Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR111G0105 Punica granatum HOM05D001033 ORTHO05D004888 3.9e-95 351.3 159 100.0
RcHm_v2.0_CPg0502181 Rosa chinensis HOM05D001033 ORTHO05D004888 9.1e-92 340.1 159 96.9
Nn021s41548 Nelumbo nucifera HOM05D001033 ORTHO05D004888 1.5e-91 339.3 159 96.2
Ah.10g027550 Amaranthus hybridus HOM05D001033 ORTHO05D004888 4.5e-91 337.8 159 96.9
PSO548G0080 Papaver somniferum HOM05D001033 ORTHO05D004888 5.9e-91 337.4 159 96.2
COL.COLO4_03102 Corchorus olitorius HOM05D001033 ORTHO05D004888 7.7e-91 337.0 159 95.6
Gohir.1Z049399 Gossypium hirsutum HOM05D001033 ORTHO05D004888 7.7e-91 337.0 159 95.6
Gohir.A09G102100 Gossypium hirsutum HOM05D001033 ORTHO05D004888 7.7e-91 337.0 159 95.6
Hma1.2p1_2223F.1_g317410 Hydrangea macrophylla HOM05D001033 ORTHO05D004888 7.7e-91 337.0 159 95.6
EL10As12g24022 Beta vulgaris HOM05D001033 ORTHO05D004888 1.3e-90 336.3 159 96.2
EL10As1g23049 Beta vulgaris HOM05D001033 ORTHO05D004888 1.3e-90 336.3 159 96.2
Migut.D01427 Erythranthe guttata HOM05D001033 ORTHO05D004888 2.9e-90 335.1 159 95.0
DCAR_032487 Daucus carota HOM05D001033 ORTHO05D004888 5.0e-90 334.3 159 93.7
Medtr4g035040 Medicago truncatula HOM05D001033 ORTHO05D004888 1.4e-89 332.8 159 93.7
Medtr7g021800 Medicago truncatula HOM05D001033 ORTHO05D004888 1.4e-89 332.8 159 93.7
Peaxi162Scf00334g00124 Petunia axillaris HOM05D001033 ORTHO05D004888 2.5e-89 332.0 159 95.0
QL93p0270_0002 Quercus lobata HOM05D001033 ORTHO05D004888 3.2e-89 331.6 158 94.9
SalBow1G1376 Salvia bowleyana HOM05D001033 ORTHO05D004888 3.2e-89 331.6 159 93.7
Gohir.D03G073392 Gossypium hirsutum HOM05D001033 ORTHO05D004888 4.2e-89 331.3 159 94.3
Potri.013G163200 Populus trichocarpa HOM05D001033 ORTHO05D004888 4.2e-89 331.3 160 94.4
LjContig00318g0025596 Lotus japonicus HOM05D001033 ORTHO05D004888 5.5e-89 330.9 159 93.1
CAN.G219.25 Capsicum annuum HOM05D001033 ORTHO05D004888 7.2e-89 330.5 159 94.3
HanXRQChr00c0345g0573891 Helianthus annuus HOM05D001033 ORTHO05D004888 9.4e-89 330.1 159 93.7
HanXRQChr00c0702g0576871 Helianthus annuus HOM05D001033 ORTHO05D004888 9.4e-89 330.1 159 93.7
HanXRQChr02g0044951 Helianthus annuus HOM05D001033 ORTHO05D004888 9.4e-89 330.1 159 93.7
HanXRQChr07g0201011 Helianthus annuus HOM05D001033 ORTHO05D004888 9.4e-89 330.1 159 93.7
HanXRQChr08g0210301 Helianthus annuus HOM05D001033 ORTHO05D004888 9.4e-89 330.1 159 93.7
HanXRQChr10g0283491 Helianthus annuus HOM05D001033 ORTHO05D004888 9.4e-89 330.1 159 93.7
HanXRQChr10g0289211 Helianthus annuus HOM05D001033 ORTHO05D004888 9.4e-89 330.1 159 93.7
HanXRQChr10g0303781 Helianthus annuus HOM05D001033 ORTHO05D004888 9.4e-89 330.1 159 93.7
HanXRQChr11g0326761 Helianthus annuus HOM05D001033 ORTHO05D004888 9.4e-89 330.1 159 93.7
HanXRQCPg0579971 Helianthus annuus HOM05D001033 ORTHO05D004888 9.4e-89 330.1 159 93.7
unitig_91.g26504 Utricularia gibba HOM05D001033 ORTHO05D004888 2.7e-88 328.6 159 92.5
