Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR111G0107 Punica granatum HOM05D000533 ORTHO05D006151 9.5e-84 313.5 166 100.0
HanXRQChr00c0336g0573681 Helianthus annuus HOM05D000533 ORTHO05D006151 9.8e-81 303.5 165 97.0
HanXRQChr02g0059731 Helianthus annuus HOM05D000533 ORTHO05D006151 9.8e-81 303.5 165 97.0
HanXRQChr15g0465421 Helianthus annuus HOM05D000533 ORTHO05D001069 9.8e-81 303.5 165 97.0
HanXRQChr15g0465471 Helianthus annuus HOM05D000533 ORTHO05D001069 9.8e-81 303.5 165 97.0
HanXRQChr17g0569711 Helianthus annuus HOM05D000533 ORTHO05D001069 9.8e-81 303.5 165 97.0
HanXRQChr17g0569761 Helianthus annuus HOM05D000533 ORTHO05D001069 9.8e-81 303.5 165 97.0
HanXRQCPg0580331 Helianthus annuus HOM05D000533 ORTHO05D001069 9.8e-81 303.5 165 97.0
C09p24660 Brassica napus HOM05D000533 ORTHO05D006151 2.9e-80 302.0 165 95.8
C09p40170 Brassica napus HOM05D000533 ORTHO05D006151 2.9e-80 302.0 165 95.8
BolSC29t60508H Brassica oleracea HOM05D000533 ORTHO05D006151 2.9e-80 302.0 165 95.8
BolSC35t60690H Brassica oleracea HOM05D000533 ORTHO05D006151 2.9e-80 302.0 165 95.8
BolSC35t60706H Brassica oleracea HOM05D000533 ORTHO05D006151 2.9e-80 302.0 165 95.8
BraSC143t45658Z Brassica rapa HOM05D000533 ORTHO05D006151 2.9e-80 302.0 165 95.8
BraSC59t46553Z Brassica rapa HOM05D000533 ORTHO05D006151 2.9e-80 302.0 165 95.8
BolC2t10613H Brassica oleracea HOM05D000533 ORTHO05D006151 8.3e-80 300.4 165 95.2
BolSC46t60956H Brassica oleracea HOM05D000533 ORTHO05D006151 1.1e-79 300.1 165 95.2
RcHm_v2.0_CPg0502751 Rosa chinensis HOM05D000533 ORTHO05D006151 1.1e-79 300.1 165 95.8
AL9U11958 Arabidopsis lyrata HOM05D000533 ORTHO05D006151 1.4e-79 299.7 165 95.2
ATCG01090 Arabidopsis thaliana HOM05D000533 ORTHO05D006151 1.4e-79 299.7 165 95.2
TAR625G0707 Trochodendron aralioides HOM05D000533 ORTHO05D006151 3.2e-79 298.5 165 96.4
Peaxi162Scf00030g02119 Petunia axillaris HOM05D000533 ORTHO05D006151 4.1e-79 298.1 165 95.2
Peaxi162Scf00269g01411 Petunia axillaris HOM05D000533 ORTHO05D006151 4.1e-79 298.1 165 95.2
RcHm_v2.0_Chr5g0017191 Rosa chinensis HOM05D000533 ORTHO05D006151 5.4e-79 297.7 165 95.2
BolSC47t61063H Brassica oleracea HOM05D000533 ORTHO05D006151 7.0e-79 297.4 166 94.6
PSO548G0083 Papaver somniferum HOM05D000533 ORTHO05D006151 3.5e-78 295.0 165 94.5
Ciclev10013971m.g Citrus clementina HOM05D000533 ORTHO05D006151 2.3e-77 292.4 165 93.3
Ciclev10013973m.g Citrus clementina HOM05D000533 ORTHO05D006151 2.3e-77 292.4 165 93.3
Nn031s41615 Nelumbo nucifera HOM05D000533 ORTHO05D006151 3.0e-77 292.0 165 92.7
Nn064s42208 Nelumbo nucifera HOM05D000533 ORTHO05D006151 3.0e-77 292.0 165 92.7
CAN.G1045.11 Capsicum annuum HOM05D000533 ORTHO05D006151 8.6e-77 290.4 164 93.9
