa HOM05D004473 ORTHO05D005652 4.0e-85 319.7 309 58.3
PGSC0003DMG400041047 Solanum tuberosum HOM05D004473 ORTHO05D005652 5.0e-80 302.8 227 69.2
Peaxi162Scf00211g00244 Petunia axillaris HOM05D004473 ORTHO05D005652 1.9e-79 300.8 278 61.2
arahy.Tifrunner.gnm1.ann1.3DS1LI Arachis hypogaea HOM05D004473 ORTHO05D005652 4.1e-74 283.1 263 61.2
arahy.Tifrunner.gnm1.ann1.SGP77C Arachis hypogaea HOM05D004473 ORTHO05D005652 4.1e-74 283.1 263 61.2
Hund10683 Selenicereus undatus HOM05D004473 ORTHO05D005652 3.6e-70 270.0 299 54.2
BolC2t10578H Brassica oleracea HOM05D004473 ORTHO05D005652 6.2e-70 269.2 207 67.6
BolSC37t60777H Brassica oleracea HOM05D004473 ORTHO05D005652 6.2e-70 269.2 207 67.6
BolSC45t60885H Brassica oleracea HOM05D004473 ORTHO05D005652 6.2e-70 269.2 207 67.6
BolSC45t60929H Brassica oleracea HOM05D004473 ORTHO05D005652 6.2e-70 269.2 207 67.6
BolSC46t60978H Brassica oleracea HOM05D004473 ORTHO05D005652 6.2e-70 269.2 207 67.6
Psat0s1330g0240 Pisum sativum HOM05D004473 ORTHO05D005652 1.9e-66 257.7 214 63.6
BcaB03g16404 Brassica carinata HOM05D004473 ORTHO05D005652 2.3e-64 250.8 219 62.6
Nn2g10392 Nelumbo nucifera HOM05D004473 ORTHO05D005652 1.5e-63 248.1 267 53.6
Gorai.002G165800 Gossypium raimondii HOM05D001387 ORTHO05D001250 2.5e-63 247.3 324 45.7
Nn4g24630 Nelumbo nucifera HOM05D004473 ORTHO05D005652 3.1e-61 240.4 183 67.2
Nitab4.5_0011099g0050 Nicotiana tabacum HOM05D004473 ORTHO05D005652 5.1e-56 223.0 164 71.3
Migut.D01408 Erythranthe guttata HOM05D004473 ORTHO05D005652 1.9e-55 221.1 303 45.9
CAN.G85.6 Capsicum annuum HOM05D004473 ORTHO05D005652 9.0e-53 212.2 153 73.2
HanXRQChr00c0126g0571831 Helianthus annuus HOM05D004473 ORTHO05D005652 3.5e-49 200.3 142 71.8
Oeu012780.1 Olea europaea HOM05D001387 ORTHO05D001250 1.0e-48 198.7 127 76.4
CAN.G100.39 Capsicum annuum HOM05D004473 ORTHO05D005652 3.0e-48 197.2 153 69.3
Gorai.001G044100 Gossypium raimondii HOM05D004473 ORTHO05D005652 3.9e-48 196.8 178 59.0
Gohir.A08G070362 Gossypium hirsutum HOM05D004473 ORTHO05D005652 5.6e-47 193.0 133 72.2
CAN.G1738.12 Capsicum annuum HOM05D004473 ORTHO05D005652 8.1e-46 189.1 138 72.5
Hund10684 Selenicereus undatus HOM05D004473 ORTHO05D005652 1.4e-45 188.3 142 70.4
HanXRQChr00c0524g0575451 Helianthus annuus HOM05D004473 ORTHO05D005652 4.0e-45 186.8 209 54.5
Peaxi162Scf00211g00223 Petunia axillaris HOM05D004473 ORTHO05D005652 3.4e-44 183.7 120 76.7
Thhalv10001851m.g Eutrema salsugineum HOM05D004473 ORTHO05D005652 4.5e-44 183.3 298 41.9
HanXRQChr16g0503961 Helianthus annuus HOM05D004473 ORTHO05D005652 1.7e-43 181.4 134 72.4