HanXRQChr10g0285321 Helianthus annuus HOM05D001033 ORTHO05D004888 7.9e-88 327.0 159 93.1
Lsat_1_v5_gn_3_99221 Lactuca sativa HOM05D001033 ORTHO05D004888 7.9e-88 327.0 157 93.6
Lsat_1_v5_gn_3_99300 Lactuca sativa HOM05D001033 ORTHO05D004888 7.9e-88 327.0 157 93.6
Lsat_1_v5_gn_4_40440 Lactuca sativa HOM05D001033 ORTHO05D004888 7.9e-88 327.0 157 93.6
HanXRQChr02g0041501 Helianthus annuus HOM05D001033 ORTHO05D004888 1.0e-87 326.6 159 93.1
Solyc00g500061.1 Solanum lycopersicum HOM05D001033 ORTHO05D004888 1.4e-87 326.2 159 93.1
Lj4g0025955 Lotus japonicus HOM05D001033 ORTHO05D004888 2.3e-87 325.5 159 92.5
Lalb_Chr07g0192281 Lupinus albus HOM05D001033 ORTHO05D004888 3.9e-87 324.7 159 91.8
Lalb_Chr20g0115661 Lupinus albus HOM05D001033 ORTHO05D004888 8.8e-87 323.6 159 91.2
Eucgr.A02747 Eucalyptus grandis HOM05D001033 ORTHO05D004888 2.6e-86 322.0 158 91.1
VMungo0498G0002 Vigna mungo HOM05D001033 ORTHO05D004888 2.6e-86 322.0 159 88.7
ATCG00420 Arabidopsis thaliana HOM05D001033 ORTHO05D004888 4.4e-86 321.2 159 91.8
BNapus_Darmor_BZH_scaffold_253p00160 Brassica napus HOM05D001033 ORTHO05D004888 4.4e-86 321.2 159 91.8
BNapus_Darmor_BZH_scaffold_287p00080 Brassica napus HOM05D001033 ORTHO05D004888 4.4e-86 321.2 159 91.8
C02p43470 Brassica napus HOM05D001033 ORTHO05D004888 4.4e-86 321.2 159 91.8
C09p40480 Brassica napus HOM05D001033 ORTHO05D004888 4.4e-86 321.2 159 91.8
BolSC45t60947H Brassica oleracea HOM05D001033 ORTHO05D004888 4.4e-86 321.2 159 91.8
BolSC46t61041H Brassica oleracea HOM05D001033 ORTHO05D004888 4.4e-86 321.2 159 91.8
BolSC47t61103H Brassica oleracea HOM05D001033 ORTHO05D004888 4.4e-86 321.2 159 91.8
BraSC25t45841Z Brassica rapa HOM05D001033 ORTHO05D004888 4.4e-86 321.2 159 91.8
BraSC25t45874Z Brassica rapa HOM05D001033 ORTHO05D004888 4.4e-86 321.2 159 91.8
BraSC58t46413Z Brassica rapa HOM05D001033 ORTHO05D004888 4.4e-86 321.2 159 91.8
BraSC58t46484Z Brassica rapa HOM05D001033 ORTHO05D004888 4.4e-86 321.2 159 91.8
Phvul.011G056548 Phaseolus vulgaris HOM05D001033 ORTHO05D004888 7.4e-86 320.5 159 88.7
Sc19g0006000 Simmondsia chinensis HOM05D001033 ORTHO05D004888 2.8e-85 318.5 157 93.0
AL2G21460 Arabidopsis lyrata HOM05D001033 ORTHO05D004888 4.8e-85 317.8 159 90.6
BolSC45t60865H Brassica oleracea HOM05D001033 ORTHO05D004888 4.8e-85 317.8 159 91.2
TWI36G0295 Tripterygium wilfordii HOM05D001033 ORTHO05D004888 4.8e-85 317.8 159 91.2
CAN.G1183.6 Capsicum annuum HOM05D001033 ORTHO05D004888 1.1e-84 316.6 159 89.9
BolSC29t60582H Brassica oleracea HOM05D001033 ORTHO05D004888 1.4e-84 316.2 159 90.6
CAN.G170.11 Capsicum annuum HOM05D001033 ORTHO05D004888 3.1e-84 315.1 159 89.3
A06p23250 Brassica napus HOM05D001033 ORTHO05D004888 7.0e-84 313.9 159 89.9
HanXRQChr15g0480701 Helianthus annuus HOM05D001033 ORTHO05D004888 7.0e-84 313.9 151 92.7
CSS0012650 Camellia sinensis var. sinensis HOM05D001033 ORTHO05D004888 3.5e-83 311.6 159 90.6