CAN.G1298.19 Capsicum annuum HOM05D000533 ORTHO05D006151 8.6e-77 290.4 164 93.9
CAN.G1526.2 Capsicum annuum HOM05D000533 ORTHO05D006151 8.6e-77 290.4 164 93.9
CAN.G278.1 Capsicum annuum HOM05D000533 ORTHO05D006151 8.6e-77 290.4 164 93.9
CAN.G413.10 Capsicum annuum HOM05D000533 ORTHO05D006151 8.6e-77 290.4 164 93.9
CAN.G939.4 Capsicum annuum HOM05D000533 ORTHO05D006151 8.6e-77 290.4 164 93.9
HanXRQChr09g0258491 Helianthus annuus HOM05D000533 ORTHO05D006151 1.1e-76 290.0 157 97.5
Migut.D01250 Erythranthe guttata HOM05D000533 ORTHO05D006151 1.5e-76 289.7 166 93.4
Lalb_Chr07g0191791 Lupinus albus HOM05D000533 ORTHO05D006151 4.3e-76 288.1 158 96.8
C02p28830 Brassica napus HOM05D000533 ORTHO05D006151 7.3e-76 287.3 165 92.1
Solyc03g013615.1 Solanum lycopersicum HOM05D000533 ORTHO05D006151 1.2e-75 286.6 164 84.1
LjContig00318g0022534 Lotus japonicus HOM05D000533 ORTHO05D006151 1.6e-75 286.2 158 96.8
LjContig00319g0019672 Lotus japonicus HOM05D000533 ORTHO05D006151 1.6e-75 286.2 158 96.8
Medtr3g450170 Medicago truncatula HOM05D000533 ORTHO05D006151 1.6e-75 286.2 158 96.2
Medtr4g006100 Medicago truncatula HOM05D000533 ORTHO05D001069 1.6e-75 286.2 158 96.2
Medtr6g042210 Medicago truncatula HOM05D000533 ORTHO05D006151 1.6e-75 286.2 158 96.2
Medtr7g021700 Medicago truncatula HOM05D000533 ORTHO05D006151 1.6e-75 286.2 158 96.2
DCAR_018912 Daucus carota HOM05D000533 ORTHO05D006151 2.8e-75 285.4 162 93.2
DCAR_032540 Daucus carota HOM05D000533 ORTHO05D006151 2.8e-75 285.4 162 93.2
Psat0s6989g0200 Pisum sativum HOM05D000533 ORTHO05D006151 2.8e-75 285.4 158 94.9
Psat6g140600 Pisum sativum HOM05D000533 ORTHO05D006151 2.8e-75 285.4 158 94.9
Psat6g140640 Pisum sativum HOM05D000533 ORTHO05D006151 2.8e-75 285.4 158 94.9
Psat3g095000 Pisum sativum HOM05D000533 ORTHO05D006151 1.4e-74 283.1 158 94.3
BolSC45t60907H Brassica oleracea HOM05D000533 ORTHO05D006151 4.0e-74 281.6 158 94.3
Gohir.A08G123600 Gossypium hirsutum HOM05D000533 ORTHO05D006151 1.2e-73 280.0 165 83.0
SalBow1G0791 Salvia bowleyana HOM05D000533 ORTHO05D006151 4.9e-72 274.6 165 88.5
Medtr0002s0160 Medicago truncatula HOM05D000533 ORTHO05D006151 1.4e-71 273.1 163 86.5
Psat4g190120 Pisum sativum HOM05D000533 ORTHO05D006151 5.4e-71 271.2 158 91.1
Lj2P1238T111 Lonicera japonica HOM05D000533 ORTHO05D006151 2.3e-69 265.8 166 86.7
Lju5009P0T51 Lonicera japonica HOM05D000533 ORTHO05D006151 2.3e-69 265.8 166 86.7
QL93p0141_0017 Quercus lobata HOM05D000533 ORTHO05D006151 8.6e-69 263.8 165 86.7
HanXRQChr00c0718g0576981 Helianthus annuus HOM05D000533 ORTHO05D006151 1.2e-65 253.4 165 77.6
Medtr4g050810 Medicago truncatula HOM05D000533 ORTHO05D006151 9.9e-65 250.4 158 79.7
Nn1g00559 Nelumbo nucifera HOM05D000533 ORTHO05D006151 2.9e-64 248.8 157 86.0
