Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR111G0018 Punica granatum HOM05D007549 ORTHO05D009532 6.4e-34 146.7 69 100.0
Gohir.1Z050480 Gossypium hirsutum HOM05D007549 ORTHO05D009532 1.1e-28 129.4 69 89.9
Gohir.A09G103600 Gossypium hirsutum HOM05D007549 ORTHO05D009532 1.1e-28 129.4 69 89.9
Gohir.D02G088100 Gossypium hirsutum HOM05D007549 ORTHO05D009532 5.2e-28 127.1 69 88.4
Gohir.D12G108000 Gossypium hirsutum HOM05D007549 ORTHO05D009532 8.9e-28 126.3 69 88.4
Ciclev10033989m.g Citrus clementina HOM05D007549 ORTHO05D009532 2.0e-27 125.2 69 87.0
Nn021s41532 Nelumbo nucifera HOM05D007549 ORTHO05D009532 2.0e-27 125.2 69 87.0
RcHm_v2.0_CPg0502021 Rosa chinensis HOM05D007549 ORTHO05D009532 3.4e-27 124.4 69 88.4
Sed0011532 Sechium edule HOM05D007549 ORTHO05D009532 3.4e-27 124.4 69 88.4
Sed0017373 Sechium edule HOM05D007549 ORTHO05D009532 3.4e-27 124.4 69 88.4
Sed0021629 Sechium edule HOM05D007549 ORTHO05D009532 3.4e-27 124.4 69 88.4
Sed0025178 Sechium edule HOM05D007549 ORTHO05D009532 3.4e-27 124.4 69 88.4
EL10As12g24029 Beta vulgaris HOM05D007549 ORTHO05D009532 5.8e-27 123.6 69 85.5
EL10As15g24130 Beta vulgaris HOM05D007549 ORTHO05D009532 5.8e-27 123.6 69 85.5
CARHR282150 Cardamine hirsuta HOM05D007549 ORTHO05D009532 5.8e-27 123.6 69 84.1
A06p23130 Brassica napus HOM05D007549 ORTHO05D009532 7.6e-27 123.2 69 84.1
BNapus_Darmor_BZH_scaffold_253p00240 Brassica napus HOM05D007549 ORTHO05D009532 7.6e-27 123.2 69 84.1
BNapus_Darmor_BZH_scaffold_287p00180 Brassica napus HOM05D007549 ORTHO05D009532 7.6e-27 123.2 69 84.1
C02p43570 Brassica napus HOM05D007549 ORTHO05D009532 7.6e-27 123.2 69 84.1
C06p22970 Brassica napus HOM05D007549 ORTHO05D009532 7.6e-27 123.2 69 84.1
C06p23020 Brassica napus HOM05D007549 ORTHO05D009532 7.6e-27 123.2 69 84.1
BolC8t52432H Brassica oleracea HOM05D007549 ORTHO05D009532 7.6e-27 123.2 69 84.1
BolSC29t60475H Brassica oleracea HOM05D007549 ORTHO05D009532 7.6e-27 123.2 69 84.1
BolSC29t60596H Brassica oleracea HOM05D007549 ORTHO05D009532 7.6e-27 123.2 69 84.1
BolSC35t60656H Brassica oleracea HOM05D007549 ORTHO05D009532 7.6e-27 123.2 69 84.1
BolSC35t60741H Brassica oleracea HOM05D007549 ORTHO05D009532 7.6e-27 123.2 69 84.1
BolSC47t61088H Brassica oleracea HOM05D007549 ORTHO05D009532 7.6e-27 123.2 69 84.1
BraA06t25416Z Brassica rapa HOM05D007549 ORTHO05D009532 7.6e-27 123.2 69 84.1
BraSC25t45857Z Brassica rapa HOM05D007549 ORTHO05D009532 7.6e-27 123.2 69 84.1
Gohir.A10G214800 Gossypium hirsutum HOM05D007549 ORTHO05D009532 7.6e-27 123.2 69 85.5
MELO3C001514.2 Cucumis melo HOM05D007549 ORTHO05D009532 9.9e-27 122.9 69 87.0
DCAR_032505 Daucus carota HOM05D007549 ORTHO05D009532 1.3e-26 122.5 69 82.6
HanXRQChr00c0314g0573541 Helianthus annuus HOM05D007549 ORTHO05D009532 1.3e-26 122.5 69 84.1
HanXRQChr01g0020311 Helianthus annuus HOM05D007549 ORTHO05D009532 1.3e-26 122.5 69 84.1
