Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR111G0056 Punica granatum HOM05D005034 ORTHO05D006234 7.5e-178 627.1 320 100.0
Gohir.1Z049831 Gossypium hirsutum HOM05D005034 ORTHO05D006234 3.0e-142 508.8 324 81.5
Gohir.A02G134200 Gossypium hirsutum HOM05D005034 ORTHO05D006234 3.0e-142 508.8 324 81.5
Lj2P1238T83 Lonicera japonica HOM05D005034 ORTHO05D006234 2.5e-141 505.8 320 80.6
PSO548G0041 Papaver somniferum HOM05D005034 ORTHO05D006234 4.7e-140 501.5 320 80.6
Nn064s42213 Nelumbo nucifera HOM05D005034 ORTHO05D006234 4.4e-138 495.0 316 79.7
Nn212s45210 Nelumbo nucifera HOM05D005034 ORTHO05D006234 4.4e-138 495.0 316 79.7
HanXRQChr02g0059701 Helianthus annuus HOM05D005034 ORTHO05D006234 2.4e-136 489.2 320 79.1
HanXRQChr05g0152421 Helianthus annuus HOM05D005034 ORTHO05D006234 2.4e-136 489.2 320 79.1
HanXRQChr06g0182991 Helianthus annuus HOM05D005034 ORTHO05D006234 2.4e-136 489.2 320 79.1
HanXRQCPg0580361 Helianthus annuus HOM05D005034 ORTHO05D006234 2.4e-136 489.2 320 79.1
Medtr4g006130 Medicago truncatula HOM05D005034 ORTHO05D006234 1.6e-135 486.5 320 77.2
CAN.G1045.13 Capsicum annuum HOM05D005034 ORTHO05D006234 1.3e-134 483.4 316 78.5
CAN.G134.8 Capsicum annuum HOM05D005034 ORTHO05D006234 1.3e-134 483.4 316 78.5
CAN.G1526.4 Capsicum annuum HOM05D005034 ORTHO05D006234 1.3e-134 483.4 316 78.5
CAN.G278.5 Capsicum annuum HOM05D005034 ORTHO05D006234 1.3e-134 483.4 316 78.5
CAN.G413.9 Capsicum annuum HOM05D005034 ORTHO05D006234 1.9e-133 479.6 316 77.8
LjContig00318g0021446 Lotus japonicus HOM05D005034 ORTHO05D006234 2.5e-133 479.2 320 77.2
LjContig00319g0026028 Lotus japonicus HOM05D005034 ORTHO05D006234 2.5e-133 479.2 320 77.2
DCAR_032535 Daucus carota HOM05D005034 ORTHO05D006234 2.1e-132 476.1 321 76.9
Sed0013321 Sechium edule HOM05D005034 ORTHO05D006234 6.2e-132 474.6 320 76.2
arahy.Tifrunner.gnm1.ann1.ZFUC3L Arachis hypogaea HOM05D005034 ORTHO05D006234 1.4e-128 463.4 320 75.0
BolSC29t60503H Brassica oleracea HOM05D005034 ORTHO05D006234 6.0e-127 458.0 325 73.5
BolSC35t60695H Brassica oleracea HOM05D005034 ORTHO05D006234 6.0e-127 458.0 325 73.5
BolSC35t60701H Brassica oleracea HOM05D005034 ORTHO05D006234 6.0e-127 458.0 325 73.5
BolSC46t60961H Brassica oleracea HOM05D005034 ORTHO05D006234 6.0e-127 458.0 325 73.5
BolSC47t61067H Brassica oleracea HOM05D005034 ORTHO05D006234 6.0e-127 458.0 325 73.5
C07p33420 Brassica napus HOM05D005034 ORTHO05D006234 1.7e-126 456.4 325 73.2
C09p40380 Brassica napus HOM05D005034 ORTHO05D006234 1.7e-126 456.4 325 73.2
