Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR111G0111 Punica granatum HOM05D007755 ORTHO05D009866 3.2e-24 114.4 63 100.0
LjContig00489g0017505 Lotus japonicus HOM05D007755 ORTHO05D009866 7.1e-24 113.2 63 96.8
Potri.013G142548 Populus trichocarpa HOM05D007755 ORTHO05D009866 7.1e-24 113.2 63 98.4
AL2G20820 Arabidopsis lyrata HOM05D007755 ORTHO05D009866 1.2e-23 112.5 63 98.4
AL2G21330 Arabidopsis lyrata HOM05D007755 ORTHO05D009866 1.2e-23 112.5 63 98.4
ATCG00300 Arabidopsis thaliana HOM05D007755 ORTHO05D009866 1.2e-23 112.5 63 98.4
A06p23320 Brassica napus HOM05D007755 ORTHO05D009866 1.2e-23 112.5 63 98.4
BNapus_Darmor_BZH_scaffold_287p00020 Brassica napus HOM05D007755 ORTHO05D009866 1.2e-23 112.5 63 98.4
C09p40450 Brassica napus HOM05D007755 ORTHO05D009866 1.2e-23 112.5 63 98.4
BolC7t41728H Brassica oleracea HOM05D007755 ORTHO05D009866 1.2e-23 112.5 63 98.4
BolC9t56908H Brassica oleracea HOM05D007755 ORTHO05D009866 1.2e-23 112.5 63 98.4
BolSC29t60454H Brassica oleracea HOM05D007755 ORTHO05D009866 1.2e-23 112.5 63 98.4
BolSC45t60871H Brassica oleracea HOM05D007755 ORTHO05D009866 1.2e-23 112.5 63 98.4
BolSC47t61109H Brassica oleracea HOM05D007755 ORTHO05D009866 1.2e-23 112.5 63 98.4
BolSC47t61113H Brassica oleracea HOM05D007755 ORTHO05D009866 1.2e-23 112.5 63 98.4
BraA06t25434Z Brassica rapa HOM05D007755 ORTHO05D009866 1.2e-23 112.5 63 98.4
BraSC140t45582Z Brassica rapa HOM05D007755 ORTHO05D009866 1.2e-23 112.5 63 98.4
CARHR281980 Cardamine hirsuta HOM05D007755 ORTHO05D009866 1.2e-23 112.5 63 98.4
Migut.J01358 Erythranthe guttata HOM05D007755 ORTHO05D009866 1.6e-23 112.1 63 96.8
HanXRQChr00c0272g0573011 Helianthus annuus HOM05D007755 ORTHO05D009866 1.6e-23 112.1 63 96.8
HanXRQChr00c0300g0573261 Helianthus annuus HOM05D007755 ORTHO05D009866 1.6e-23 112.1 63 96.8
HanXRQChr00c0313g0573411 Helianthus annuus HOM05D007755 ORTHO05D009866 1.6e-23 112.1 63 96.8
HanXRQChr00c0920g0577881 Helianthus annuus HOM05D007755 ORTHO05D009866 1.6e-23 112.1 63 96.8
HanXRQChr02g0041661 Helianthus annuus HOM05D007755 ORTHO05D009866 1.6e-23 112.1 63 96.8
HanXRQChr02g0044811 Helianthus annuus HOM05D007755 ORTHO05D009866 1.6e-23 112.1 63 96.8
HanXRQChr04g0099331 Helianthus annuus HOM05D007755 ORTHO05D009866 1.6e-23 112.1 63 96.8
HanXRQChr07g0201081 Helianthus annuus HOM05D007755 ORTHO05D009866 1.6e-23 112.1 63 96.8
HanXRQChr08g0210241 Helianthus annuus HOM05D007755 ORTHO05D009866 1.6e-23 112.1 63 96.8