HanXRQChr02g0041601 Helianthus annuus HOM05D007549 ORTHO05D009532 1.3e-26 122.5 69 84.1
HanXRQChr02g0044861 Helianthus annuus HOM05D007549 ORTHO05D009532 1.3e-26 122.5 69 84.1
HanXRQChr10g0284281 Helianthus annuus HOM05D007549 ORTHO05D009532 1.3e-26 122.5 69 84.1
HanXRQChr10g0289301 Helianthus annuus HOM05D007549 ORTHO05D009532 1.3e-26 122.5 69 84.1
HanXRQChr10g0318161 Helianthus annuus HOM05D007549 ORTHO05D009532 1.3e-26 122.5 69 84.1
HanXRQChr11g0326871 Helianthus annuus HOM05D007549 ORTHO05D009532 1.3e-26 122.5 69 84.1
HanXRQChr11g0345191 Helianthus annuus HOM05D007549 ORTHO05D009532 1.3e-26 122.5 69 84.1
HanXRQCPg0580081 Helianthus annuus HOM05D007549 ORTHO05D009532 1.3e-26 122.5 69 84.1
ATCG00640 Arabidopsis thaliana HOM05D007549 ORTHO05D009532 1.7e-26 122.1 69 82.6
CsaV3_7G024610 Cucumis sativus L. HOM05D007549 ORTHO05D009532 2.2e-26 121.7 69 85.5
BolC9t53163H Brassica oleracea HOM05D007549 ORTHO05D009532 2.9e-26 121.3 69 84.1
AL2G21610 Arabidopsis lyrata HOM05D007549 ORTHO05D009532 3.8e-26 120.9 69 82.6
BolSC49t61174H Brassica oleracea HOM05D007549 ORTHO05D009532 3.8e-26 120.9 69 82.6
HanXRQChr04g0095131 Helianthus annuus HOM05D007549 ORTHO05D009532 3.8e-26 120.9 69 82.6
Gohir.A06G124600 Gossypium hirsutum HOM05D007549 ORTHO05D009532 6.4e-26 120.2 69 84.1
Solyc09g064410.1 Solanum lycopersicum HOM05D007549 ORTHO05D009532 6.4e-26 120.2 69 84.1
Potri.003G067400 Populus trichocarpa HOM05D007549 ORTHO05D009532 8.4e-26 119.8 69 82.6
BolC2t08912H Brassica oleracea HOM05D007549 ORTHO05D009532 1.1e-25 119.4 69 82.6
BolC6t36197H Brassica oleracea HOM05D007549 ORTHO05D009532 1.1e-25 119.4 69 81.2
CAN.G1148.11 Capsicum annuum HOM05D007549 ORTHO05D009532 1.1e-25 119.4 69 84.1
CAN.G1314.5 Capsicum annuum HOM05D007549 ORTHO05D009532 1.1e-25 119.4 69 84.1
CAN.G2018.15 Capsicum annuum HOM05D007549 ORTHO05D009532 1.1e-25 119.4 69 84.1
CAN.G2018.7 Capsicum annuum HOM05D007549 ORTHO05D009532 1.1e-25 119.4 69 84.1
CAN.G438.85 Capsicum annuum HOM05D007549 ORTHO05D009532 1.1e-25 119.4 69 84.1
BraSC138t45567Z Brassica rapa HOM05D007549 ORTHO05D009532 2.4e-25 118.2 67 82.1
PSO548G0033 Papaver somniferum HOM05D007549 ORTHO05D009532 3.2e-25 117.9 69 81.2
CAN.G3365.3 Capsicum annuum HOM05D007549 ORTHO05D009532 4.1e-25 117.5 69 81.2
CAN.G452.5 Capsicum annuum HOM05D007549 ORTHO05D009532 2.1e-24 115.2 69 82.6
ClCG11G009530 Citrullus lanatus HOM05D007549 ORTHO05D009532 2.1e-24 115.2 64 85.9
HanXRQChr02g0052591 Helianthus annuus HOM05D007549 ORTHO05D009532 2.1e-24 115.2 69 79.7
HanXRQChr00c0339g0573821 Helianthus annuus HOM05D007549 ORTHO05D009532 2.7e-24 114.8 64 82.8
HanXRQChr10g0283591 Helianthus annuus HOM05D007549 ORTHO05D009532 2.7e-24 114.8 64 82.8
BraSC58t46491Z Brassica rapa HOM05D007549 ORTHO05D009532 6.0e-24 113.6 64 82.8
