Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR111G0009 Punica granatum HOM05D000388 ORTHO05D009843 3.2e-50 201.4 101 100.0
Gohir.D08G129080 Gossypium hirsutum HOM05D000388 ORTHO05D009843 8.7e-48 193.4 101 96.0
RcHm_v2.0_CPg0502271 Rosa chinensis HOM05D000388 ORTHO05D009843 3.3e-47 191.4 101 95.0
Nn020s41509 Nelumbo nucifera HOM05D000388 ORTHO05D009843 1.3e-46 189.5 101 94.1
Nn055s41931 Nelumbo nucifera HOM05D000388 ORTHO05D009843 1.3e-46 189.5 101 94.1
Nn082s42681 Nelumbo nucifera HOM05D000388 ORTHO05D009843 1.3e-46 189.5 101 94.1
Nn287s46145 Nelumbo nucifera HOM05D000388 ORTHO05D009843 1.3e-46 189.5 101 94.1
RcHm_v2.0_Chr3g0491801 Rosa chinensis HOM05D000388 ORTHO05D009843 1.3e-46 189.5 101 93.1
BcaC04g20699 Brassica carinata HOM05D000388 ORTHO05D009843 1.6e-46 189.1 101 93.1
LjContig00318g0006350 Lotus japonicus HOM05D000388 ORTHO05D009843 1.6e-46 189.1 101 94.1
Migut.D01348 Erythranthe guttata HOM05D000388 ORTHO05D009843 2.8e-46 188.3 101 93.1
Migut.J01359 Erythranthe guttata HOM05D000388 ORTHO05D009843 2.8e-46 188.3 101 93.1
Lalb_Chr23g0270511 Lupinus albus HOM05D000388 ORTHO05D009843 3.7e-46 188.0 101 93.1
CARHR281990 Cardamine hirsuta HOM05D000388 ORTHO05D009843 4.8e-46 187.6 101 92.1
Hma1.2p1_0051F.1_g029490 Hydrangea macrophylla HOM05D000388 ORTHO05D009843 6.2e-46 187.2 101 93.1
Sed0009296 Sechium edule HOM05D000388 ORTHO05D009843 6.2e-46 187.2 101 93.1
Sed0020360 Sechium edule HOM05D000388 ORTHO05D009843 6.2e-46 187.2 101 93.1
Gohir.A03G019500 Gossypium hirsutum HOM05D000388 ORTHO05D009843 1.1e-45 186.4 101 93.1
AL2G20790 Arabidopsis lyrata HOM05D000388 ORTHO05D009843 1.4e-45 186.0 101 92.1
ATCG00330 Arabidopsis thaliana HOM05D000388 ORTHO05D009843 1.4e-45 186.0 101 92.1
Potri.013G142336 Populus trichocarpa HOM05D000388 ORTHO05D009843 3.1e-45 184.9 101 92.1
BNapus_Darmor_BZH_scaffold_253p00110 Brassica napus HOM05D000388 ORTHO05D009843 6.9e-45 183.7 101 91.1
BNapus_Darmor_BZH_scaffold_287p00030 Brassica napus HOM05D000388 ORTHO05D000473 6.9e-45 183.7 101 91.1
C09p40130 Brassica napus HOM05D000388 ORTHO05D009843 6.9e-45 183.7 101 91.1
BolC7t41727H Brassica oleracea HOM05D000388 ORTHO05D000473 6.9e-45 183.7 101 91.1
BolSC29t60455H Brassica oleracea HOM05D000388 ORTHO05D000473 6.9e-45 183.7 101 91.1
BolSC45t60943H Brassica oleracea HOM05D000388 ORTHO05D000473 6.9e-45 183.7 101 91.1
BolSC46t60990H Brassica oleracea HOM05D000388 ORTHO05D000473 6.9e-45 183.7 101 91.1
BraSC140t45581Z Brassica rapa HOM05D000388 ORTHO05D000473 6.9e-45 183.7 101 91.1
BraSC151t45706Z Brassica rapa HOM05D000388 ORTHO05D009843 6.9e-45 183.7 101 91.1
BraSC179t45796Z Brassica rapa HOM05D000388 ORTHO05D000473 6.9e-45 183.7 101 91.1