HanXRQChr10g0282461 Helianthus annuus HOM05D007755 ORTHO05D009866 1.6e-23 112.1 63 96.8
HanXRQChr11g0326681 Helianthus annuus HOM05D007755 ORTHO05D009866 1.6e-23 112.1 63 96.8
HanXRQCPg0579881 Helianthus annuus HOM05D007755 ORTHO05D009866 1.6e-23 112.1 63 96.8
LjContig00318g0015447 Lotus japonicus HOM05D007755 ORTHO05D009866 1.6e-23 112.1 63 98.4
Gohir.D06G164048 Gossypium hirsutum HOM05D007755 ORTHO05D009866 2.1e-23 111.7 63 96.8
Gohir.D08G128420 Gossypium hirsutum HOM05D007755 ORTHO05D009866 2.1e-23 111.7 63 96.8
Nn020s41507 Nelumbo nucifera HOM05D007755 ORTHO05D009866 2.1e-23 111.7 63 96.8
Nn082s42679 Nelumbo nucifera HOM05D007755 ORTHO05D009866 2.1e-23 111.7 63 96.8
Nn287s46147 Nelumbo nucifera HOM05D007755 ORTHO05D009866 2.1e-23 111.7 63 96.8
Nn3g19094 Nelumbo nucifera HOM05D007755 ORTHO05D009866 2.1e-23 111.7 63 96.8
CAN.G679.8 Capsicum annuum HOM05D007755 ORTHO05D009866 2.7e-23 111.3 63 96.8
Medtr8g056780 Medicago truncatula HOM05D007755 ORTHO05D009866 2.7e-23 111.3 63 96.8
Sed0002727 Sechium edule HOM05D007755 ORTHO05D009866 2.7e-23 111.3 63 96.8
Sed0008331 Sechium edule HOM05D007755 ORTHO05D009866 2.7e-23 111.3 63 96.8
Sed0012017 Sechium edule HOM05D007755 ORTHO05D009866 2.7e-23 111.3 63 96.8
Sed0014140 Sechium edule HOM05D007755 ORTHO05D009866 2.7e-23 111.3 63 96.8
Sed0021343 Sechium edule HOM05D007755 ORTHO05D009866 2.7e-23 111.3 63 96.8
Sed0024615 Sechium edule HOM05D007755 ORTHO05D009866 2.7e-23 111.3 63 96.8
Solyc01g102770.1 Solanum lycopersicum HOM05D007755 ORTHO05D009866 2.7e-23 111.3 63 96.8
DCAR_032481 Daucus carota HOM05D007755 ORTHO05D009866 3.5e-23 110.9 63 95.2
HanXRQChr05g0151401 Helianthus annuus HOM05D007755 ORTHO05D009866 4.6e-23 110.5 63 95.2
Gohir.1Z049880 Gossypium hirsutum HOM05D007755 ORTHO05D009866 1.0e-22 109.4 63 93.7
Gohir.A05G086100 Gossypium hirsutum HOM05D007755 ORTHO05D009866 1.0e-22 109.4 63 95.2
PSO548G0042 Papaver somniferum HOM05D007755 ORTHO05D009866 1.3e-22 109.0 63 96.8
RcHm_v2.0_Chr3g0491831 Rosa chinensis HOM05D007755 ORTHO05D009866 1.3e-22 109.0 63 95.2
RcHm_v2.0_CPg0502301 Rosa chinensis HOM05D007755 ORTHO05D009866 1.3e-22 109.0 63 95.2
Migut.D01347 Erythranthe guttata HOM05D007755 ORTHO05D009866 1.8e-22 108.6 59 100.0
Gohir.A12G076900 Gossypium hirsutum HOM05D007755 ORTHO05D009866 2.3e-22 108.2 63 95.2
Gohir.A12G121501 Gossypium hirsutum HOM05D007755 ORTHO05D009866 3.0e-22 107.8 63 93.7
Prupe.2G104500 Prunus persica HOM05D007755 ORTHO05D009866 3.9e-22 107.5 63 93.7
