Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR111G0025 Punica granatum HOM05D001200 ORTHO05D009778 9.1e-45 183.3 102 100.0
CAN.G1526.7 Capsicum annuum HOM05D001200 ORTHO05D009778 7.7e-44 180.3 102 98.0
CAN.G278.3 Capsicum annuum HOM05D001200 ORTHO05D009778 7.7e-44 180.3 102 98.0
PGSC0003DMG402011339 Solanum tuberosum HOM05D001200 ORTHO05D009778 7.7e-44 180.3 102 98.0
Hma1.2p1_0656F.1_g196803 Hydrangea macrophylla HOM05D001200 ORTHO05D009778 1.3e-43 179.5 102 98.0
DCAR_032538 Daucus carota HOM05D001200 ORTHO05D009778 2.2e-43 178.7 102 96.1
RcHm_v2.0_Chr5g0017211 Rosa chinensis HOM05D001200 ORTHO05D009778 5.0e-43 177.6 102 97.1
RcHm_v2.0_CPg0502771 Rosa chinensis HOM05D001200 ORTHO05D009778 5.0e-43 177.6 102 97.1
HanXRQChr00c0336g0573661 Helianthus annuus HOM05D001200 ORTHO05D009778 6.5e-43 177.2 102 95.1
HanXRQChr05g0152441 Helianthus annuus HOM05D001200 ORTHO05D009778 6.5e-43 177.2 102 95.1
HanXRQChr09g0258511 Helianthus annuus HOM05D001200 ORTHO05D009778 6.5e-43 177.2 102 95.1
HanXRQChr11g0323751 Helianthus annuus HOM05D001200 ORTHO05D009778 6.5e-43 177.2 102 95.1
HanXRQChr15g0465441 Helianthus annuus HOM05D001200 ORTHO05D009778 6.5e-43 177.2 102 95.1
HanXRQChr15g0465451 Helianthus annuus HOM05D001200 ORTHO05D009778 6.5e-43 177.2 102 95.1
Nn064s42210 Nelumbo nucifera HOM05D001200 ORTHO05D009778 6.5e-43 177.2 102 96.1
HanXRQChr02g0059711 Helianthus annuus HOM05D001200 ORTHO05D002731 8.5e-43 176.8 101 95.0
HanXRQChr17g0569731 Helianthus annuus HOM05D001200 ORTHO05D009778 8.5e-43 176.8 101 95.0
HanXRQCPg0580351 Helianthus annuus HOM05D001200 ORTHO05D002731 8.5e-43 176.8 101 95.0
Gohir.1Z049531 Gossypium hirsutum HOM05D001200 ORTHO05D009778 2.5e-42 175.3 102 95.1
Gohir.A02G134500 Gossypium hirsutum HOM05D001200 ORTHO05D009778 2.5e-42 175.3 102 95.1
Gohir.A04G053130 Gossypium hirsutum HOM05D001200 ORTHO05D009778 2.5e-42 175.3 102 95.1
Gohir.A09G040995 Gossypium hirsutum HOM05D001200 ORTHO05D009778 2.5e-42 175.3 102 95.1
HanXRQChr02g0040741 Helianthus annuus HOM05D001200 ORTHO05D009778 3.2e-42 174.9 102 94.1
Lalb_Chr07g0191771 Lupinus albus HOM05D001200 ORTHO05D009778 4.2e-42 174.5 102 96.1
RcHm_v2.0_Chr5g0043031 Rosa chinensis HOM05D001200 ORTHO05D009778 7.2e-42 173.7 100 96.0
Sed0017608 Sechium edule HOM05D000533 ORTHO05D006151 7.2e-42 173.7 102 93.1
Migut.D01252 Erythranthe guttata HOM05D001200 ORTHO05D009778 9.4e-42 173.3 102 93.1
Medtr4g006110 Medicago truncatula HOM05D007371 ORTHO05D009319 2.1e-41 172.2 102 94.1
Medtr5g063410 Medicago truncatula HOM05D007371 ORTHO05D009319 2.1e-41 172.2 102 94.1
Medtr7g021710 Medicago truncatula HOM05D007371 ORTHO05D009319 2.1e-41 172.2 102 94.1
CAN.G965.6 Capsicum annuum HOM05D001200 ORTHO05D009778 6.1e-41 170.6 102 94.1
PSO548G0037 Papaver somniferum HOM05D001200 ORTHO05D009778 6.1e-41 170.6 102 93.1
AL9U11954 Arabidopsis lyrata HOM05D001200 ORTHO05D009778 1.0e-40 169.9 102 92.2
Gohir.D04G175000 Gossypium hirsutum HOM05D001200 ORTHO05D009778 1.8e-40 169.1 102 92.2
HanXRQChr13g0393091 Helianthus annuus HOM05D001200 ORTHO05D009778 1.8e-40 169.1 102 91.2
Nn1g08634 Nelumbo nucifera HOM05D001200 ORTHO05D009778 3.0e-40 168.3 102 93.1