CAN.G142.10 Capsicum annuum HOM05D000388 ORTHO05D009843 9.0e-45 183.3 101 91.1
CAN.G500.81 Capsicum annuum HOM05D000388 ORTHO05D009843 9.0e-45 183.3 101 91.1
CAN.G653.5 Capsicum annuum HOM05D000388 ORTHO05D009843 9.0e-45 183.3 101 91.1
HanXRQChr00c0272g0573001 Helianthus annuus HOM05D000388 ORTHO05D009843 9.0e-45 183.3 101 91.1
HanXRQChr00c0439g0574751 Helianthus annuus HOM05D000388 ORTHO05D009843 9.0e-45 183.3 101 91.1
HanXRQChr02g0041691 Helianthus annuus HOM05D000388 ORTHO05D009843 9.0e-45 183.3 101 91.1
HanXRQChr04g0099341 Helianthus annuus HOM05D000388 ORTHO05D009843 9.0e-45 183.3 101 91.1
HanXRQChr05g0151391 Helianthus annuus HOM05D000388 ORTHO05D009843 9.0e-45 183.3 101 91.1
HanXRQChr07g0201051 Helianthus annuus HOM05D000388 ORTHO05D009843 9.0e-45 183.3 101 91.1
HanXRQChr08g0210251 Helianthus annuus HOM05D000388 ORTHO05D009843 9.0e-45 183.3 101 91.1
HanXRQChr10g0282451 Helianthus annuus HOM05D000388 ORTHO05D009843 9.0e-45 183.3 101 91.1
HanXRQChr11g0326691 Helianthus annuus HOM05D000388 ORTHO05D009843 9.0e-45 183.3 101 91.1
HanXRQCPg0579911 Helianthus annuus HOM05D000388 ORTHO05D009843 9.0e-45 183.3 101 91.1
Gohir.A05G086166 Gossypium hirsutum HOM05D000388 ORTHO05D009843 2.0e-44 182.2 101 92.1
Thhalv10011029m.g Eutrema salsugineum HOM05D000388 ORTHO05D009843 5.8e-44 180.6 101 91.1
Solyc00g500055.1 Solanum lycopersicum HOM05D000388 ORTHO05D009843 1.0e-43 179.9 99 91.9
Solyc00g500137.1 Solanum lycopersicum HOM05D000388 ORTHO05D009843 1.0e-43 179.9 99 91.9
Solyc00g500207.1 Solanum lycopersicum HOM05D000388 ORTHO05D009843 1.0e-43 179.9 99 91.9
DCAR_032482 Daucus carota HOM05D000388 ORTHO05D009843 6.5e-43 177.2 101 89.1
PSO548G0009 Papaver somniferum HOM05D000388 ORTHO05D009843 6.5e-43 177.2 101 88.1
AL2G21360 Arabidopsis lyrata HOM05D000388 ORTHO05D009843 3.2e-42 174.9 99 89.9
TWI15G0535 Tripterygium wilfordii HOM05D000388 ORTHO05D009843 9.3e-42 173.3 101 87.1
Gohir.A01G140300 Gossypium hirsutum HOM05D000388 ORTHO05D009843 2.7e-41 171.8 101 86.1
Gohir.D09G055500 Gossypium hirsutum HOM05D000388 ORTHO05D009843 2.7e-41 171.8 101 86.1
A06p23300 Brassica napus HOM05D000388 ORTHO05D000473 4.6e-41 171.0 97 87.6
arahy.Tifrunner.gnm1.ann1.6B1C4L Arachis hypogaea HOM05D000388 ORTHO05D009843 1.0e-40 169.9 98 87.8
BolC9t56909H Brassica oleracea HOM05D000388 ORTHO05D009843 1.8e-40 169.1 94 90.4
CAN.G679.7 Capsicum annuum HOM05D000388 ORTHO05D009843 8.7e-40 166.8 101 84.2
Sed0021792 Sechium edule HOM05D000388 ORTHO05D009843 1.5e-39 166.0 101 84.2
CiPaw.10G111400 Carya illinoinensis HOM05D000388 ORTHO05D009843 1.9e-39 165.6 88 92.0
Gohir.A01G164720 Gossypium hirsutum HOM05D000388 ORTHO05D009843 2.5e-39 165.2 100 87.0