BraSC179t45795Z Brassica rapa HOM05D007755 ORTHO05D009866 5.1e-22 107.1 63 95.2
Solyc11g050770.1 Solanum lycopersicum HOM05D007755 ORTHO05D009866 6.7e-22 106.7 62 91.9
HanXRQChr11g0330571 Helianthus annuus HOM05D007755 ORTHO05D009866 1.1e-21 105.9 63 93.7
Glyma.01G095900 Glycine max HOM05D007755 ORTHO05D009866 1.5e-21 105.5 63 92.1
MD11G1068400 Malus domestica HOM05D007755 ORTHO05D009866 4.3e-21 104.0 63 90.5
Gohir.A01G164800 Gossypium hirsutum HOM05D007755 ORTHO05D009866 7.4e-21 103.2 63 90.5
CAN.G201.1 Capsicum annuum HOM05D007755 ORTHO05D009866 1.3e-20 102.4 63 90.5
Phvul.010G069000 Phaseolus vulgaris HOM05D007755 ORTHO05D009866 2.1e-20 101.7 63 85.7
Solyc10g017950.2 Solanum lycopersicum HOM05D007755 ORTHO05D009866 3.7e-20 100.9 62 90.3
BolSC44t60853H Brassica oleracea HOM05D007755 ORTHO05D009866 4.8e-20 100.5 59 91.5
BolSC49t61194H Brassica oleracea HOM05D007755 ORTHO05D009866 4.8e-20 100.5 59 91.5
Migut.M00584 Erythranthe guttata HOM05D007755 ORTHO05D009866 6.3e-20 100.1 56 94.6
Gorai.003G070800 Gossypium raimondii HOM05D007755 ORTHO05D009866 1.8e-19 98.6 63 84.1
Thhalv10011069m.g Eutrema salsugineum HOM05D007755 ORTHO05D009866 5.3e-19 97.1 54 94.4
Glyma.08G363500 Glycine max HOM05D007755 ORTHO05D009866 9.0e-19 96.3 63 84.1
Hma1.2p1_0149F.1_g066480 Hydrangea macrophylla HOM05D007755 ORTHO05D009866 1.5e-18 95.5 63 85.7
Eucgr.B02051 Eucalyptus grandis HOM05D007755 ORTHO05D009866 2.0e-18 95.1 63 84.1
EL10As15g24140 Beta vulgaris HOM05D000890 ORTHO05D009866 3.4e-18 94.4 59 89.8
Os12g0504050 Oryza sativa ssp. japonica HOM05D007755 ORTHO05D009866 1.7e-17 92.0 63 82.5
Nn2g13213 Nelumbo nucifera HOM05D007755 ORTHO05D009866 2.1e-15 85.1 45 95.6
BraSC143t45685Z Brassica rapa HOM05D007755 ORTHO05D009866 1.8e-14 82.0 47 93.6
Lsat_1_v5_gn_8_5961 Lactuca sativa HOM05D007755 ORTHO05D009866 6.7e-14 80.1 62 77.4
CsaV3_5G013710 Cucumis sativus L. HOM05D007755 ORTHO05D009866 7.4e-13 76.6 43 95.3
CSS0044859 Camellia sinensis var. sinensis HOM05D007755 ORTHO05D009866 1.8e-11 72.0 45 84.4
SMO086G0034 Selaginella moellendorffii HOM05D007755 ORTHO05D009866 9.1e-11 69.7 61 68.9
AL2G25590 Arabidopsis lyrata HOM05D007755 ORTHO05D009866 3.2e-08 61.2 52 71.2
MD00G1208700 Malus domestica HOM05D007755 ORTHO05D009866 2.1e-07 58.5 49 71.4
CSS0030059 Camellia sinensis var. sinensis HOM05D007755 ORTHO05D009866 7.9e-07 56.6 63 61.9


User provided reference genes

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