Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR102G3321 Punica granatum HOM05D004642 ORTHO05D005466 5.2e-251 871.3 737 100.0
Prupe.3G071700 Prunus persica HOM05D004642 ORTHO05D005466 1.0e-92 345.5 515 44.5
Cfa002061 Carpinus fangiana HOM05D004642 ORTHO05D005466 6.5e-92 342.8 515 55.3
Gorai.009G133100 Gossypium raimondii HOM05D004642 ORTHO05D005466 4.6e-90 336.7 527 52.4
QL05p024308 Quercus lobata HOM05D004642 ORTHO05D005466 4.6e-90 336.7 525 54.1
Actinidia24760 Actinidia chinensis HOM05D004642 ORTHO05D005466 3.9e-89 333.6 520 52.3
Gohir.A05G129515 Gossypium hirsutum HOM05D004642 ORTHO05D005466 3.7e-87 327.0 526 51.9
Gohir.D05G129000 Gossypium hirsutum HOM05D004642 ORTHO05D005466 1.8e-86 324.7 527 51.8
MD17G1195700 Malus domestica HOM05D004642 ORTHO05D005466 1.6e-82 311.6 488 46.3
Potri.001G179600 Populus trichocarpa HOM05D004642 ORTHO05D005466 3.6e-82 310.5 514 42.8
Actinidia08974 Actinidia chinensis HOM05D004642 ORTHO05D005466 3.1e-78 297.4 519 48.7
Glyma.12G087100 Glycine max HOM05D004642 ORTHO05D005466 9.4e-75 285.8 513 47.8
vmacro18915 Vaccinium macrocarpon HOM05D004642 ORTHO05D005466 2.7e-74 284.3 511 45.8
Haze_16437 Corylus avellana HOM05D004642 ORTHO05D005466 3.6e-74 283.9 436 56.2
TAR626G0806 Trochodendron aralioides HOM05D004642 ORTHO05D005466 2.3e-73 281.2 466 51.3
Aa31LG8G3170 Aethionema arabicum HOM05D004642 ORTHO05D005466 4.0e-73 280.4 513 43.5
Gorai.006G098800 Gossypium raimondii HOM05D004642 ORTHO05D005466 8.8e-73 279.3 558 38.9
Duzib192G0922 Durio zibethinus HOM05D004642 ORTHO05D005466 1.3e-71 275.4 542 50.0
Nitab4.5_0000671g0060 Nicotiana tabacum HOM05D004642 ORTHO05D005466 1.3e-71 275.4 519 45.3
vmacro16950 Vaccinium macrocarpon HOM05D004642 ORTHO05D005466 1.3e-71 275.4 426 54.0
Atru.chr1.3266 Acer truncatum HOM05D004642 ORTHO05D005466 3.7e-71 273.9 524 48.5
Thecc.06G086400 Theobroma cacao HOM05D004642 ORTHO05D005466 8.2e-71 272.7 569 45.9
Gohir.A09G083200 Gossypium hirsutum HOM05D004642 ORTHO05D005466 1.1e-70 272.3 554 37.4
CsaV3_7G033140 Cucumis sativus L. HOM05D004642 ORTHO05D005466 7.0e-70 269.6 519 44.3
Gohir.D09G083200 Gossypium hirsutum HOM05D004642 ORTHO05D005466 1.6e-69 268.5 554 38.6
MELO3C024228.2 Cucumis melo HOM05D004642 ORTHO05D005466 2.0e-69 268.1 423 46.8
BraA03t13110Z Brassica rapa HOM05D004642 ORTHO05D005466 5.0e-68 263.5 523 48.2
Lj3g0008789 Lotus japonicus HOM05D004642 ORTHO05D005466 5.0e-68 263.5 428 51.9
ClCG09G002170 Citrullus lanatus HOM05D004642 ORTHO05D005466 6.5e-68 263.1 508 44.1