ATCG01040 Arabidopsis thaliana HOM05D005034 ORTHO05D006234 2.3e-126 456.1 325 74.2
BraSC103t45426Z Brassica rapa HOM05D005034 ORTHO05D006234 2.3e-126 456.1 325 72.9
BraSC179t45777Z Brassica rapa HOM05D005034 ORTHO05D006234 2.3e-126 456.1 325 72.9
BraSC25t45907Z Brassica rapa HOM05D005034 ORTHO05D006234 2.3e-126 456.1 325 72.9
BraSC59t46548Z Brassica rapa HOM05D005034 ORTHO05D006234 2.3e-126 456.1 325 72.9
BolSC49t61140H Brassica oleracea HOM05D005034 ORTHO05D006234 3.0e-126 455.7 323 73.4
Sed0020615 Sechium edule HOM05D005034 ORTHO05D006234 3.9e-126 455.3 321 74.1
BolSC29t60543H Brassica oleracea HOM05D005034 ORTHO05D006234 2.5e-125 452.6 324 73.1
SalBow1G5942 Salvia bowleyana HOM05D005034 ORTHO05D006234 5.6e-125 451.4 320 73.8
HanXRQChr11g0323731 Helianthus annuus HOM05D005034 ORTHO05D006234 9.6e-125 450.7 320 74.4
Gohir.D03G077700 Gossypium hirsutum HOM05D005034 ORTHO05D006234 1.1e-123 447.2 278 81.3
Peaxi162Scf01164g00036 Petunia axillaris HOM05D005034 ORTHO05D006234 4.5e-122 441.8 328 71.6
Gohir.D01G134300 Gossypium hirsutum HOM05D005034 ORTHO05D006234 4.2e-120 435.3 324 71.6
Gohir.A10G117233 Gossypium hirsutum HOM05D005034 ORTHO05D006234 6.0e-119 431.4 283 79.5
Sed0006489 Sechium edule HOM05D005034 ORTHO05D006234 1.3e-118 430.3 293 75.4
Lalb_Chr07g0191731 Lupinus albus HOM05D005034 ORTHO05D006234 1.1e-117 427.2 316 70.9
CSS0025903 Camellia sinensis var. sinensis HOM05D005034 ORTHO05D006234 2.8e-116 422.5 279 78.5
BraSC138t45537Z Brassica rapa HOM05D005034 ORTHO05D006234 6.0e-111 404.8 302 70.9
HanXRQChr09g0258531 Helianthus annuus HOM05D005034 ORTHO05D006234 3.0e-110 402.5 320 69.1
HanXRQChr13g0413491 Helianthus annuus HOM05D005034 ORTHO05D006234 5.1e-110 401.7 269 78.1
HanXRQChr00c0690g0576751 Helianthus annuus HOM05D005034 ORTHO05D006234 6.7e-102 374.8 318 65.1
HanXRQChr17g0557781 Helianthus annuus HOM05D005034 ORTHO05D006234 2.9e-97 359.4 321 62.3
Oeu010692.1 Olea europaea HOM05D005034 ORTHO05D006234 6.7e-94 348.2 274 65.3
GSVIVG01004975001 Vitis vinifera HOM05D005034 ORTHO05D006234 1.5e-93 347.1 272 66.2
BolSC37t60790H Brassica oleracea HOM05D005034 ORTHO05D006234 3.4e-90 335.9 230 73.9
MBI10_g47592_MAGBIO Magnolia biondii HOM05D005034 ORTHO05D006234 5.0e-89 332.0 272 67.3
Potri.001G342966 Populus trichocarpa HOM05D005034 ORTHO05D006234 2.3e-86 323.2 220 75.9
Eucgr.C03526 Eucalyptus grandis HOM05D005034 ORTHO05D006234 4.7e-79 298.9 233 67.4
RcHm_v2.0_Chr5g0017241 Rosa chinensis HOM05D005034 ORTHO05D006234 3.9e-78 295.8 171 85.4
