Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR102G3267 Punica granatum HOM05D005110 ORTHO05D006074 2.3e-96 355.5 178 100.0
Dinv22825 Davidia involucrata HOM05D005110 ORTHO05D006074 6.9e-48 194.5 181 61.3
GSVIVG01036094001 Vitis vinifera HOM05D005110 ORTHO05D006074 9.0e-48 194.1 180 60.0
Duzib170G1118 Durio zibethinus HOM05D005110 ORTHO05D006074 4.9e-46 188.3 181 55.8
MD03G1148100 Malus domestica HOM05D005110 ORTHO05D006074 3.2e-45 185.7 181 57.5
Sabra09G0012800 Salix brachista HOM05D005110 ORTHO05D006074 2.1e-44 183.0 171 57.9
Dinv42535 Davidia involucrata HOM05D005110 ORTHO05D006074 2.7e-44 182.6 181 56.9
Actinidia37076 Actinidia chinensis HOM05D005110 ORTHO05D006074 3.5e-44 182.2 180 58.3
Thecc.09G280200 Theobroma cacao HOM05D005110 ORTHO05D006074 6.0e-44 181.4 180 55.6
Duzib150G1383 Durio zibethinus HOM05D005110 ORTHO05D006074 7.9e-44 181.0 180 55.6
MD11G1167600 Malus domestica HOM05D005110 ORTHO05D006074 7.9e-44 181.0 181 56.9
Prupe.6G134300 Prunus persica HOM05D005110 ORTHO05D006074 7.9e-44 181.0 170 57.6
Potri.009G019300 Populus trichocarpa HOM05D005110 ORTHO05D006074 1.8e-43 179.9 179 57.5
QL01p011992 Quercus lobata HOM05D005110 ORTHO05D006074 1.8e-43 179.9 181 55.8
Duzib168G1438 Durio zibethinus HOM05D005110 ORTHO05D006074 2.3e-43 179.5 183 55.7
CANSAT54G0919 Cannabis sativa HOM05D005110 ORTHO05D006074 5.1e-43 178.3 180 53.9
Cc01_g08910 Coffea canephora HOM05D005110 ORTHO05D006074 1.5e-42 176.8 180 53.9
Lj3g0002892 Lotus japonicus HOM05D005110 ORTHO05D006074 1.5e-42 176.8 180 56.1
CSS0022586 Camellia sinensis var. sinensis HOM05D005110 ORTHO05D006074 3.3e-42 175.6 181 55.8
Cfa009996 Carpinus fangiana HOM05D005110 ORTHO05D006074 3.3e-42 175.6 180 55.6
QL01p011978 Quercus lobata HOM05D005110 ORTHO05D006074 4.3e-42 175.3 175 56.6
Ciclev10029378m.g Citrus clementina HOM05D005110 ORTHO05D006074 5.6e-42 174.9 183 57.9
TWI79G0870 Tripterygium wilfordii HOM05D005110 ORTHO05D006074 1.3e-41 173.7 172 56.4
Oeu035569.1 Olea europaea HOM05D005110 ORTHO05D006074 2.8e-41 172.6 176 55.1
Rhsim01G0204600 Rhododendron simsii HOM05D005110 ORTHO05D006074 2.8e-41 172.6 178 56.7
Lalb_Chr03g0028181 Lupinus albus HOM05D005110 ORTHO05D006074 8.2e-41 171.0 178 53.4
COL.COLO4_34021 Corchorus olitorius HOM05D005110 ORTHO05D006074 1.4e-40 170.2 181 54.1
FvH4_3g25370 Fragaria vesca HOM05D005110 ORTHO05D006074 1.4e-40 170.2 175 54.9
FAN21G3897 Fragaria x ananassa HOM05D005110 ORTHO05D006074 1.4e-40 170.2 175 54.9
vmacro03324 Vaccinium macrocarpon HOM05D005110 ORTHO05D006074 2.4e-40 169.5 178 55.1
Eucgr.B03836 Eucalyptus grandis HOM05D005110 ORTHO05D006074 3.1e-40 169.1 189 52.4