Gohir.A09G046292 Gossypium hirsutum HOM05D000533 ORTHO05D006151 1.9e-63 246.1 165 83.0
HanXRQChr13g0413911 Helianthus annuus HOM05D000533 ORTHO05D006151 4.6e-62 241.5 140 92.9
Solyc11g021220.2 Solanum lycopersicum HOM05D000533 ORTHO05D006151 2.3e-61 239.2 144 81.2
HanXRQChr13g0413691 Helianthus annuus HOM05D000533 ORTHO05D006151 3.9e-61 238.4 140 92.1
HanXRQChr13g0413761 Helianthus annuus HOM05D000533 ORTHO05D006151 3.9e-61 238.4 140 92.1
HanXRQChr13g0413841 Helianthus annuus HOM05D000533 ORTHO05D006151 3.9e-61 238.4 140 92.1
Aqoxy4G02725 Aquilegia oxysepala HOM05D000533 ORTHO05D006151 1.6e-59 233.0 129 96.1
Medtr3g054410 Medicago truncatula HOM05D000533 ORTHO05D006151 2.8e-59 232.3 133 84.2
HanXRQChr00c0495g0575151 Helianthus annuus HOM05D000533 ORTHO05D006151 1.5e-57 226.5 155 75.5
TPR.G38950 Trifolium pratense HOM05D000533 ORTHO05D006151 1.7e-56 223.0 131 82.4
Mapoly0048s0041 Marchantia polymorpha HOM05D000533 ORTHO05D006151 1.9e-55 219.5 160 66.2
SabraPtG0005600 Salix brachista HOM05D000533 ORTHO05D006151 7.1e-55 217.6 154 79.2
Sed0013644 Sechium edule HOM05D000533 ORTHO05D006151 1.0e-53 213.8 102 98.0
Sed0017608 Sechium edule HOM05D000533 ORTHO05D006151 1.0e-53 213.8 102 98.0
HanXRQChr00c0504g0575311 Helianthus annuus HOM05D000533 ORTHO05D006151 2.3e-53 212.6 102 98.0
Gohir.1Z049779 Gossypium hirsutum HOM05D000533 ORTHO05D006151 3.0e-53 212.2 139 86.3
C07p33460 Brassica napus HOM05D000533 ORTHO05D006151 5.1e-53 211.5 123 94.3
CSS0023353 Camellia sinensis var. sinensis HOM05D000533 ORTHO05D006151 1.9e-52 209.5 119 94.1
Sed0016654 Sechium edule HOM05D000533 ORTHO05D006151 9.6e-52 207.2 99 98.0
HanXRQChr13g0421831 Helianthus annuus HOM05D000533 ORTHO05D006151 6.2e-51 204.5 117 94.0
Medtr5g015855 Medicago truncatula HOM05D000533 ORTHO05D006151 6.2e-51 204.5 130 87.7
Lsat_1_v5_gn_4_118101 Lactuca sativa HOM05D000533 ORTHO05D006151 4.0e-50 201.8 139 74.1
MBI10_g47589_MAGBIO Magnolia biondii HOM05D000533 ORTHO05D001069 6.9e-50 201.1 118 93.2
MBI10_g47594_MAGBIO Magnolia biondii HOM05D000533 ORTHO05D001069 6.9e-50 201.1 118 93.2
Gohir.D11G334051 Gossypium hirsutum HOM05D000533 ORTHO05D006151 2.6e-49 199.1 97 95.9
Psat1g104880 Pisum sativum HOM05D000533 ORTHO05D006151 3.8e-48 195.3 97 93.8
Nitab4.5_0007979g0080 Nicotiana tabacum HOM05D000533 ORTHO05D006151 1.9e-47 193.0 139 73.4
Manes.17G012402 Manihot esculenta HOM05D000533 ORTHO05D006151 2.4e-47 192.6 158 65.8
BolSC29t60548H Brassica oleracea HOM05D000533 ORTHO05D006151 7.1e-47 191.0 94 92.6
BolSC49t61145H Brassica oleracea HOM05D000533 ORTHO05D006151 9.3e-47 190.7 94 92.6
BraSC103t45431Z Brassica rapa HOM05D000533 ORTHO05D006151 9.3e-47 190.7 94 92.6
C09p40320 Brassica napus HOM05D000533 ORTHO05D006151 1.2e-46 190.3 92 94.6
