Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR102G3363 Punica granatum HOM05D005294 ORTHO05D006720 1.4e-265 919.1 466 100.0
Eucgr.C03688 Eucalyptus grandis HOM05D005294 ORTHO05D006720 2.6e-195 685.6 465 72.9
Haze_25869 Corylus avellana HOM05D005294 ORTHO05D006720 1.7e-175 619.8 462 63.4
Atru.chr7.1522 Acer truncatum HOM05D005294 ORTHO05D006720 2.5e-174 615.9 462 62.3
QL02p063470 Quercus lobata HOM05D005294 ORTHO05D006720 4.7e-173 611.7 462 62.3
COL.COLO4_18242 Corchorus olitorius HOM05D005294 ORTHO05D006720 6.2e-173 611.3 467 64.2
Gohir.D06G069100 Gossypium hirsutum HOM05D005294 ORTHO05D006720 1.2e-171 607.1 466 64.6
Gorai.010G080700 Gossypium raimondii HOM05D005294 ORTHO05D006720 1.2e-171 607.1 466 64.6
CiPaw.03G219800 Carya illinoinensis HOM05D005294 ORTHO05D006720 4.4e-171 605.1 463 62.2
Gohir.A06G070500 Gossypium hirsutum HOM05D005294 ORTHO05D006720 7.6e-171 604.4 466 64.4
Manes.16G105100 Manihot esculenta HOM05D005294 ORTHO05D006720 4.9e-170 601.7 461 61.0
Ciclev10008203m.g Citrus clementina HOM05D005294 ORTHO05D006720 6.4e-170 601.3 464 60.8
Potri.013G068200 Populus trichocarpa HOM05D005294 ORTHO05D006720 8.3e-170 600.9 461 62.3
TWI34G0876 Tripterygium wilfordii HOM05D005294 ORTHO05D006720 1.9e-169 599.7 462 62.1
Thecc.09G094300 Theobroma cacao HOM05D005294 ORTHO05D006720 2.4e-169 599.4 450 65.1
Duzib168G2227 Durio zibethinus HOM05D005294 ORTHO05D006720 5.4e-169 598.2 449 64.4
TWI63G0491 Tripterygium wilfordii HOM05D005294 ORTHO05D006720 3.5e-168 595.5 463 62.2
Prupe.7G214700 Prunus persica HOM05D005294 ORTHO05D006720 4.6e-168 595.1 464 62.3
Cfa003134 Carpinus fangiana HOM05D005294 ORTHO05D006720 1.9e-166 589.7 462 60.8
GSVIVG01015248001 Vitis vinifera HOM05D005294 ORTHO05D006720 1.2e-165 587.0 462 63.4
Dinv36732 Davidia involucrata HOM05D005294 ORTHO05D006720 1.6e-165 586.6 458 61.1
Sabra13G0059500 Salix brachista HOM05D005294 ORTHO05D006720 3.4e-163 578.9 513 55.9
MD15G1202500 Malus domestica HOM05D005294 ORTHO05D006720 4.4e-163 578.6 464 58.8
CSS0007070 Camellia sinensis var. sinensis HOM05D005294 ORTHO05D006720 1.7e-162 576.6 457 59.1
RcHm_v2.0_Chr2g0092581 Rosa chinensis HOM05D005294 ORTHO05D006720 2.2e-162 576.2 464 60.8
MD02G1072700 Malus domestica HOM05D005294 ORTHO05D006720 3.8e-162 575.5 464 59.3
Cpa.g.sc32.101 Carica papaya HOM05D005294 ORTHO05D006720 2.4e-161 572.8 460 58.9
CSS0004577 Camellia sinensis var. sinensis HOM05D005294 ORTHO05D006720 5.4e-161 571.6 457 58.6
CANSAT64G1758 Cannabis sativa HOM05D005294 ORTHO05D006720 3.5e-160 568.9 464 58.8
Lj7C671G8 Lonicera japonica HOM05D005294 ORTHO05D006720 1.3e-159 567.0 459 58.4
Lalb_Chr18g0053011 Lupinus albus HOM05D005294 ORTHO05D006720 3.0e-159 565.8 465 58.1
LjContig00141g0021499 Lotus japonicus HOM05D005294 ORTHO05D006720 2.5e-158 562.8 462 56.9
FvH4_1g06810 Fragaria vesca HOM05D005294 ORTHO05D006720 3.6e-157 558.9 464 59.9
FAN26G2354 Fragaria x ananassa HOM05D005294 ORTHO05D006720 9.0e-156 554.3 461 60.1
TAR624G1381 Trochodendron aralioides HOM05D005294 ORTHO05D006720 2.0e-155 553.1 455 58.5