Lalb_Chr07g0192081 Lupinus albus HOM05D007549 ORTHO05D009532 3.9e-23 110.9 69 76.8
Lalb_Chr20g0115511 Lupinus albus HOM05D007549 ORTHO05D009532 3.9e-23 110.9 69 76.8
Glyma.15G239000 Glycine max HOM05D007549 ORTHO05D009532 5.1e-23 110.5 69 76.8
Glyma.12G232300 Glycine max HOM05D007549 ORTHO05D009532 8.6e-23 109.8 69 78.3
Oeu062831.1 Olea europaea HOM05D007549 ORTHO05D009532 1.5e-22 109.0 69 78.3
Lj1g0000802 Lotus japonicus HOM05D007549 ORTHO05D009532 3.3e-22 107.8 69 76.8
LjContig00318g0016693 Lotus japonicus HOM05D007549 ORTHO05D009532 3.3e-22 107.8 69 76.8
Lj5g0014355 Lotus japonicus HOM05D007549 ORTHO05D009532 4.3e-22 107.5 69 76.8
Medtr4g051350 Medicago truncatula HOM05D004570 ORTHO05D009532 1.6e-21 105.5 63 76.2
ClCG02G007770 Citrullus lanatus HOM05D007549 ORTHO05D009532 8.1e-21 103.2 69 76.8
Medtr8g045210 Medicago truncatula HOM05D007549 ORTHO05D009532 8.1e-21 103.2 64 73.4
Gohir.D11G296624 Gossypium hirsutum HOM05D007549 ORTHO05D009532 1.1e-20 102.8 69 75.4
Gorai.007G320000 Gossypium raimondii HOM05D007549 ORTHO05D009532 1.1e-20 102.8 69 75.4
HanXRQChr11g0331601 Helianthus annuus HOM05D007549 ORTHO05D009532 2.0e-19 98.6 68 69.1
HanXRQChr16g0529021 Helianthus annuus HOM05D007549 ORTHO05D009532 4.4e-19 97.4 46 95.7
BolC4t25867H Brassica oleracea HOM05D007549 ORTHO05D009532 9.9e-19 96.3 58 77.6
Gohir.D07G173850 Gossypium hirsutum HOM05D007549 ORTHO05D009532 3.8e-18 94.4 69 65.2
arahy.Tifrunner.gnm1.ann1.JD40MT Arachis hypogaea HOM05D007549 ORTHO05D009532 6.4e-18 93.6 61 73.8
Lalb_Chr23g0274441 Lupinus albus HOM05D007549 ORTHO05D009532 8.4e-18 93.2 69 68.1
Gorai.001G194300 Gossypium raimondii HOM05D007549 ORTHO05D009532 1.9e-17 92.0 69 63.8
Gorai.010G129600 Gossypium raimondii HOM05D007549 ORTHO05D009532 6.0e-16 87.0 69 66.7
HanXRQChr00c0557g0575791 Helianthus annuus HOM05D007549 ORTHO05D009532 3.9e-15 84.3 53 77.4
TPR.G34467 Trifolium pratense HOM05D007549 ORTHO05D009532 1.9e-14 82.0 46 80.4
Gohir.D11G284350 Gossypium hirsutum HOM05D007549 ORTHO05D009532 3.3e-14 81.3 69 65.2
Gohir.D06G113650 Gossypium hirsutum HOM05D007549 ORTHO05D009532 5.6e-14 80.5 69 63.8
Lalb_Chr23g0274351 Lupinus albus HOM05D007549 ORTHO05D009532 3.6e-13 77.8 52 73.1
Hund31442 Selenicereus undatus HOM05D007549 ORTHO05D009532 1.4e-12 75.9 55 70.9
Gohir.A07G175856 Gossypium hirsutum HOM05D007549 ORTHO05D009532 1.8e-12 75.5 69 60.9
MCO12G297 Micromonas commoda HOM05D007549 ORTHO05D009532 1.5e-11 72.4 68 55.9
PRCOL_00001223 Prasinoderma coloniale HOM05D007549 ORTHO05D009532 2.9e-10 68.2 68 52.9
Cre10.g462950 Chlamydomonas reinhardtii HOM05D007549 ORTHO05D009532 2.1e-08 62.0 67 50.7
BraSC58t46430Z Brassica rapa HOM05D007549 ORTHO05D009532 1.8e-07 58.9 39 74.4
Nitab4.5_0011882g0050 Nicotiana tabacum HOM05D008505 ORTHO05D010735 6.7e-07 57.0 40 75.0


User provided reference genes

Program Settings