CARHR282460 Cardamine hirsuta HOM05D000533 ORTHO05D006151 1.2e-46 190.3 92 94.6
Sed0021575 Sechium edule HOM05D000533 ORTHO05D006151 1.2e-46 190.3 95 92.6
BolSC44t60824H Brassica oleracea HOM05D000533 ORTHO05D006151 4.6e-46 188.3 91 94.5
BraSC179t45772Z Brassica rapa HOM05D000533 ORTHO05D006151 4.6e-46 188.3 94 91.5
Gohir.A04G053104 Gossypium hirsutum HOM05D000533 ORTHO05D006151 6.0e-46 188.0 92 94.6
Gohir.D06G133750 Gossypium hirsutum HOM05D000533 ORTHO05D006151 8.7e-45 184.1 91 93.4
Gohir.A06G128502 Gossypium hirsutum HOM05D000533 ORTHO05D006151 1.9e-44 183.0 99 86.9
Gohir.D03G073128 Gossypium hirsutum HOM05D000533 ORTHO05D006151 1.8e-42 176.4 83 97.6
HanXRQChr15g0464661 Helianthus annuus HOM05D000533 ORTHO05D006151 4.0e-42 175.3 100 95.0
Ciclev10010202m.g Citrus clementina HOM05D000533 ORTHO05D006151 2.0e-41 172.9 124 69.4
HanXRQChr01g0000261 Helianthus annuus HOM05D000533 ORTHO05D006151 2.6e-41 172.6 98 95.9
Gohir.A11G178850 Gossypium hirsutum HOM05D000533 ORTHO05D006151 3.4e-41 172.2 95 84.2
Solyc02g011780.3 Solanum lycopersicum HOM05D000533 ORTHO05D006151 2.2e-40 169.5 138 65.2
Glyma.18G155500 Glycine max HOM05D000533 ORTHO05D006151 5.4e-39 164.9 92 81.5
Peaxi162Scf00137g00153 Petunia axillaris HOM05D000533 ORTHO05D006151 9.3e-39 164.1 97 82.5
SMO086G0041 Selaginella moellendorffii HOM05D000533 ORTHO05D006151 9.3e-39 164.1 163 53.4
Gorai.002G166200 Gossypium raimondii HOM05D000533 ORTHO05D006151 2.7e-38 162.5 95 80.0
HanXRQChr05g0152461 Helianthus annuus HOM05D000533 ORTHO05D006151 2.3e-37 159.5 92 82.6
Medtr5g063400 Medicago truncatula HOM05D000533 ORTHO05D006151 3.9e-37 158.7 94 81.9
arahy.Tifrunner.gnm1.ann1.92D98S Arachis hypogaea HOM05D000533 ORTHO05D006151 3.3e-36 155.6 92 81.5
arahy.Tifrunner.gnm1.ann1.FN06MZ Arachis hypogaea HOM05D000533 ORTHO05D006151 3.3e-36 155.6 92 81.5
arahy.Tifrunner.gnm1.ann1.JR5HFJ Arachis hypogaea HOM05D000533 ORTHO05D006151 3.3e-36 155.6 92 81.5
Psat0s411g0080 Pisum sativum HOM05D000533 ORTHO05D006151 3.3e-36 155.6 91 82.4
GSVIVG01029923001 Vitis vinifera HOM05D000533 ORTHO05D006151 9.6e-36 154.1 85 84.7
QL93p0957_0002 Quercus lobata HOM05D000533 ORTHO05D006151 3.7e-35 152.1 91 80.2
HanXRQChr00c0328g0573621 Helianthus annuus HOM05D000533 ORTHO05D006151 1.8e-34 149.8 76 93.4
Lalb_Chr09g0335441 Lupinus albus HOM05D000533 ORTHO05D006151 6.9e-34 147.9 158 53.2
Ciclev10030456m.g Citrus clementina HOM05D000533 ORTHO05D006151 2.0e-33 146.4 72 94.4
Haze_27676 Corylus avellana HOM05D000533 ORTHO05D006151 2.9e-32 142.5 89 77.5
Psat0s1160g0360 Pisum sativum HOM05D000533 ORTHO05D006151 7.1e-31 137.9 69 94.2
MELO3C000180.2 Cucumis melo HOM05D000533 ORTHO05D006151 9.3e-31 137.5 65 98.5