Nn2g14215 Nelumbo nucifera HOM05D005110 ORTHO05D006074 3.1e-40 169.1 177 53.1
TWI31G0848 Tripterygium wilfordii HOM05D005110 ORTHO05D006074 3.1e-40 169.1 173 56.6
FAN25G3715 Fragaria x ananassa HOM05D005110 ORTHO05D006074 4.0e-40 168.7 175 54.9
Glyma.13G315400 Glycine max HOM05D005110 ORTHO05D006074 4.0e-40 168.7 179 50.3
FAN11G1413 Fragaria x ananassa HOM05D005110 ORTHO05D006074 5.3e-40 168.3 175 54.9
Hma1.2p1_0587F.1_g184070 Hydrangea macrophylla HOM05D005110 ORTHO05D006074 5.3e-40 168.3 185 53.5
CiPaw.13G134200 Carya illinoinensis HOM05D005110 ORTHO05D006074 9.0e-40 167.5 180 54.4
Gohir.D05G082600 Gossypium hirsutum HOM05D005110 ORTHO05D006074 1.5e-39 166.8 173 52.6
Gorai.009G084200 Gossypium raimondii HOM05D005110 ORTHO05D006074 1.5e-39 166.8 173 52.6
Gohir.A05G079700 Gossypium hirsutum HOM05D005110 ORTHO05D006074 2.0e-39 166.4 173 53.2
Medtr2g086680 Medicago truncatula HOM05D005110 ORTHO05D006074 3.4e-39 165.6 178 49.4
Atru.chr3.3190 Acer truncatum HOM05D005110 ORTHO05D006074 5.8e-39 164.9 184 54.3
MBI17_g32417_MAGBIO Magnolia biondii HOM05D005110 ORTHO05D006074 7.6e-39 164.5 183 52.5
HanXRQChr01g0024471 Helianthus annuus HOM05D005110 ORTHO05D006074 1.3e-38 163.7 176 51.7
ECA248G3565 Erigeron canadensis HOM05D005110 ORTHO05D006074 1.7e-38 163.3 188 51.1
Glyma.12G091100 Glycine max HOM05D005110 ORTHO05D006074 1.7e-38 163.3 180 51.7
DCAR_010338 Daucus carota HOM05D005110 ORTHO05D006074 2.9e-38 162.5 179 51.4
Glyma.11G182100 Glycine max HOM05D005110 ORTHO05D006074 2.9e-38 162.5 180 51.7
Lsat_1_v5_gn_1_59041 Lactuca sativa HOM05D005110 ORTHO05D006074 2.9e-38 162.5 178 50.6
Psat7g142160 Pisum sativum HOM05D005110 ORTHO05D006074 2.9e-38 162.5 178 50.0
CAN.G919.35 Capsicum annuum HOM05D005110 ORTHO05D006074 4.9e-38 161.8 172 53.5
Oeu027156.1 Olea europaea HOM05D005110 ORTHO05D006074 6.5e-38 161.4 182 51.1
TPR.G17227 Trifolium pratense HOM05D005110 ORTHO05D006074 6.5e-38 161.4 178 50.0
Lj3g0016581 Lotus japonicus HOM05D005110 ORTHO05D006074 8.4e-38 161.0 181 52.5
Manes.11G163300 Manihot esculenta HOM05D005110 ORTHO05D006074 1.1e-37 160.6 176 53.4
Phvul.011G095400 Phaseolus vulgaris HOM05D005110 ORTHO05D006074 1.4e-37 160.2 178 51.7
PGSC0003DMG400005884 Solanum tuberosum HOM05D005110 ORTHO05D006074 1.4e-37 160.2 173 50.9
SalBow6G3038 Salvia bowleyana HOM05D005110 ORTHO05D006074 1.9e-37 159.8 174 52.9
Sopen06g030680 Solanum pennellii HOM05D005110 ORTHO05D006074 2.5e-37 159.5 173 51.4
VMungo1080G1295 Vigna mungo HOM05D005110 ORTHO05D006074 3.2e-37 159.1 178 48.3
vmacro14345 Vaccinium macrocarpon HOM05D005110 ORTHO05D006074 4.2e-37 158.7 185 53.5
Aqoxy4G02728 Aquilegia oxysepala HOM05D005110 ORTHO05D006074 5.5e-37 158.3 187 50.3