Solyc09g061390.1 Solanum lycopersicum HOM05D004473 ORTHO05D005652 2.2e-43 181.0 116 76.7
BolSC49t61206H Brassica oleracea HOM05D004473 ORTHO05D005652 4.9e-43 179.9 118 77.1
TPR.G10220 Trifolium pratense HOM05D004473 ORTHO05D005652 5.5e-42 176.4 136 65.4
Nitab4.5_0007979g0030 Nicotiana tabacum HOM05D001387 ORTHO05D001250 1.6e-41 174.9 460 33.5
Thhalv10028154m.g Eutrema salsugineum HOM05D004473 ORTHO05D005652 1.0e-40 172.2 126 72.2
Gorai.001G230600 Gossypium raimondii HOM05D004473 ORTHO05D005652 4.3e-39 166.8 132 65.9
MELO3C027413.2 Cucumis melo HOM05D004473 ORTHO05D005652 4.8e-38 163.3 143 64.3
arahy.Tifrunner.gnm1.ann1.EJ7WQI Arachis hypogaea HOM05D004473 ORTHO05D005652 5.3e-37 159.8 131 64.1
Nitab4.5_0001439g0120 Nicotiana tabacum HOM05D004473 ORTHO05D005652 1.4e-34 151.8 164 53.7
Nn1g08463 Nelumbo nucifera HOM05D004473 ORTHO05D005652 5.5e-34 149.8 108 69.4
HanXRQChr16g0503951 Helianthus annuus HOM05D004473 ORTHO05D005652 7.1e-34 149.4 165 53.9
BraSC59t46519Z Brassica rapa HOM05D004473 ORTHO05D005652 9.3e-34 149.1 139 59.7
HanXRQChr00c0165g0572181 Helianthus annuus HOM05D004473 ORTHO05D005652 1.6e-33 148.3 118 69.5
Medtr7g117940 Medicago truncatula HOM05D004473 ORTHO05D005652 4.6e-33 146.7 104 68.3
arahy.Tifrunner.gnm1.ann1.85ZYV6 Arachis hypogaea HOM05D004473 ORTHO05D005652 1.3e-32 145.2 157 54.1
CAN.G575.33 Capsicum annuum HOM05D004473 ORTHO05D000001 3.3e-31 140.6 118 62.7
Peaxi162Scf00219g00049 Petunia axillaris HOM05D004473 ORTHO05D005652 5.7e-31 139.8 96 69.8
Gorai.013G056700 Gossypium raimondii HOM05D004473 ORTHO05D005652 2.1e-30 137.9 119 61.3
TPR.G40775 Trifolium pratense HOM05D004473 ORTHO05D005652 2.1e-30 137.9 114 61.4
Duzib147G0859 Durio zibethinus HOM05D004473 ORTHO05D005696 6.3e-30 136.3 103 66.0
Medtr7g098060 Medicago truncatula HOM05D004473 ORTHO05D005652 1.4e-29 135.2 106 63.2
Gohir.A07G155811 Gossypium hirsutum HOM05D004473 ORTHO05D005652 6.9e-29 132.9 80 76.2
CAN.G219.14 Capsicum annuum HOM05D004473 ORTHO05D005652 4.2e-26 123.6 85 72.9
CAN.G156.6 Capsicum annuum HOM05D004473 ORTHO05D005652 2.7e-25 120.9 132 47.7
HanXRQChr00c0165g0572171 Helianthus annuus HOM05D004473 ORTHO05D005652 3.9e-24 117.1 91 69.2
Nn020s41490 Nelumbo nucifera HOM05D004473 ORTHO05D005652 2.5e-23 114.4 80 77.5
Gorai.005G171000 Gossypium raimondii HOM05D004473 ORTHO05D005652 7.4e-23 112.8 80 68.8
Thhalv10012215m.g Eutrema salsugineum HOM05D004473 ORTHO05D005652 9.0e-21 105.9 153 45.8
Atru.chr7.156 Acer truncatum HOM05D004473 ORTHO05D005652 4.5e-20 103.6 81 61.7
MD15G1438900 Malus domestica HOM05D004473 ORTHO05D005652 5.0e-19 100.1 65 75.4