ClCG11G001870 Citrullus lanatus HOM05D005294 ORTHO05D006720 4.4e-155 552.0 463 58.5
CsaV3_2G001600 Cucumis sativus L. HOM05D005294 ORTHO05D006720 2.2e-154 549.7 463 58.3
arahy.Tifrunner.gnm1.ann1.T94LMP Arachis hypogaea HOM05D005294 ORTHO05D006720 3.8e-154 548.9 466 56.7
Actinidia39748 Actinidia chinensis HOM05D005294 ORTHO05D006720 6.4e-154 548.1 461 57.5
arahy.Tifrunner.gnm1.ann1.CWN4E9 Arachis hypogaea HOM05D005294 ORTHO05D006720 6.4e-154 548.1 466 56.2
Glyma.14G065800 Glycine max HOM05D005294 ORTHO05D006720 6.4e-154 548.1 462 56.5
Phvul.008G230500 Phaseolus vulgaris HOM05D005294 ORTHO05D006720 8.4e-154 547.7 463 56.2
Rhsim05G0031400 Rhododendron simsii HOM05D005294 ORTHO05D006720 8.4e-154 547.7 461 56.8
Lalb_Chr15g0084501 Lupinus albus HOM05D005294 ORTHO05D006720 2.4e-153 546.2 456 57.0
Nitab4.5_0004011g0060 Nicotiana tabacum HOM05D005294 ORTHO05D006720 3.2e-153 545.8 463 57.7
AL8G32570 Arabidopsis lyrata HOM05D005294 ORTHO05D006720 1.2e-152 543.9 465 57.8
FAN23G1873 Fragaria x ananassa HOM05D005294 ORTHO05D006720 2.1e-152 543.1 464 58.6
Glyma.02G250900 Glycine max HOM05D005294 ORTHO05D006720 3.9e-151 538.9 462 55.8
Nitab4.5_0001492g0020 Nicotiana tabacum HOM05D005294 ORTHO05D006720 3.9e-151 538.9 462 57.4
Sed0020374 Sechium edule HOM05D005294 ORTHO05D006720 6.6e-151 538.1 463 58.3
PGSC0003DMG400033362 Solanum tuberosum HOM05D005294 ORTHO05D006720 1.9e-150 536.6 466 55.4
Sc08g0008210 Simmondsia chinensis HOM05D005294 ORTHO05D006720 1.3e-149 533.9 465 55.9
CARHR270490 Cardamine hirsuta HOM05D005294 ORTHO05D006720 1.6e-149 533.5 467 56.7
DCAR_012006 Daucus carota HOM05D005294 ORTHO05D006720 1.6e-149 533.5 463 54.9
Solyc02g068580.1 Solanum lycopersicum HOM05D005294 ORTHO05D006720 1.6e-149 533.5 467 57.2
Sopen02g017740 Solanum pennellii HOM05D005294 ORTHO05D006720 1.6e-149 533.5 466 57.1
AT5G56740 Arabidopsis thaliana HOM05D005294 ORTHO05D006720 2.8e-149 532.7 465 57.2
BcaC01g06444 Brassica carinata HOM05D005294 ORTHO05D006720 3.6e-149 532.3 466 56.0
BraA10t43499Z Brassica rapa HOM05D005294 ORTHO05D006720 3.6e-149 532.3 464 56.9
THA.LOC104811733 Tarenaya hassleriana HOM05D005294 ORTHO05D006720 8.1e-149 531.2 465 55.9
BolC3t13987H Brassica oleracea HOM05D005294 ORTHO05D006720 1.1e-148 530.8 467 56.3
C03p15490 Brassica napus HOM05D005294 ORTHO05D006720 1.4e-148 530.4 467 56.3
vmacro10822 Vaccinium macrocarpon HOM05D005294 ORTHO05D006720 1.8e-148 530.0 498 53.2
Carub.0008s1722 Capsella rubella HOM05D005294 ORTHO05D006720 2.4e-148 529.6 464 56.5
A10p14080 Brassica napus HOM05D005294 ORTHO05D006720 3.1e-148 529.3 464 56.7
BraA03t10634Z Brassica rapa HOM05D005294 ORTHO05D006720 3.1e-148 529.3 467 56.3
A03p13220 Brassica napus HOM05D005294 ORTHO05D006720 5.3e-148 528.5 467 56.1
Thhalv10013465m.g Eutrema salsugineum HOM05D005294 ORTHO05D006720 1.5e-147 526.9 466 56.2
Medtr5g080780 Medicago truncatula HOM05D005294 ORTHO05D006720 2.0e-147 526.6 464 54.7
BcaB01g04417 Brassica carinata HOM05D005294 ORTHO05D006720 4.5e-147 525.4 468 55.8