EL10Ac1g02280 Beta vulgaris HOM05D000388 ORTHO05D009843 5.7e-39 164.1 101 85.1
Medtr3g035610 Medicago truncatula HOM05D000388 ORTHO05D009843 5.7e-39 164.1 101 84.2
LjContig00489g0027265 Lotus japonicus HOM05D000388 ORTHO05D009843 1.8e-37 159.1 93 84.9
TAR629G1277 Trochodendron aralioides HOM05D000388 ORTHO05D009843 6.9e-37 157.1 86 93.0
Oeu017222.1 Olea europaea HOM05D000388 ORTHO05D009843 2.0e-36 155.6 101 80.2
Oeu062844.1 Olea europaea HOM05D000388 ORTHO05D009843 4.5e-36 154.5 99 79.8
Eucgr.C02020 Eucalyptus grandis HOM05D000388 ORTHO05D009843 1.0e-35 153.3 93 86.0
Nitab4.5_0025922g0010 Nicotiana tabacum HOM05D000388 ORTHO05D009843 1.7e-35 152.5 86 90.7
Nitab4.5_0007186g0040 Nicotiana tabacum HOM05D000388 ORTHO05D009843 2.5e-34 148.7 86 88.4
SEGI_01256 Sequoiadendron giganteum HOM05D000388 ORTHO05D009843 2.5e-34 148.7 101 74.3
BolSC44t60854H Brassica oleracea HOM05D000388 ORTHO05D009843 2.5e-31 138.7 94 74.5
CAN.G386.18 Capsicum annuum HOM05D000388 ORTHO05D000473 7.4e-31 137.1 74 87.8
CSS0013534 Camellia sinensis var. sinensis HOM05D000388 ORTHO05D009843 3.7e-30 134.8 79 88.6
Peaxi162Scf00575g00006 Petunia axillaris HOM05D000388 ORTHO05D009843 6.3e-30 134.0 70 90.0
arahy.Tifrunner.gnm1.ann1.FC7Y3W Arachis hypogaea HOM05D000388 ORTHO05D009843 1.2e-28 129.8 72 87.5
Peaxi162Scf00455g00046 Petunia axillaris HOM05D000388 ORTHO05D009843 1.2e-28 129.8 76 86.8
Gohir.A07G155821 Gossypium hirsutum HOM05D000388 ORTHO05D009843 2.6e-28 128.6 72 91.7
Hund28396 Selenicereus undatus HOM05D000388 ORTHO05D009843 2.6e-28 128.6 74 86.5
SMO086G0040 Selaginella moellendorffii HOM05D000388 ORTHO05D009843 6.5e-27 124.0 99 62.6
HanXRQChr00c0345g0573851 Helianthus annuus HOM05D000388 ORTHO05D009843 3.0e-24 115.2 56 96.4
EL10As15g24141 Beta vulgaris HOM05D000388 ORTHO05D009843 1.7e-22 109.4 64 89.1
Nitab4.5_0002607g0050 Nicotiana tabacum HOM05D000388 ORTHO05D009843 1.3e-19 99.8 62 85.5
EL10As28g24250 Beta vulgaris HOM05D000388 ORTHO05D000473 5.0e-19 97.8 56 83.9
Phvul.010G068900 Phaseolus vulgaris HOM05D000388 ORTHO05D009843 1.9e-18 95.9 48 91.7
HanXRQChr16g0506261 Helianthus annuus HOM05D000388 ORTHO05D009843 4.7e-17 91.3 57 84.2
CsaV3_6G032160 Cucumis sativus L. HOM05D000388 ORTHO05D009843 1.4e-16 89.7 91 61.5
Medtr5g063380 Medicago truncatula HOM05D000388 ORTHO05D009843 5.1e-16 87.8 48 87.5
Medtr8g079770 Medicago truncatula HOM05D000388 ORTHO05D009843 4.5e-12 74.7 51 78.4
Hund29903 Selenicereus undatus HOM05D000388 ORTHO05D009843 1.0e-11 73.6 51 80.4
arahy.Tifrunner.gnm1.ann1.A3NG1I Arachis hypogaea HOM05D000388 ORTHO05D009843 5.0e-11 71.2 95 48.4
arahy.Tifrunner.gnm1.ann1.90KAHV Arachis hypogaea HOM05D000388 ORTHO05D009843 4.2e-10 68.2 97 50.5