Lalb_Chr04g0262651 Lupinus albus HOM05D004642 ORTHO05D005466 1.5e-67 261.9 464 48.3
Aqoxy7G01787 Aquilegia oxysepala HOM05D004642 ORTHO05D005466 8.8e-65 252.7 447 51.0
A03p39630 Brassica napus HOM05D004642 ORTHO05D005466 8.8e-65 252.7 470 49.6
Thhalv10020153m.g Eutrema salsugineum HOM05D004642 ORTHO05D005466 5.7e-64 250.0 519 38.9
TWI75G1656 Tripterygium wilfordii HOM05D004642 ORTHO05D005466 7.5e-64 249.6 426 49.3
CiPaw.02G151400 Carya illinoinensis HOM05D004642 ORTHO05D005466 1.7e-63 248.4 520 49.0
Eucgr.F03012 Eucalyptus grandis HOM05D004642 ORTHO05D005466 1.1e-62 245.7 378 53.4
GSVIVG01017115001 Vitis vinifera HOM05D004642 ORTHO05D005466 5.4e-62 243.4 501 43.3
Ciclev10025273m.g Citrus clementina HOM05D004642 ORTHO05D005466 7.0e-62 243.0 368 57.1
Duzib235G0715 Durio zibethinus HOM05D004642 ORTHO05D005466 1.2e-61 242.3 564 46.1
CARHR091130 Cardamine hirsuta HOM05D004642 ORTHO05D005466 2.0e-61 241.5 519 38.0
PSO782G0786 Papaver somniferum HOM05D004642 ORTHO05D005466 2.7e-61 241.1 443 38.1
Lsat_1_v5_gn_4_103580 Lactuca sativa HOM05D004642 ORTHO05D005466 2.2e-60 238.0 520 37.3
CSS0030593 Camellia sinensis var. sinensis HOM05D004642 ORTHO05D005466 2.9e-60 237.7 368 57.9
Hma1.2p1_0323F.1_g125210 Hydrangea macrophylla HOM05D004642 ORTHO05D005466 8.5e-60 236.1 423 49.4
Lalb_Chr14g0373421 Lupinus albus HOM05D004642 ORTHO05D005466 1.9e-59 235.0 447 44.7
Dinv30514 Davidia involucrata HOM05D004642 ORTHO05D005466 5.5e-59 233.4 334 60.8
Rhsim08G0221000 Rhododendron simsii HOM05D004642 ORTHO05D005466 1.2e-58 232.3 514 42.4
Medtr4g054960 Medicago truncatula HOM05D004642 ORTHO05D005466 2.1e-58 231.5 437 47.8
PGSC0003DMG400002564 Solanum tuberosum HOM05D004642 ORTHO05D005466 4.7e-58 230.3 474 43.5
BcaC01g03843 Brassica carinata HOM05D004642 ORTHO05D005466 8.0e-58 229.6 471 48.0
C03p48030 Brassica napus HOM05D004642 ORTHO05D005466 8.0e-58 229.6 471 48.0
BolC3t17082H Brassica oleracea HOM05D004642 ORTHO05D005466 8.0e-58 229.6 471 48.0
Sopen03g039110 Solanum pennellii HOM05D004642 ORTHO05D005466 2.3e-57 228.0 513 41.1
Nitab4.5_0005851g0030 Nicotiana tabacum HOM05D004642 ORTHO05D005466 1.2e-56 225.7 518 40.2
Rhsim12G0197600 Rhododendron simsii HOM05D004642 ORTHO05D005466 4.4e-56 223.8 508 41.3
Lalb_Chr01g0012651 Lupinus albus HOM05D004642 ORTHO05D005466 2.2e-55 221.5 448 45.8
Solyc03g120230.3 Solanum lycopersicum HOM05D004642 ORTHO05D005466 2.8e-55 221.1 513 40.9