BcaB08g36064 Brassica carinata HOM05D005294 ORTHO05D006720 2.2e-146 523.1 469 55.7
CAN.G142.7 Capsicum annuum HOM05D005294 ORTHO05D006720 4.9e-146 521.9 467 54.8
TPR.G25848 Trifolium pratense HOM05D005294 ORTHO05D006720 1.9e-145 520.0 464 53.9
Hund05510 Selenicereus undatus HOM05D005294 ORTHO05D006720 6.0e-144 515.0 466 54.1
VMungo0647G0234 Vigna mungo HOM05D005294 ORTHO05D006720 1.0e-143 514.2 465 55.5
Lsat_1_v5_gn_5_146040 Lactuca sativa HOM05D005294 ORTHO05D006720 1.3e-143 513.8 464 53.9
FAN26G0700 Fragaria x ananassa HOM05D005294 ORTHO05D006720 6.7e-143 511.5 458 56.6
FAN19G0312 Fragaria x ananassa HOM05D005294 ORTHO05D006720 3.3e-142 509.2 431 58.2
Sp6g18490 Schrenkiella parvula HOM05D005294 ORTHO05D006720 4.3e-142 508.8 465 54.6
Psat2g038680 Pisum sativum HOM05D005294 ORTHO05D006720 2.1e-141 506.5 461 52.1
HanXRQChr12g0355321 Helianthus annuus HOM05D005294 ORTHO05D006720 4.8e-141 505.4 460 52.6
MSTRG.19532 Avicennia marina HOM05D005294 ORTHO05D006720 1.4e-140 503.8 461 52.9
PSO210G3043 Papaver somniferum HOM05D005294 ORTHO05D006720 3.1e-140 502.7 459 54.5
Aqoxy7G03926 Aquilegia oxysepala HOM05D005294 ORTHO05D006720 4.0e-140 502.3 464 54.5
PSO210G1233 Papaver somniferum HOM05D005294 ORTHO05D006720 4.0e-140 502.3 463 54.2
Cc06_g10960 Coffea canephora HOM05D005294 ORTHO05D006720 1.5e-139 500.4 439 55.4
Peaxi162Scf01468g00004 Petunia axillaris HOM05D005294 ORTHO05D006720 1.0e-138 497.7 462 54.8
ECA234G1346 Erigeron canadensis HOM05D005294 ORTHO05D006720 2.7e-136 489.6 462 51.7
Migut.J00438 Erythranthe guttata HOM05D005294 ORTHO05D006720 1.4e-132 477.2 463 49.2
MBI04_g06995_MAGBIO Magnolia biondii HOM05D005294 ORTHO05D006720 2.2e-130 469.9 464 50.6
SGA_v2.0_scaffold62G21576 Striga asiatica HOM05D005294 ORTHO05D006720 3.5e-128 462.6 494 48.8
Aa31LG3G12690 Aethionema arabicum HOM05D005294 ORTHO05D006720 6.1e-128 461.8 468 50.0
EL10Ac7g17721 Beta vulgaris HOM05D005294 ORTHO05D006720 8.7e-127 458.0 424 54.0
Ca_05904_v3 Cicer arietinum L. HOM05D005294 ORTHO05D006720 1.6e-125 453.8 422 51.4
Ah.15g091540 Amaranthus hybridus HOM05D005294 ORTHO05D006720 6.3e-125 451.8 466 49.1
AUR62008827 Chenopodium quinoa HOM05D005294 ORTHO05D006720 1.9e-121 440.3 466 48.3
AUR62025414 Chenopodium quinoa HOM05D005294 ORTHO05D006720 2.5e-121 439.9 466 48.7
Haze_25870 Corylus avellana HOM05D005294 ORTHO05D006720 7.2e-121 438.3 425 54.1
Aqoxy4G01946 Aquilegia oxysepala HOM05D005294 ORTHO05D006720 1.5e-118 430.6 437 49.7
HPP92_009085 Vanilla planifolia HOM05D005294 ORTHO05D006720 2.0e-118 430.3 459 47.1
BcaC04g20057 Brassica carinata HOM05D005294 ORTHO05D006720 5.7e-118 428.7 453 49.2
unitig_26.g9161 Utricularia gibba HOM05D005294 ORTHO05D006720 2.2e-117 426.8 494 44.9
Os09g0347800 Oryza sativa ssp. japonica HOM05D005294 ORTHO05D006720 8.2e-117 424.9 467 46.5
Zm00001eb310550 Zea mays HOM05D005294 ORTHO05D006720 5.5e-105 385.6 467 44.1
ATR0705G179 Amborella trichopoda HOM05D005294 ORTHO05D006720 5.9e-99 365.5 425 43.1