CARHR282040 Cardamine hirsuta HOM05D001033 ORTHO05D004888 2.9e-82 308.5 154 90.9
Medtr0002s0630 Medicago truncatula HOM05D001033 ORTHO05D004888 5.0e-82 307.8 158 87.3
Ah.09g227310 Amaranthus hybridus HOM05D001033 ORTHO05D004888 9.4e-81 303.5 142 97.2
Gorai.001G177200 Gossypium raimondii HOM05D001033 ORTHO05D004888 1.4e-79 299.7 143 95.1
Sed0011576 Sechium edule HOM05D001033 ORTHO05D004888 3.0e-79 298.5 144 93.1
Sed0015951 Sechium edule HOM05D000680 ORTHO05D000738 3.0e-79 298.5 144 93.1
Sed0016230 Sechium edule HOM05D001033 ORTHO05D004888 3.0e-79 298.5 144 93.1
Sed0001763 Sechium edule HOM05D001033 ORTHO05D004888 6.7e-79 297.4 144 92.4
CAN.G91.9 Capsicum annuum HOM05D001033 ORTHO05D004888 3.7e-77 291.6 159 83.6
SEGI_35798 Sequoiadendron giganteum HOM05D001033 ORTHO05D004888 4.1e-76 288.1 159 82.4
ATR0303G003 Amborella trichopoda HOM05D001033 ORTHO05D004888 9.1e-76 287.0 139 92.8
AL2G20710 Arabidopsis lyrata HOM05D001033 ORTHO05D004888 4.5e-75 284.6 159 83.6
Gohir.D01G102242 Gossypium hirsutum HOM05D001033 ORTHO05D004888 5.0e-74 281.2 159 83.6
BraA06t25427Z Brassica rapa HOM05D001033 ORTHO05D004888 8.5e-74 280.4 149 86.6
Gohir.D07G155032 Gossypium hirsutum HOM05D001033 ORTHO05D004888 5.5e-73 277.7 139 89.9
Sed0007524 Sechium edule HOM05D000680 ORTHO05D000738 1.3e-69 266.5 144 86.1
Solyc00g500142.1 Solanum lycopersicum HOM05D001033 ORTHO05D004888 4.8e-69 264.6 133 91.0
BolSC46t60994H Brassica oleracea HOM05D001033 ORTHO05D004888 3.1e-68 261.9 159 78.0
Thhalv10010993m.g Eutrema salsugineum HOM05D001033 ORTHO05D004888 5.4e-68 261.2 159 78.0
Gohir.D07G099350 Gossypium hirsutum HOM05D001033 ORTHO05D004888 1.2e-67 260.0 133 88.7
Nn071s42392 Nelumbo nucifera HOM05D001033 ORTHO05D004888 5.9e-67 257.7 151 81.5
BolC9t55818H Brassica oleracea HOM05D001033 ORTHO05D004888 5.0e-66 254.6 163 74.8
FAN19G1182 Fragaria x ananassa HOM05D001033 ORTHO05D004888 8.0e-64 247.3 159 74.8
EL10As5g23626 Beta vulgaris HOM05D001033 ORTHO05D004888 1.0e-63 246.9 117 96.6
Nitab4.5_0001841g0030 Nicotiana tabacum HOM05D001033 ORTHO05D004888 9.8e-62 240.4 132 83.3
Gorai.005G187900 Gossypium raimondii HOM05D001033 ORTHO05D004888 1.6e-59 233.0 139 76.3
Lalb_Chr07g0192231 Lupinus albus HOM05D001033 ORTHO05D004888 3.5e-59 231.9 135 79.3
EL10Ac9g20715 Beta vulgaris HOM05D001033 ORTHO05D004888 2.3e-58 229.2 136 80.9
EL10As15g24143 Beta vulgaris HOM05D001033 ORTHO05D004888 8.6e-58 227.3 158 70.9
Nitab4.5_0001761g0190 Nicotiana tabacum HOM05D001033 ORTHO05D004888 1.0e-55 220.3 112 89.3
Gorai.001G107100 Gossypium raimondii HOM05D001033 ORTHO05D004888 1.4e-55 219.9 133 79.7
Duzib192G0593 Durio zibethinus HOM05D001033 ORTHO05D004888 1.5e-54 216.5 109 90.8
Lj2C1237T30 Lonicera japonica HOM05D001033 ORTHO05D004888 2.6e-54 215.7 140 74.3
Lj2C1239T58 Lonicera japonica HOM05D001033 ORTHO05D004888 2.6e-54 215.7 140 74.3
Lj2C1239T8 Lonicera japonica HOM05D001033 ORTHO05D004888 2.6e-54 215.7 140 74.3