COL.COLO4_30362 Corchorus olitorius HOM05D004642 ORTHO05D005466 3.7e-55 220.7 564 44.0
SalBow2G0306 Salvia bowleyana HOM05D004642 ORTHO05D005466 6.3e-55 219.9 506 40.3
Cc04_g03480 Coffea canephora HOM05D004642 ORTHO05D005466 1.1e-54 219.2 481 33.5
Psat7g189080 Pisum sativum HOM05D004642 ORTHO05D005466 1.1e-54 219.2 492 43.3
BcaB04g18872 Brassica carinata HOM05D004642 ORTHO05D005466 1.4e-54 218.8 420 48.3
CiPaw.01G239700 Carya illinoinensis HOM05D004642 ORTHO05D005466 1.4e-54 218.8 514 40.5
AUR62016441 Chenopodium quinoa HOM05D004642 ORTHO05D005466 1.8e-54 218.4 481 43.2
Ca_19383_v3 Cicer arietinum L. HOM05D004642 ORTHO05D005466 3.1e-54 217.6 516 44.8
VMungo1127G1134 Vigna mungo HOM05D004642 ORTHO05D005466 4.1e-54 217.2 514 42.4
Manes.11G047800 Manihot esculenta HOM05D004642 ORTHO05D005466 3.5e-53 214.2 511 44.2
Hund00614 Selenicereus undatus HOM05D004642 ORTHO05D005466 5.9e-53 213.4 434 47.2
Sabra01G0147200 Salix brachista HOM05D004642 ORTHO05D005466 1.7e-52 211.8 594 37.0
Ah.01g021290 Amaranthus hybridus HOM05D004642 ORTHO05D005466 3.8e-52 210.7 497 46.1
Oeu033484.1 Olea europaea HOM05D004642 ORTHO05D005466 5.0e-52 210.3 494 38.7
Sed0016127 Sechium edule HOM05D004642 ORTHO05D005466 5.6e-51 206.8 410 40.7
AUR62011627 Chenopodium quinoa HOM05D004642 ORTHO05D005466 2.1e-50 204.9 473 41.9
Phvul.011G092000 Phaseolus vulgaris HOM05D004642 ORTHO05D005466 8.0e-50 203.0 516 43.6
THA.LOC104817998 Tarenaya hassleriana HOM05D004642 ORTHO05D005466 1.0e-49 202.6 509 40.9
Nn2g11790 Nelumbo nucifera HOM05D004642 ORTHO05D005466 4.0e-49 200.7 508 37.2
A05p33450 Brassica napus HOM05D004642 ORTHO05D005466 5.2e-49 200.3 472 41.7
FAN14G2337 Fragaria x ananassa HOM05D004642 ORTHO05D005466 2.6e-48 198.0 530 42.8
RcHm_v2.0_Chr2g0137781 Rosa chinensis HOM05D004642 ORTHO05D005466 2.6e-48 198.0 485 41.4
FvH4_6g31081 Fragaria vesca HOM05D004642 ORTHO05D005466 9.8e-48 196.1 522 42.9
Glyma.11G187500 Glycine max HOM05D004642 ORTHO05D005466 2.2e-47 194.9 519 39.3
BcaB06g25698 Brassica carinata HOM05D004642 ORTHO05D005466 4.9e-47 193.7 469 40.7
BcaC09g48580 Brassica carinata HOM05D004642 ORTHO05D005466 3.2e-46 191.0 480 33.8
Sed0016916 Sechium edule HOM05D004642 ORTHO05D005466 4.1e-46 190.7 508 41.5
MD09G1213800 Malus domestica HOM05D004642 ORTHO05D005466 5.4e-46 190.3 519 40.8
TPR.G15588 Trifolium pratense HOM05D004642 ORTHO05D005466 2.7e-45 188.0 405 43.5
AT3G16000 Arabidopsis thaliana HOM05D004642 ORTHO05D005466 7.8e-45 186.4 526 42.0