Sopen10g013070 Solanum pennellii HOM05D000388 ORTHO05D009843 4.2e-10 68.2 33 90.9
EL10Ac3g05283 Beta vulgaris HOM05D007099 ORTHO05D009081 1.4e-08 63.2 92 46.7
Hund03588 Selenicereus undatus HOM05D007099 ORTHO05D009081 2.0e-07 59.3 92 42.4
Hund07474 Selenicereus undatus HOM05D007099 ORTHO05D009081 2.0e-07 59.3 92 42.4
BolC9t56932H Brassica oleracea HOM05D000388 ORTHO05D009843 3.3e-07 58.5 27 96.3
AUR62006089 Chenopodium quinoa HOM05D007099 ORTHO05D009081 3.3e-07 58.5 91 44.0
AUR62019404 Chenopodium quinoa HOM05D007099 ORTHO05D009081 3.3e-07 58.5 91 44.0
Aqoxy12s037 Aquilegia oxysepala HOM05D007099 ORTHO05D009081 5.7e-07 57.8 95 44.2
CsaV3_2G032930 Cucumis sativus L. HOM05D007099 ORTHO05D009081 9.7e-07 57.0 91 40.7
Sed0026927 Sechium edule HOM05D007099 ORTHO05D009081 1.3e-06 56.6 91 40.7
Lj2P1221T100 Lonicera japonica HOM05D007099 ORTHO05D009081 1.7e-06 56.2 95 42.1
MELO3C019879.2 Cucumis melo HOM05D007099 ORTHO05D009081 2.8e-06 55.5 91 39.6
Manes.15G073400 Manihot esculenta HOM05D007099 ORTHO05D009081 2.8e-06 55.5 88 39.8
Potri.001G424950 Populus trichocarpa HOM05D007099 ORTHO05D009081 2.8e-06 55.5 95 37.9
arahy.Tifrunner.gnm1.ann1.EPB7VR Arachis hypogaea HOM05D000176 ORTHO05D000106 3.7e-06 55.1 27 88.9
CAN.G371.64 Capsicum annuum HOM05D007099 ORTHO05D009081 3.7e-06 55.1 94 38.3
Zm00001eb261270 Zea mays HOM05D002252 ORTHO05D002451 3.7e-06 55.1 95 38.9
Atru.chr1.3070 Acer truncatum HOM05D007099 ORTHO05D009081 4.8e-06 54.7 95 37.9
Atru.chr3.1047 Acer truncatum HOM05D007099 ORTHO05D009081 4.8e-06 54.7 95 37.9
ClCG08G008070 Citrullus lanatus HOM05D007099 ORTHO05D009081 4.8e-06 54.7 90 38.9
Sabra16G0287600 Salix brachista HOM05D007099 ORTHO05D009081 4.8e-06 54.7 95 37.9
Solyc04g079380.1 Solanum lycopersicum HOM05D007099 ORTHO05D009081 4.8e-06 54.7 94 38.3
Sopen04g032990 Solanum pennellii HOM05D007099 ORTHO05D009081 4.8e-06 54.7 94 38.3
PGSC0003DMG400007997 Solanum tuberosum HOM05D007099 ORTHO05D009081 4.8e-06 54.7 94 38.3
MD07G1070600 Malus domestica HOM05D007099 ORTHO05D009081 6.3e-06 54.3 95 38.9
Ah.07g205590 Amaranthus hybridus HOM05D007099 ORTHO05D009081 8.2e-06 53.9 90 42.2
ECA234G1703 Erigeron canadensis HOM05D007099 ORTHO05D009081 8.2e-06 53.9 95 38.9
MD07G1069700 Malus domestica HOM05D007099 ORTHO05D009081 8.2e-06 53.9 94 38.3
Nitab4.5_0000068g0330 Nicotiana tabacum HOM05D007099 ORTHO05D009081 8.2e-06 53.9 93 37.6
Nitab4.5_0012613g0010 Nicotiana tabacum HOM05D007099 ORTHO05D009081 8.2e-06 53.9 93 37.6
SalBow8G2603 Salvia bowleyana HOM05D007099 ORTHO05D009081 8.2e-06 53.9 94 37.2
VMungo0647G1684 Vigna mungo HOM05D007099 ORTHO05D009081 8.2e-06 53.9 95 40.0


User provided reference genes

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