C02p28640 Brassica napus HOM05D001033 ORTHO05D004888 5.7e-54 214.5 107 89.7
BolC2t08910H Brassica oleracea HOM05D001033 ORTHO05D004888 5.7e-54 214.5 107 89.7
vmacro22414 Vaccinium macrocarpon HOM05D001033 ORTHO05D004888 1.3e-53 213.4 109 91.7
SMO086G0027 Selaginella moellendorffii HOM05D001033 ORTHO05D004888 2.9e-53 212.2 159 64.2
SMO086G0049 Selaginella moellendorffii HOM05D001033 ORTHO05D004888 2.9e-53 212.2 159 64.2
SMO233G0001 Selaginella moellendorffii HOM05D001033 ORTHO05D004888 2.9e-53 212.2 159 64.2
Gohir.A09G102850 Gossypium hirsutum HOM05D001033 ORTHO05D004888 1.4e-52 209.9 101 92.1
MBI06_g39081_MAGBIO Magnolia biondii HOM05D001033 ORTHO05D004888 5.4e-52 208.0 102 90.2
Migut.D01354 Erythranthe guttata HOM05D001033 ORTHO05D004888 7.8e-51 204.1 112 84.8
PSO302G0237 Papaver somniferum HOM05D001033 ORTHO05D004888 1.3e-50 203.4 100 91.0
Prupe.1G270900 Prunus persica HOM05D001033 ORTHO05D004888 1.7e-50 203.0 95 96.8
SGA_v2.0_scaffold781G53594 Striga asiatica HOM05D001033 ORTHO05D004888 2.9e-50 202.2 162 65.4
Lsat_1_v5_gn_2_5601 Lactuca sativa HOM05D001033 ORTHO05D004888 8.6e-50 200.7 101 89.1
Gorai.009G225200 Gossypium raimondii HOM05D001033 ORTHO05D004888 4.3e-49 198.4 109 86.2
BolC7t41665H Brassica oleracea HOM05D001033 ORTHO05D004888 1.6e-48 196.4 110 83.6
Gohir.D05G218250 Gossypium hirsutum HOM05D001033 ORTHO05D004888 6.8e-47 191.0 109 81.7
Nn1g03019 Nelumbo nucifera HOM05D001033 ORTHO05D004888 1.2e-46 190.3 150 70.7
SEGI_19633 Sequoiadendron giganteum HOM05D000580 ORTHO05D001362 1.2e-46 190.3 108 80.6
Nitab4.5_0005412g0030 Nicotiana tabacum HOM05D001033 ORTHO05D004888 2.0e-46 189.5 111 78.4
arahy.Tifrunner.gnm1.ann1.XVSZ20 Arachis hypogaea HOM05D001033 ORTHO05D004888 2.6e-46 189.1 115 74.8
PGSC0003DMG400002651 Solanum tuberosum HOM05D001033 ORTHO05D004888 8.3e-45 184.1 92 92.4
arahy.Tifrunner.gnm1.ann1.GNV4IL Arachis hypogaea HOM05D001033 ORTHO05D004888 7.8e-43 177.6 90 86.7
Oeu062837.1 Olea europaea HOM05D001033 ORTHO05D004888 2.3e-42 176.0 100 83.0
Peaxi162Scf00110g00002 Petunia axillaris HOM05D001033 ORTHO05D004888 5.0e-42 174.9 83 96.4
BolSC29t60459H Brassica oleracea HOM05D001033 ORTHO05D004888 6.6e-42 174.5 89 89.9
DCAR_022590 Daucus carota HOM05D013260 ORTHO05D004888 1.1e-41 173.7 84 92.9
CAN.G386.17 Capsicum annuum HOM05D000388 ORTHO05D004888 1.5e-41 173.3 83 95.2
arahy.Tifrunner.gnm1.ann1.WN69VX Arachis hypogaea HOM05D001033 ORTHO05D004888 2.5e-41 172.6 83 95.2
unitig_87.g27944 Utricularia gibba HOM05D000388 ORTHO05D004888 1.2e-40 170.2 104 75.0
Haze_27536 Corylus avellana HOM05D001033 ORTHO05D004888 1.6e-40 169.9 83 92.8
MELO3C029536.2 Cucumis melo HOM05D001033 ORTHO05D004888 1.8e-39 166.4 83 90.4
EL10Ac4g08633 Beta vulgaris HOM05D001033 ORTHO05D004888 5.2e-39 164.9 82 92.7
PGSC0003DMG400019224 Solanum tuberosum HOM05D001033 ORTHO05D004888 3.2e-36 155.6 92 77.2