AL3G28650 Arabidopsis lyrata HOM05D004642 ORTHO05D005466 1.1e-43 182.6 523 41.7
Lj5A61G44 Lonicera japonica HOM05D004642 ORTHO05D005466 1.9e-43 181.8 448 38.8
SGA_v2.0_scaffold4G01996 Striga asiatica HOM05D004642 ORTHO05D005466 3.3e-43 181.0 425 37.2
Nn8g39228 Nelumbo nucifera HOM05D004642 ORTHO05D005466 7.3e-43 179.9 515 36.9
Dinv38051 Davidia involucrata HOM05D004642 ORTHO05D005466 1.2e-42 179.1 335 37.6
TAR636G0382 Trochodendron aralioides HOM05D004642 ORTHO05D005466 3.6e-42 177.6 252 46.8
Carub.0003s1573 Capsella rubella HOM05D004642 ORTHO05D005466 8.0e-42 176.4 517 41.4
BcaB04g20887 Brassica carinata HOM05D004642 ORTHO05D005466 2.3e-41 174.9 474 32.3
BolC5t33791H Brassica oleracea HOM05D004642 ORTHO05D005466 3.1e-41 174.5 462 43.3
MD09G1213500 Malus domestica HOM05D004642 ORTHO05D005466 3.1e-41 174.5 322 52.2
BraA05t22169Z Brassica rapa HOM05D004642 ORTHO05D005466 1.2e-40 172.6 481 42.4
Sp3g14350 Schrenkiella parvula HOM05D004642 ORTHO05D005466 3.4e-40 171.0 517 38.1
CANSAT56G1090 Cannabis sativa HOM05D004642 ORTHO05D005466 1.3e-39 169.1 520 41.7
Zm00001eb283760 Zea mays HOM05D004642 ORTHO05D005466 1.7e-39 168.7 491 38.3
Peaxi162Scf00015g00335 Petunia axillaris HOM05D004642 ORTHO05D005466 3.7e-39 167.5 513 40.0
FAN09G1651 Fragaria x ananassa HOM05D004642 ORTHO05D005466 6.4e-39 166.8 511 42.3
PSO063G4770 Papaver somniferum HOM05D004642 ORTHO05D005466 1.6e-37 162.2 423 31.9
arahy.Tifrunner.gnm1.ann1.CA04QB Arachis hypogaea HOM05D004642 ORTHO05D005466 1.0e-36 159.5 481 38.5
arahy.Tifrunner.gnm1.ann1.Z6VQ0W Arachis hypogaea HOM05D004642 ORTHO05D005466 1.0e-36 159.5 481 38.5
ECA248G0988 Erigeron canadensis HOM05D004642 ORTHO05D005466 3.9e-36 157.5 415 34.9
SalBow2G2616 Salvia bowleyana HOM05D004642 ORTHO05D005466 3.9e-36 157.5 516 40.3
C05p50450 Brassica napus HOM05D004642 ORTHO05D005466 1.5e-35 155.6 453 43.0
HPP92_020045 Vanilla planifolia HOM05D004642 ORTHO05D005466 4.3e-35 154.1 463 28.5
CDE06G0246 Ceratophyllum demersum HOM05D004642 ORTHO05D005466 2.1e-34 151.8 415 28.4
unitig_578.g16688 Utricularia gibba HOM05D004642 ORTHO05D005466 4.7e-34 150.6 542 38.6
arahy.Tifrunner.gnm1.ann1.I53961 Arachis hypogaea HOM05D004642 ORTHO05D005466 6.2e-34 150.2 468 38.2
Hma1.2p1_0323F.1_g125200 Hydrangea macrophylla HOM05D004642 ORTHO05D005466 6.2e-34 150.2 167 51.5
C01p48370 Brassica napus HOM05D004642 ORTHO05D005466 8.1e-34 149.8 493 29.6
arahy.Tifrunner.gnm1.ann1.D5EQ93 Arachis hypogaea HOM05D004642 ORTHO05D005466 1.8e-33 148.7 419 41.8