Hund04106 Selenicereus undatus HOM05D004473 ORTHO05D005652 8.5e-19 99.4 157 43.3
Lalb_Chr13g0292931 Lupinus albus HOM05D004473 ORTHO05D005652 6.1e-17 93.2 82 58.5
CAN.G130.4 Capsicum annuum HOM05D004473 ORTHO05D005652 7.9e-17 92.8 74 60.8
Nn3g16148 Nelumbo nucifera HOM05D004473 ORTHO05D005652 1.4e-16 92.0 77 63.6
MELO3C000879.2 Cucumis melo HOM05D004473 ORTHO05D005652 8.8e-16 89.4 56 73.2
MELO3C027497.2 Cucumis melo HOM05D004473 ORTHO05D005652 8.8e-16 89.4 56 73.2
HanXRQChr00c0496g0575171 Helianthus annuus HOM05D004473 ORTHO05D005652 1.5e-15 88.6 82 56.1
SMO086G0023 Selaginella moellendorffii HOM05D004473 ORTHO05D005652 1.5e-15 88.6 384 27.1
Medtr2g089600 Medicago truncatula HOM05D004473 ORTHO05D005652 3.3e-15 87.4 60 65.0
GSVIVG01022429001 Vitis vinifera HOM05D004473 ORTHO05D005652 3.3e-15 87.4 115 42.6
Medtr2g089590 Medicago truncatula HOM05D004473 ORTHO05D005652 5.7e-15 86.7 89 60.7
Nn8g40470 Nelumbo nucifera HOM05D004473 ORTHO05D005652 5.7e-15 86.7 54 85.2
Gorai.003G179600 Gossypium raimondii HOM05D004473 ORTHO05D005652 9.7e-15 85.9 66 66.7
Manes.10G075803 Manihot esculenta HOM05D004473 ORTHO05D005652 3.4e-12 77.4 52 71.2
GSVIVG01020677001 Vitis vinifera HOM05D004473 ORTHO05D005652 5.9e-12 76.6 46 71.7
FAN24G2630 Fragaria x ananassa HOM05D004473 ORTHO05D005652 7.7e-12 76.3 82 53.7
TPR.G7920 Trifolium pratense HOM05D004473 ORTHO05D005652 1.0e-11 75.9 61 65.6
Os11g0517350 Oryza sativa ssp. japonica HOM05D004473 ORTHO05D005652 1.6e-09 68.6 62 54.8
TPR.G16230 Trifolium pratense HOM05D004473 ORTHO05D005652 2.1e-09 68.2 77 50.6
Migut.D01003 Erythranthe guttata HOM05D004473 ORTHO05D005652 7.9e-09 66.2 78 50.0
Oeu062869.1 Olea europaea HOM05D004473 ORTHO05D005652 3.0e-08 64.3 53 66.0
GSVIVG01001302001 Vitis vinifera HOM05D004473 ORTHO05D005652 3.9e-08 63.9 88 47.7
CSS0010292 Camellia sinensis var. sinensis HOM05D004473 ORTHO05D005652 5.1e-08 63.5 113 38.1
TPR.G40774 Trifolium pratense HOM05D004473 ORTHO05D005652 8.8e-08 62.8 42 81.0
BolSC29t60444H Brassica oleracea HOM05D004473 ORTHO05D005652 1.5e-07 62.0 39 69.2
AUR62037881 Chenopodium quinoa HOM05D001387 ORTHO05D001250 3.3e-07 60.8 42 61.9
Gorai.006G008300 Gossypium raimondii HOM05D004473 ORTHO05D005652 5.7e-07 60.1 95 43.2
Oeu051131.1 Olea europaea HOM05D000388 ORTHO05D004227 2.2e-06 58.2 44 70.5
BraSC58t46474Z Brassica rapa HOM05D004473 ORTHO05D005652 4.8e-06 57.0 48 52.1
Oeu020582.1 Olea europaea HOM05D004473 ORTHO05D005652 6.3e-06 56.6 47 63.8
Oeu022565.1 Olea europaea HOM05D004473 ORTHO05D005652 6.3e-06 56.6 36 75.0


User provided reference genes

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