Lalb_Chr01g0004911 Lupinus albus HOM05D005110 ORTHO05D006074 5.5e-37 158.3 178 52.2
Psat5g259000 Pisum sativum HOM05D005110 ORTHO05D006074 5.5e-37 158.3 175 50.3
arahy.Tifrunner.gnm1.ann1.XFIF97 Arachis hypogaea HOM05D005110 ORTHO05D006074 7.1e-37 157.9 179 52.0
HanXRQChr13g0426031 Helianthus annuus HOM05D005110 ORTHO05D006074 9.3e-37 157.5 176 50.0
arahy.Tifrunner.gnm1.ann1.EYNG7S Arachis hypogaea HOM05D005110 ORTHO05D006074 1.2e-36 157.1 179 52.5
Peaxi162Scf00091g00622 Petunia axillaris HOM05D005110 ORTHO05D006074 1.2e-36 157.1 175 51.4
Oeu002365.1 Olea europaea HOM05D005110 ORTHO05D006074 1.6e-36 156.8 182 51.6
CiPaw.14G098700 Carya illinoinensis HOM05D005110 ORTHO05D006074 2.1e-36 156.4 180 51.1
VMungo1127G0906 Vigna mungo HOM05D005110 ORTHO05D006074 2.1e-36 156.4 172 51.7
Actinidia25117 Actinidia chinensis HOM05D005110 ORTHO05D006074 6.0e-36 154.8 178 53.9
Solyc06g074260.4 Solanum lycopersicum HOM05D005110 ORTHO05D006074 6.0e-36 154.8 172 50.0
Phvul.005G122600 Phaseolus vulgaris HOM05D005110 ORTHO05D006074 1.0e-35 154.1 174 48.9
MSTRG.18766 Avicennia marina HOM05D005110 ORTHO05D006074 1.8e-35 153.3 180 47.2
MSTRG.21034 Avicennia marina HOM05D005110 ORTHO05D006074 1.8e-35 153.3 180 49.4
Lalb_Chr19g0136401 Lupinus albus HOM05D005110 ORTHO05D006074 3.9e-35 152.1 175 49.7
Nitab4.5_0005472g0010 Nicotiana tabacum HOM05D005110 ORTHO05D006074 5.1e-35 151.8 172 50.0
Rhsim13G0112900 Rhododendron simsii HOM05D005110 ORTHO05D006074 8.7e-35 151.0 180 52.8
Cpa.g.sc195.13 Carica papaya HOM05D005110 ORTHO05D006074 1.1e-34 150.6 173 50.9
Hund18768 Selenicereus undatus HOM05D005110 ORTHO05D006074 4.3e-34 148.7 172 49.4
Sed0010097 Sechium edule HOM05D005110 ORTHO05D006074 5.7e-34 148.3 188 50.0
SGA_v2.0_scaffold22G09852 Striga asiatica HOM05D005110 ORTHO05D006074 5.7e-34 148.3 180 48.9
CSS0002660 Camellia sinensis var. sinensis HOM05D005110 ORTHO05D006074 1.6e-33 146.7 181 51.4
Nitab4.5_0000937g0070 Nicotiana tabacum HOM05D005110 ORTHO05D006074 1.8e-32 143.3 185 47.0
DCAR_012208 Daucus carota HOM05D005110 ORTHO05D006074 9.0e-32 141.0 182 49.5
Sc06g0008710 Simmondsia chinensis HOM05D005110 ORTHO05D006074 1.2e-31 140.6 185 47.0
Migut.D02434 Erythranthe guttata HOM05D005110 ORTHO05D006074 2.0e-31 139.8 184 47.3
CsaV3_6G038400 Cucumis sativus L. HOM05D005110 ORTHO05D006074 1.7e-30 136.7 178 48.3
ClCG02G022270 Citrullus lanatus HOM05D005110 ORTHO05D006074 5.0e-30 135.2 187 48.1
arahy.Tifrunner.gnm1.ann1.NUG06Z Arachis hypogaea HOM05D005110 ORTHO05D006074 1.9e-29 133.3 179 45.3
arahy.Tifrunner.gnm1.ann1.GADS7N Arachis hypogaea HOM05D005110 ORTHO05D006074 3.2e-29 132.5 175 45.1
QL01p011973 Quercus lobata HOM05D005110 ORTHO05D006074 4.2e-29 132.1 181 45.9