Ciclev10010882m.g Citrus clementina HOM05D005034 ORTHO05D006234 5.2e-78 295.4 273 57.1
Ciclev10018423m.g Citrus clementina HOM05D005034 ORTHO05D006234 5.2e-78 295.4 273 57.1
Ciclev10027633m.g Citrus clementina HOM05D005034 ORTHO05D006234 5.2e-78 295.4 273 57.1
Ciclev10027652m.g Citrus clementina HOM05D005034 ORTHO05D006234 5.2e-78 295.4 273 57.1
Ciclev10030457m.g Citrus clementina HOM05D005034 ORTHO05D006234 5.2e-78 295.4 273 57.1
CAN.G8.23 Capsicum annuum HOM05D005034 ORTHO05D006234 2.2e-76 290.0 219 69.9
Migut.D01256 Erythranthe guttata HOM05D005034 ORTHO05D006234 3.7e-76 289.3 281 55.9
CAN.G939.6 Capsicum annuum HOM05D005034 ORTHO05D006234 9.1e-75 284.6 179 79.3
MBI10_g47591_MAGBIO Magnolia biondii HOM05D005034 ORTHO05D006234 2.6e-74 283.1 251 62.2
Lj9P89T19 Lonicera japonica HOM05D005034 ORTHO05D006234 7.2e-72 275.0 198 75.8
PGSC0003DMG400029012 Solanum tuberosum HOM05D005034 ORTHO05D006234 6.1e-71 271.9 175 77.1
CAN.G1431.1 Capsicum annuum HOM05D005034 ORTHO05D006234 2.0e-69 266.9 171 78.4
CAN.G424.20 Capsicum annuum HOM05D005034 ORTHO05D006234 2.0e-69 266.9 171 78.4
Solyc00g500085.1 Solanum lycopersicum HOM05D005034 ORTHO05D006234 1.4e-67 260.8 179 77.1
Pp3c2_30980 Physcomitrium patens HOM05D005034 ORTHO05D006234 2.7e-66 256.5 319 46.4
BraSC143t45663Z Brassica rapa HOM05D005034 ORTHO05D006234 5.0e-65 252.3 199 70.4
HanXRQChr09g0251521 Helianthus annuus HOM05D005034 ORTHO05D006234 3.4e-61 239.6 184 70.1
RcHm_v2.0_CPg0502821 Rosa chinensis HOM05D005034 ORTHO05D006234 2.8e-60 236.5 147 83.7
BolC9t56928H Brassica oleracea HOM05D005034 ORTHO05D006234 7.0e-59 231.9 178 72.5
Lalb_Chr23g0274781 Lupinus albus HOM05D005034 ORTHO05D006234 1.9e-56 223.8 187 64.2
MCO12G235 Micromonas commoda HOM05D005034 ORTHO05D006234 9.5e-56 221.5 287 42.9
arahy.Tifrunner.gnm1.ann1.RW0ZF5 Arachis hypogaea HOM05D005034 ORTHO05D006234 2.6e-53 213.4 172 66.9
Solyc11g021210.2 Solanum lycopersicum HOM05D005034 ORTHO05D006234 2.8e-52 209.9 178 64.6
Gohir.D08G145250 Gossypium hirsutum HOM05D005034 ORTHO05D006234 7.0e-51 205.3 108 88.9
Phvul.002G050101 Phaseolus vulgaris HOM05D005034 ORTHO05D006234 1.3e-49 201.1 129 72.9
BolSC45t60912H Brassica oleracea HOM05D005034 ORTHO05D006234 1.9e-48 197.2 144 71.5
CARHR178430 Cardamine hirsuta HOM05D005034 ORTHO05D006234 2.5e-48 196.8 136 70.6
Prupe.5G061000 Prunus persica HOM05D005034 ORTHO05D006234 4.3e-48 196.1 177 62.1
arahy.Tifrunner.gnm1.ann1.4P2RM7 Arachis hypogaea HOM05D005034 ORTHO05D006234 5.6e-48 195.7 168 61.3
Gorai.009G333000 Gossypium raimondii HOM05D005034 ORTHO05D006234 3.6e-47 193.0 107 85.0