CDE07G1358 Ceratophyllum demersum HOM05D004642 ORTHO05D005466 4.0e-33 147.5 439 27.1
HanXRQChr09g0275271 Helianthus annuus HOM05D004642 ORTHO05D005466 5.2e-33 147.1 472 40.9
FAN02G1410 Fragaria x ananassa HOM05D004642 ORTHO05D005466 1.5e-32 145.6 254 42.9
CAN.G438.64 Capsicum annuum HOM05D004642 ORTHO05D005466 2.6e-32 144.8 515 34.4
MD09G1212900 Malus domestica HOM05D004642 ORTHO05D005466 2.9e-31 141.4 157 54.8
unitig_744.g24335 Utricularia gibba HOM05D004642 ORTHO05D005466 4.9e-31 140.6 412 39.6
HanXRQChr16g0500971 Helianthus annuus HOM05D004642 ORTHO05D005466 3.2e-30 137.9 469 33.0
BolC1t04795H Brassica oleracea HOM05D004642 ORTHO05D005466 7.1e-30 136.7 233 41.6
TAR624G0442 Trochodendron aralioides HOM05D004642 ORTHO05D005466 1.1e-27 129.4 116 65.5
EL10Ac9g21996 Beta vulgaris HOM05D004642 ORTHO05D005466 2.5e-27 128.3 489 37.4
HPP92_019980 Vanilla planifolia HOM05D004642 ORTHO05D005466 2.5e-27 128.3 395 42.3
FAN05G5776 Fragaria x ananassa HOM05D004642 ORTHO05D005466 4.3e-27 127.5 509 39.5
Migut.D01034 Erythranthe guttata HOM05D004642 ORTHO05D005466 1.2e-26 125.9 418 40.0
ATR0037G055 Amborella trichopoda HOM05D004642 ORTHO05D005466 4.9e-23 114.0 460 38.5
Sc21g0005100 Simmondsia chinensis HOM05D004642 ORTHO05D005466 4.1e-22 110.9 424 40.3
Hund06610 Selenicereus undatus HOM05D004642 ORTHO05D005466 2.1e-21 108.6 548 25.9
Os05g0180400 Oryza sativa ssp. japonica HOM05D004642 ORTHO05D005466 3.0e-20 104.8 484 28.9
MSTRG.9454 Avicennia marina HOM05D004642 ORTHO05D005466 4.7e-18 97.4 506 36.8
Zm00001eb122200 Zea mays HOM05D004642 ORTHO05D005466 2.6e-16 91.7 305 27.2
CDE07G0399 Ceratophyllum demersum HOM05D004642 ORTHO05D005466 3.4e-16 91.3 401 25.2
SGA_v2.0_scaffold37G14818 Striga asiatica HOM05D004642 ORTHO05D005466 6.4e-15 87.0 402 39.3
Os01g0180300 Oryza sativa ssp. japonica HOM05D004642 ORTHO05D005466 3.9e-12 77.8 409 24.4
Cpa.g.sc1188.1 Carica papaya HOM05D004642 ORTHO05D005466 2.5e-11 75.1 101 46.5
SEGI_16798 Sequoiadendron giganteum HOM05D004642 ORTHO05D005466 7.3e-11 73.6 498 26.5
Thhalv10023042m.g Eutrema salsugineum HOM05D004642 ORTHO05D005466 9.6e-11 73.2 302 25.2
Glyma.11G237600 Glycine max HOM05D004642 ORTHO05D005466 2.8e-10 71.6 111 39.6
CSS0005738 Camellia sinensis var. sinensis HOM05D004642 ORTHO05D005466 1.7e-07 62.4 52 63.5
A01p38100 Brassica napus HOM05D015723 ORTHO05D003275 2.4e-06 58.5 195 28.7


User provided reference genes

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