C07p33450 Brassica napus HOM05D001200 ORTHO05D009778 4.0e-40 167.9 102 91.2
C09p40190 Brassica napus HOM05D001200 ORTHO05D009778 4.0e-40 167.9 102 91.2
BolC2t10596H Brassica oleracea HOM05D001200 ORTHO05D009778 4.0e-40 167.9 102 91.2
BolSC35t60704H Brassica oleracea HOM05D001200 ORTHO05D009778 4.0e-40 167.9 102 91.2
BolSC37t60793H Brassica oleracea HOM05D001200 ORTHO05D009778 4.0e-40 167.9 102 91.2
BolSC44t60822H Brassica oleracea HOM05D001200 ORTHO05D009778 4.0e-40 167.9 102 91.2
BolSC46t60958H Brassica oleracea HOM05D001200 ORTHO05D009778 4.0e-40 167.9 102 91.2
BolSC47t61065H Brassica oleracea HOM05D001200 ORTHO05D009778 4.0e-40 167.9 102 91.2
BraA10t43432Z Brassica rapa HOM05D001200 ORTHO05D009778 4.0e-40 167.9 102 91.2
BraSC59t46551Z Brassica rapa HOM05D001200 ORTHO05D009778 4.0e-40 167.9 102 91.2
ATCG01070 Arabidopsis thaliana HOM05D001200 ORTHO05D009778 5.2e-40 167.5 102 91.2
arahy.Tifrunner.gnm1.ann1.4VL02K Arachis hypogaea HOM05D001200 ORTHO05D009778 5.2e-40 167.5 102 93.1
arahy.Tifrunner.gnm1.ann1.9I8ZI2 Arachis hypogaea HOM05D001200 ORTHO05D009778 5.2e-40 167.5 102 93.1
arahy.Tifrunner.gnm1.ann1.V71EA1 Arachis hypogaea HOM05D001200 ORTHO05D009778 5.2e-40 167.5 102 93.1
BolC9t56923H Brassica oleracea HOM05D001200 ORTHO05D009778 2.0e-39 165.6 102 90.2
Lalb_Chr19g0127811 Lupinus albus HOM05D001200 ORTHO05D009778 4.4e-39 164.5 102 93.1
Nn1g00558 Nelumbo nucifera HOM05D001200 ORTHO05D009778 1.3e-38 162.9 102 89.2
Gohir.A08G113700 Gossypium hirsutum HOM05D001200 ORTHO05D009778 1.8e-37 159.1 102 89.2
Gohir.D13G164800 Gossypium hirsutum HOM05D001200 ORTHO05D009778 1.8e-37 159.1 102 86.3
MBI10_g47590_MAGBIO Magnolia biondii HOM05D001200 ORTHO05D002731 2.7e-36 155.2 92 92.4
MBI10_g47593_MAGBIO Magnolia biondii HOM05D001200 ORTHO05D002731 2.7e-36 155.2 92 92.4
SEGI_22361 Sequoiadendron giganteum HOM05D001200 ORTHO05D009778 2.7e-36 155.2 98 83.7
BolC6t36203H Brassica oleracea HOM05D001200 ORTHO05D009778 3.5e-36 154.8 102 84.3
EL10As15g24099 Beta vulgaris HOM05D001200 ORTHO05D009778 4.5e-36 154.5 93 90.3
EL10As15g24137 Beta vulgaris HOM05D001200 ORTHO05D002731 4.5e-36 154.5 93 90.3
Gohir.A01G112200 Gossypium hirsutum HOM05D001200 ORTHO05D009778 2.9e-35 151.8 102 83.3
Manes.17G012600 Manihot esculenta HOM05D001200 ORTHO05D009778 1.1e-34 149.8 101 83.2
Nitab4.5_0007979g0060 Nicotiana tabacum HOM05D001200 ORTHO05D009778 4.2e-34 147.9 95 87.4
Nitab4.5_0001313g0070 Nicotiana tabacum HOM05D001200 ORTHO05D009778 3.6e-33 144.8 91 90.1
CARHR282440 Cardamine hirsuta HOM05D001200 ORTHO05D009778 8.8e-32 140.2 95 83.2
Nitab4.5_0001342g0130 Nicotiana tabacum HOM05D001200 ORTHO05D002731 8.8e-32 140.2 82 91.5
LjContig00318g0024402 Lotus japonicus HOM05D001200 ORTHO05D009778 1.1e-29 133.3 102 80.4
LjContig00319g0019579 Lotus japonicus HOM05D001200 ORTHO05D009778 1.1e-29 133.3 102 80.4
Lj2g0021700 Lotus japonicus HOM05D001200 ORTHO05D009778 7.2e-26 120.6 102 75.5
HanXRQChr10g0289681 Helianthus annuus HOM05D001200 ORTHO05D009778 9.5e-26 120.2 102 72.5
C02p52240 Brassica napus HOM05D001200 ORTHO05D009778 1.4e-24 116.3 104 70.2