PRCOL_00005002 Prasinoderma coloniale HOM05D005034 ORTHO05D006234 3.6e-47 193.0 294 38.8
Ciclev10013963m.g Citrus clementina HOM05D005034 ORTHO05D006234 1.8e-46 190.7 273 44.7
Solyc08g022180.1 Solanum lycopersicum HOM05D005034 ORTHO05D006234 1.2e-45 188.0 106 81.1
Nn1g08156 Nelumbo nucifera HOM05D005034 ORTHO05D006234 1.5e-45 187.6 121 74.4
Gohir.D05G311850 Gossypium hirsutum HOM05D005034 ORTHO05D006234 2.0e-45 187.2 107 83.2
HanXRQChr08g0212001 Helianthus annuus HOM05D005034 ORTHO05D006234 3.7e-44 183.0 128 76.6
Hma1.2p1_0201F.1_g086105 Hydrangea macrophylla HOM05D005034 ORTHO05D006234 1.8e-43 180.6 90 93.3
Hma1.2p1_0201F.1_g086120 Hydrangea macrophylla HOM05D005034 ORTHO05D006234 1.8e-43 180.6 90 93.3
Hund25564 Selenicereus undatus HOM05D005034 ORTHO05D006234 9.2e-43 178.3 249 47.8
HanXRQChr03g0073081 Helianthus annuus HOM05D005034 ORTHO05D006234 1.0e-41 174.9 183 56.8
Medtr4g006180 Medicago truncatula HOM05D005034 ORTHO05D006234 5.0e-41 172.6 161 60.2
SMO086G0050 Selaginella moellendorffii HOM05D005034 ORTHO05D006234 3.3e-40 169.9 277 44.8
Gorai.002G058800 Gossypium raimondii HOM05D005034 ORTHO05D006234 4.3e-40 169.5 207 48.8
Gohir.D03G074401 Gossypium hirsutum HOM05D005034 ORTHO05D006234 2.1e-39 167.2 207 48.3
HanXRQChr00c0504g0575291 Helianthus annuus HOM05D005034 ORTHO05D006234 2.8e-39 166.8 113 77.9
Nitab4.5_0000100g0130 Nicotiana tabacum HOM05D005034 ORTHO05D006234 2.0e-37 160.6 181 55.2
HanXRQChr00c0495g0575141 Helianthus annuus HOM05D005034 ORTHO05D006234 3.4e-37 159.8 129 66.7
Gorai.003G181700 Gossypium raimondii HOM05D005034 ORTHO05D006234 2.2e-36 157.1 80 88.8
Gohir.D03G171050 Gossypium hirsutum HOM05D005034 ORTHO05D006234 1.9e-35 154.1 80 87.5
Hma1.2p1_0665F.1_g199050 Hydrangea macrophylla HOM05D005034 ORTHO05D006234 2.4e-35 153.7 90 90.0
Manes.18G138354 Manihot esculenta HOM05D005034 ORTHO05D006234 6.0e-34 149.1 95 81.1
Migut.L00236 Erythranthe guttata HOM05D005034 ORTHO05D006234 1.7e-33 147.5 82 81.7
Gohir.D10G247550 Gossypium hirsutum HOM05D005034 ORTHO05D006234 1.7e-33 147.5 98 71.4
HanXRQChr01g0020081 Helianthus annuus HOM05D005034 ORTHO05D006234 5.0e-33 146.0 75 86.7
Gorai.011G286000 Gossypium raimondii HOM05D005034 ORTHO05D006234 1.1e-32 144.8 98 70.4
Migut.L00237 Erythranthe guttata HOM05D005034 ORTHO05D006234 1.9e-32 144.1 82 79.3
BolC2t10593H Brassica oleracea HOM05D005034 ORTHO05D006234 5.6e-32 142.5 110 70.9
Eucgr.J01554 Eucalyptus grandis HOM05D005034 ORTHO05D006234 1.2e-31 141.4 70 90.0