HanXRQChr02g0037961 Helianthus annuus HOM05D000533 ORTHO05D006151 9.3e-31 137.5 105 68.6
Lsat_1_v5_gn_6_54141 Lactuca sativa HOM05D000533 ORTHO05D006151 1.1e-28 130.6 117 63.2
MELO3C031835.2 Cucumis melo HOM05D000533 ORTHO05D006151 4.3e-28 128.6 65 90.8
Migut.D01385 Erythranthe guttata HOM05D000533 ORTHO05D006151 6.9e-26 121.3 158 48.1
HanXRQChr01g0020061 Helianthus annuus HOM05D000533 ORTHO05D006151 1.2e-25 120.6 76 76.3
HanXRQChr02g0037941 Helianthus annuus HOM05D000003 ORTHO05D000004 1.2e-22 110.5 76 73.7
BolSC37t60795H Brassica oleracea HOM05D000533 ORTHO05D006151 4.6e-22 108.6 54 92.6
BolC2t10598H Brassica oleracea HOM05D000533 ORTHO05D006151 1.3e-21 107.1 54 90.7
BolC9t56914H Brassica oleracea HOM05D000533 ORTHO05D006151 1.8e-21 106.7 53 92.5
ClCG07G005240 Citrullus lanatus HOM05D000533 ORTHO05D006151 2.3e-21 106.3 89 57.3
BolC2t08928H Brassica oleracea HOM05D000533 ORTHO05D006151 1.1e-20 104.0 53 90.6
HanXRQChr00c0289g0573151 Helianthus annuus HOM05D000533 ORTHO05D002807 2.5e-20 102.8 74 73.0
Nitab4.5_0001313g0070 Nicotiana tabacum HOM05D001200 ORTHO05D009778 7.4e-20 101.3 72 69.4
BraSC138t45533Z Brassica rapa HOM05D000533 ORTHO05D006151 2.8e-19 99.4 76 65.8
Lalb_Chr19g0130301 Lupinus albus HOM05D000533 ORTHO05D006151 2.4e-18 96.3 81 58.0
Solyc01g086880.3 Solanum lycopersicum HOM05D000533 ORTHO05D006151 2.4e-18 96.3 70 64.3
MELO3C029885.2 Cucumis melo HOM05D000533 ORTHO05D006151 9.0e-18 94.4 48 93.8
Eucgr.H02873 Eucalyptus grandis HOM05D000533 ORTHO05D006151 1.2e-17 94.0 64 68.8
BraSC58t46463Z Brassica rapa HOM05D000533 ORTHO05D006151 5.9e-17 91.7 45 91.1
Lsat_1_v5_gn_5_95761 Lactuca sativa HOM05D002069 ORTHO05D009794 8.5e-16 87.8 43 95.3
Potri.013G074950 Populus trichocarpa HOM05D000533 ORTHO05D006151 1.9e-15 86.7 47 80.9
Medtr4g070120 Medicago truncatula HOM05D000533 ORTHO05D006151 5.5e-15 85.1 114 44.7
Gohir.D01G099050 Gossypium hirsutum HOM05D000533 ORTHO05D006151 3.6e-14 82.4 40 97.5
BraSC25t45912Z Brassica rapa HOM05D000533 ORTHO05D006151 2.3e-13 79.7 38 97.4
BolSC37t60802H Brassica oleracea HOM05D000533 ORTHO05D006151 3.9e-13 79.0 41 95.1
Lalb_Chr18g0049621 Lupinus albus HOM05D000533 ORTHO05D006151 1.1e-12 77.4 55 67.3
Hund17909 Selenicereus undatus HOM05D000533 ORTHO05D006151 9.7e-12 74.3 49 71.4
Haze_02267 Corylus avellana HOM05D000533 ORTHO05D006151 1.7e-11 73.6 62 59.7
Medtr8g086030 Medicago truncatula HOM05D000533 ORTHO05D006151 1.8e-10 70.1 52 65.4
RcHm_v2.0_Chr2g0140171 Rosa chinensis HOM05D007741 ORTHO05D015647 1.4e-07 60.5 37 78.4
Aa31LG5G21720 Aethionema arabicum HOM05D000533 ORTHO05D006151 3.2e-07 59.3 129 36.4
ClCG08G006540 Citrullus lanatus HOM05D000533 ORTHO05D006151 6.1e-06 55.1 29 86.2


User provided reference genes

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