CAN.G100.48 Capsicum annuum HOM05D001033 ORTHO05D004888 2.1e-35 152.9 78 87.2
SEGI_38193 Sequoiadendron giganteum HOM05D001033 ORTHO05D004888 2.1e-35 152.9 84 84.5
SEGI_08348 Sequoiadendron giganteum HOM05D001033 ORTHO05D004888 6.0e-35 151.4 83 84.3
SEGI_20198 Sequoiadendron giganteum HOM05D001033 ORTHO05D004888 1.7e-34 149.8 83 83.1
RcHm_v2.0_Chr7g0209391 Rosa chinensis HOM05D001033 ORTHO05D004888 5.1e-34 148.3 72 94.4
Nitab4.5_0011099g0060 Nicotiana tabacum HOM05D001033 ORTHO05D004888 1.1e-33 147.1 78 85.9
Lalb_Chr03g0039371 Lupinus albus HOM05D001033 ORTHO05D004888 2.1e-32 142.9 68 95.6
Sed0002731 Sechium edule HOM05D001033 ORTHO05D004888 5.8e-30 134.8 124 58.1
HanXRQChr09g0274591 Helianthus annuus HOM05D001033 ORTHO05D004888 9.9e-30 134.0 65 92.3
Gohir.A10G200850 Gossypium hirsutum HOM05D001033 ORTHO05D004888 1.2e-27 127.1 59 94.9
Nn055s41942 Nelumbo nucifera HOM05D001033 ORTHO05D004888 4.6e-27 125.2 57 98.2
TAR633G0438 Trochodendron aralioides HOM05D001033 ORTHO05D004888 2.5e-25 119.4 58 89.7
HanXRQChr17g0559251 Helianthus annuus HOM05D001033 ORTHO05D004888 3.3e-25 119.0 59 89.8
ClCG07G012530 Citrullus lanatus HOM05D001033 ORTHO05D004888 4.7e-24 115.2 55 90.9
Solyc01g017420.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 8.1e-24 114.4 69 73.9
Lalb_Chr03g0030861 Lupinus albus HOM05D001033 ORTHO05D004888 9.9e-22 107.5 54 88.9
Solyc01g056470.1 Solanum lycopersicum HOM05D000890 ORTHO05D004888 1.7e-21 106.7 99 54.5
BolSC35t60639H Brassica oleracea HOM05D001033 ORTHO05D004888 3.8e-21 105.5 53 88.7
TPR.G37622 Trifolium pratense HOM05D001033 ORTHO05D004888 2.4e-20 102.8 50 92.0
Lalb_Chr23g0274161 Lupinus albus HOM05D001033 ORTHO05D004888 4.2e-20 102.1 53 83.0
C09p29570 Brassica napus HOM05D001033 ORTHO05D004888 3.9e-18 95.5 43 95.3
Phvul.005G068600 Phaseolus vulgaris HOM05D001033 ORTHO05D004888 9.6e-17 90.9 86 48.8
ClCG00G002680 Citrullus lanatus HOM05D001033 ORTHO05D004888 4.8e-16 88.6 41 92.7
EL10Ac5g11368 Beta vulgaris HOM05D001033 ORTHO05D004888 9.0e-15 84.3 48 83.3
TAR338G0003 Trochodendron aralioides HOM05D001033 ORTHO05D004888 1.7e-13 80.1 39 89.7
MELO3C034226.2 Cucumis melo HOM05D001033 ORTHO05D004888 7.9e-11 71.2 53 64.2
AUR62014217 Chenopodium quinoa HOM05D001033 ORTHO05D002045 5.1e-10 68.6 32 93.8
Lalb_Chr03g0030871 Lupinus albus HOM05D001033 ORTHO05D004888 5.6e-09 65.1 68 47.1
Hund10567 Selenicereus undatus HOM05D001033 ORTHO05D004888 8.1e-08 61.2 38 65.8
Cre07.g327400 Chlamydomonas reinhardtii HOM05D001560 ORTHO05D004675 1.1e-07 60.8 98 34.7
Haze_26224 Corylus avellana HOM05D001560 ORTHO05D004675 1.1e-07 60.8 88 33.0
Nitab4.5_0007578g0070 Nicotiana tabacum HOM05D012508 ORTHO05D011743 1.4e-07 60.5 59 55.9
BolSC47t61120H Brassica oleracea HOM05D001033 ORTHO05D004888 4.5e-06 55.5 24 95.8
FvH4_3g38401 Fragaria vesca HOM05D001033 ORTHO05D004888 7.6e-06 54.7 27 88.9


User provided reference genes

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