Migut.L00238 Erythranthe guttata HOM05D005034 ORTHO05D006234 1.4e-30 137.9 70 87.1
BolC6t36207H Brassica oleracea HOM05D005034 ORTHO05D006234 7.1e-27 125.6 100 67.0
Nitab4.5_0001130g0150 Nicotiana tabacum HOM05D005034 ORTHO05D006234 1.0e-25 121.7 67 80.6
Lsat_1_v5_gn_5_11321 Lactuca sativa HOM05D005034 ORTHO05D006234 2.3e-25 120.6 82 69.5
HanXRQChr08g0211991 Helianthus annuus HOM05D005034 ORTHO05D006234 3.0e-25 120.2 64 85.9
CAN.G1045.14 Capsicum annuum HOM05D005034 ORTHO05D006234 1.1e-22 111.7 89 66.3
Lalb_Chr18g0049451 Lupinus albus HOM05D005034 ORTHO05D006234 2.4e-22 110.5 102 58.8
Nitab4.5_0001130g0160 Nicotiana tabacum HOM05D005034 ORTHO05D006234 3.1e-22 110.2 67 85.1
Medtr0002s0180 Medicago truncatula HOM05D005034 ORTHO05D006234 1.2e-21 108.2 327 27.5
HanXRQChr01g0020091 Helianthus annuus HOM05D005034 ORTHO05D006234 2.6e-21 107.1 74 77.0
Lalb_Chr05g0227101 Lupinus albus HOM05D005034 ORTHO05D006234 7.6e-21 105.5 66 81.8
Eucgr.K01772 Eucalyptus grandis HOM05D005034 ORTHO05D006234 8.4e-20 102.1 76 73.7
MBI19_g35567_MAGBIO Magnolia biondii HOM05D005034 ORTHO05D006234 1.9e-19 100.9 66 72.7
Psat0s8829g0120 Pisum sativum HOM05D005034 ORTHO05D006234 2.7e-18 97.1 45 91.1
arahy.Tifrunner.gnm1.ann1.A5A200 Arachis hypogaea HOM05D005034 ORTHO05D006234 1.0e-17 95.1 94 64.9
Hma1.2p1_0382F.1_g140190 Hydrangea macrophylla HOM05D005034 ORTHO05D006234 3.9e-17 93.2 52 86.5
Nitab4.5_0001446g0070 Nicotiana tabacum HOM05D005034 ORTHO05D006234 3.9e-17 93.2 61 78.7
HanXRQChr00c0718g0576991 Helianthus annuus HOM05D005034 ORTHO05D006234 1.5e-16 91.3 53 77.4
arahy.Tifrunner.gnm1.ann1.5N7P5J Arachis hypogaea HOM05D005034 ORTHO05D006234 2.6e-13 80.5 59 71.2
Medtr4g050940 Medicago truncatula HOM05D001243 ORTHO05D000843 7.6e-13 79.0 49 77.6
CAN.G262.6 Capsicum annuum HOM05D005034 ORTHO05D006234 4.2e-11 73.2 67 64.2
CARHR178440 Cardamine hirsuta HOM05D005034 ORTHO05D006234 1.6e-10 71.2 43 88.4
Nitab4.5_0007979g0110 Nicotiana tabacum HOM05D005034 ORTHO05D006234 7.8e-10 68.9 48 79.2
Solyc02g011730.1 Solanum lycopersicum HOM05D005034 ORTHO05D006234 3.0e-09 67.0 46 65.2
Solyc00g500194.1 Solanum lycopersicum HOM05D005034 ORTHO05D006234 5.1e-09 66.2 45 71.1
Solyc02g150101.1 Solanum lycopersicum HOM05D005034 ORTHO05D006234 1.9e-08 64.3 56 58.9
Nitab4.5_0007979g0090 Nicotiana tabacum HOM05D005034 ORTHO05D006234 1.6e-07 61.2 115 38.3
Psat5g168080 Pisum sativum HOM05D005034 ORTHO05D006234 9.0e-06 55.5 23 91.3


User provided reference genes

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