Nn6g35397 Nelumbo nucifera HOM05D005294 ORTHO05D006720 3.0e-95 353.2 292 55.8
BolC9t57681H Brassica oleracea HOM05D005294 ORTHO05D006720 7.0e-92 342.0 385 47.5
C09p48310 Brassica napus HOM05D005294 ORTHO05D006720 2.0e-91 340.5 368 48.9
MELO3C004615.2 Cucumis melo HOM05D005294 ORTHO05D006720 1.2e-88 331.3 284 57.4
CDE09G1011 Ceratophyllum demersum HOM05D005294 ORTHO05D006720 2.3e-87 327.0 449 37.9
SEGI_34717 Sequoiadendron giganteum HOM05D005294 ORTHO05D006720 2.8e-85 320.1 497 37.8
SHI02790 Sapria himalayana HOM05D005294 ORTHO05D006720 6.6e-82 308.9 471 39.3
SGA_v2.0_scaffold10G05199 Striga asiatica HOM05D005294 ORTHO05D006720 1.5e-81 307.8 527 36.6
Mapoly0079s0005 Marchantia polymorpha HOM05D005294 ORTHO05D006720 1.9e-65 254.2 515 32.0
Pp3c15_19200 Physcomitrium patens HOM05D005294 ORTHO05D006720 5.6e-65 252.7 473 32.8
Oeu052126.1 Olea europaea HOM05D005294 ORTHO05D006720 1.6e-59 234.6 325 41.8
MBI14_g43979_MAGBIO Magnolia biondii HOM05D005294 ORTHO05D006720 2.1e-48 197.6 192 51.6
CBR_g45363 Chara braunii HOM05D005294 ORTHO05D006720 7.1e-44 182.6 370 30.0
Zm00001eb171070 Zea mays HOM05D005294 ORTHO05D006720 3.3e-41 173.7 162 51.2
Zm00001eb301910 Zea mays HOM05D005294 ORTHO05D006720 1.3e-40 171.8 162 50.6
Actinidia25279 Actinidia chinensis HOM05D005294 ORTHO05D006720 4.9e-37 159.8 365 31.8
PRCOL_00004982 Prasinoderma coloniale HOM05D005294 ORTHO05D006720 1.7e-34 151.4 425 27.8
Aa31LG3G12580 Aethionema arabicum HOM05D005294 ORTHO05D006720 6.6e-34 149.4 127 52.8
Aa31LG3G12620 Aethionema arabicum HOM05D005294 ORTHO05D006720 6.6e-34 149.4 127 52.8
RcHm_v2.0_Chr2g0093931 Rosa chinensis HOM05D005294 ORTHO05D006720 1.3e-32 145.2 127 56.7
Aa31LG3G12670 Aethionema arabicum HOM05D004235 ORTHO05D005157 2.1e-32 144.4 381 30.7
Aa31sc2040G10 Aethionema arabicum HOM05D005294 ORTHO05D006720 2.1e-32 144.4 124 52.4
RcHm_v2.0_Chr2g0093921 Rosa chinensis HOM05D005294 ORTHO05D006720 4.8e-32 143.3 117 55.6
MCO15G657 Micromonas commoda HOM05D005294 ORTHO05D006720 1.4e-31 141.7 452 24.8
Aqoxy4G01950 Aquilegia oxysepala HOM05D002435 ORTHO05D002550 2.4e-31 141.0 217 39.6
CARHR271620 Cardamine hirsuta HOM05D005294 ORTHO05D006720 1.3e-29 135.2 102 58.8
Cre03.g186500 Chlamydomonas reinhardtii HOM05D005294 ORTHO05D006720 9.6e-25 119.0 296 26.7
SMO244G0078 Selaginella moellendorffii HOM05D005294 ORTHO05D006720 3.0e-18 97.4 175 38.3
SMO281G0026 Selaginella moellendorffii HOM05D005294 ORTHO05D006720 5.7e-17 93.2 121 39.7
Aqoxy4G01951 Aquilegia oxysepala HOM05D005294 ORTHO05D006720 2.2e-13 81.3 69 50.7
Zm00001eb382850 Zea mays HOM05D005294 ORTHO05D006720 1.2e-11 75.5 88 43.2
Zm00001eb383990 Zea mays HOM05D005294 ORTHO05D006720 2.1e-11 74.7 88 43.2
SGA_v2.0_scaffold194G40752 Striga asiatica HOM05D005294 ORTHO05D006720 7.9e-11 72.8 73 46.6
GSVIVG01038419001 Vitis vinifera HOM05D005294 ORTHO05D008307 7.9e-11 72.8 38 78.9
GSVIVG01027373001 Vitis vinifera HOM05D005294 ORTHO05D006720 8.7e-10 69.3 39 71.8


User provided reference genes

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