HanXRQChr09g0246681 Helianthus annuus HOM05D001200 ORTHO05D009778 1.8e-24 115.9 101 71.3
HanXRQChr17g0569741 Helianthus annuus HOM05D001200 ORTHO05D009778 5.2e-24 114.4 66 89.4
HanXRQChr17g0557751 Helianthus annuus HOM05D001200 ORTHO05D009778 2.6e-23 112.1 66 87.9
HanXRQChr02g0038671 Helianthus annuus HOM05D001200 ORTHO05D009778 5.7e-23 110.9 66 86.4
BraSC103t45429Z Brassica rapa HOM05D001200 ORTHO05D009778 9.8e-23 110.2 67 85.1
BolSC45t60909H Brassica oleracea HOM05D001200 ORTHO05D009778 1.7e-22 109.4 65 87.7
HanXRQChr02g0038711 Helianthus annuus HOM05D001200 ORTHO05D009778 1.7e-22 109.4 62 90.3
PGSC0003DMG400026713 Solanum tuberosum HOM05D001200 ORTHO05D009778 8.3e-22 107.1 74 82.4
Nn3g19076 Nelumbo nucifera HOM05D001200 ORTHO05D009778 1.8e-21 105.9 76 81.6
arahy.Tifrunner.gnm1.ann1.DP5I98 Arachis hypogaea HOM05D001200 ORTHO05D009778 5.4e-21 104.4 75 81.3
Glyma.18G155400 Glycine max HOM05D001200 ORTHO05D009778 7.0e-21 104.0 77 77.9
BolSC29t60506H Brassica oleracea HOM05D001200 ORTHO05D009778 1.6e-20 102.8 67 83.6
BraSC179t45774Z Brassica rapa HOM05D001200 ORTHO05D009778 1.3e-19 99.8 59 86.4
HanXRQChr08g0231311 Helianthus annuus HOM05D001200 ORTHO05D009778 2.3e-19 99.0 59 91.5
TPR.G17270 Trifolium pratense HOM05D001200 ORTHO05D009778 2.3e-19 99.0 62 88.7
Lsat_1_v5_gn_6_54101 Lactuca sativa HOM05D001200 ORTHO05D009778 1.5e-18 96.3 75 76.0
Medtr0002s0170 Medicago truncatula HOM05D001200 ORTHO05D002731 1.9e-18 95.9 73 69.9
HanXRQChr01g0000241 Helianthus annuus HOM05D001200 ORTHO05D009778 2.5e-18 95.5 54 88.9
Nn3g20216 Nelumbo nucifera HOM05D001200 ORTHO05D009778 9.5e-18 93.6 56 89.3
Glyma.08G367600 Glycine max HOM05D001200 ORTHO05D009778 4.7e-17 91.3 96 64.6
C09p24640 Brassica napus HOM05D001200 ORTHO05D009778 1.4e-16 89.7 52 90.4
BolSC29t60546H Brassica oleracea HOM05D001200 ORTHO05D009778 1.4e-16 89.7 52 90.4
Eucgr.L00013 Eucalyptus grandis HOM05D001200 ORTHO05D009778 1.4e-16 89.7 102 60.8
BolSC35t60692H Brassica oleracea HOM05D001200 ORTHO05D009778 5.2e-16 87.8 51 90.2
Phvul.011G095700 Phaseolus vulgaris HOM05D001200 ORTHO05D009778 5.2e-16 87.8 77 71.4
BolSC49t61143H Brassica oleracea HOM05D001200 ORTHO05D009778 3.4e-15 85.1 53 88.7
Lsat_1_v5_gn_1_14180 Lactuca sativa HOM05D001200 ORTHO05D009713 4.4e-15 84.7 48 97.9
BraSC143t45660Z Brassica rapa HOM05D001200 ORTHO05D009778 5.8e-15 84.3 51 88.2
MBI16_g21734_MAGBIO Magnolia biondii HOM05D001200 ORTHO05D009778 7.0e-13 77.4 52 78.8
SMO086G0019 Selaginella moellendorffii HOM05D001200 ORTHO05D009778 9.2e-13 77.0 100 50.0
Oeu019750.1 Olea europaea HOM05D001200 ORTHO05D009778 8.6e-11 70.5 41 85.4
BraSC25t45910Z Brassica rapa HOM05D001200 ORTHO05D009778 1.8e-08 62.8 41 80.5
A05p21340 Brassica napus HOM05D000001 ORTHO05D024436 7.5e-07 57.4 43 62.8
CANSAT16G0035 Cannabis sativa HOM05D008204 ORTHO05D010378 9.8e-07 57.0 89 41.6
Sed0011989 Sechium edule HOM05D008204 ORTHO05D010378 9.8e-07 57.0 89 41.6
Sed0024014 Sechium edule HOM05D008204 ORTHO05D010378 9.8e-07 57.0 89 41.6
C05p35930 Brassica napus HOM05D000001 ORTHO05D024436 1.3e-06 56.6 32 81.2


User provided reference genes

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