AT5G22430 Arabidopsis thaliana HOM05D005110 ORTHO05D006074 5.5e-29 131.7 175 46.9
MELO3C014504.2 Cucumis melo HOM05D005110 ORTHO05D006074 7.2e-29 131.3 174 48.3
Carub.0006s2017 Capsella rubella HOM05D005110 ORTHO05D006074 9.3e-29 131.0 181 48.1
Thhalv10014830m.g Eutrema salsugineum HOM05D005110 ORTHO05D006074 1.6e-28 130.2 180 46.7
CsaV3_1G014930 Cucumis sativus L. HOM05D005110 ORTHO05D006074 2.7e-28 129.4 173 45.7
CsaV3_1G015850 Cucumis sativus L. HOM05D005110 ORTHO05D006074 2.7e-28 129.4 173 45.7
C02p10870 Brassica napus HOM05D005110 ORTHO05D006074 4.6e-28 128.6 180 45.0
BraA02t05659Z Brassica rapa HOM05D005110 ORTHO05D006074 4.6e-28 128.6 181 46.4
AL6G33450 Arabidopsis lyrata HOM05D005110 ORTHO05D006074 6.1e-28 128.3 181 46.4
BolC2t07157H Brassica oleracea HOM05D005110 ORTHO05D006074 1.0e-27 127.5 181 47.0
BcaB08g36432 Brassica carinata HOM05D000477 ORTHO05D006074 1.3e-27 127.1 172 45.9
BNapus_Darmor_BZH_scaffold_38p00660 Brassica napus HOM05D005110 ORTHO05D006074 3.9e-27 125.6 181 45.3
Sp6g22820 Schrenkiella parvula HOM05D005110 ORTHO05D006074 8.8e-27 124.4 180 44.4
Aa31LG1G13130 Aethionema arabicum HOM05D005110 ORTHO05D006074 1.5e-26 123.6 180 45.6
ClCG01G012070 Citrullus lanatus HOM05D005110 ORTHO05D006074 1.9e-26 123.2 178 39.9
MELO3C004693.2 Cucumis melo HOM05D005110 ORTHO05D006074 1.9e-26 123.2 172 41.9
TAR369G1010 Trochodendron aralioides HOM05D005110 ORTHO05D006074 2.5e-26 122.9 127 53.5
BcaB05g22726 Brassica carinata HOM05D005110 ORTHO05D006074 3.3e-26 122.5 181 45.9
CARHR119990 Cardamine hirsuta HOM05D005110 ORTHO05D006074 2.8e-25 119.4 172 44.2
TAR623G0362 Trochodendron aralioides HOM05D005110 ORTHO05D006074 3.7e-25 119.0 136 50.7
CARHR191100 Cardamine hirsuta HOM05D005110 ORTHO05D006074 1.8e-24 116.7 181 44.8
Lj2P968T16 Lonicera japonica HOM05D005110 ORTHO05D006074 2.4e-24 116.3 121 47.9
MSTRG.17701 Avicennia marina HOM05D005110 ORTHO05D006074 3.1e-24 115.9 173 43.4
THA.LOC104800521 Tarenaya hassleriana HOM05D005110 ORTHO05D006074 3.1e-24 115.9 184 46.2
AL4G21340 Arabidopsis lyrata HOM05D005110 ORTHO05D006074 6.9e-24 114.8 174 43.1
Thhalv10002110m.g Eutrema salsugineum HOM05D005110 ORTHO05D006074 6.9e-24 114.8 178 44.4
AT2G27385 Arabidopsis thaliana HOM05D005110 ORTHO05D006074 9.1e-24 114.4 174 43.1
BraA07t29533Z Brassica rapa HOM05D005110 ORTHO05D006074 1.2e-23 114.0 169 44.4
Carub.0004s0802 Capsella rubella HOM05D005110 ORTHO05D006074 1.5e-23 113.6 170 44.7
A07p18150 Brassica napus HOM05D005110 ORTHO05D006074 2.0e-23 113.2 169 44.4
Hund20930 Selenicereus undatus HOM05D005110 ORTHO05D006074 2.0e-23 113.2 139 46.8
THA.LOC104810920 Tarenaya hassleriana HOM05D005110 ORTHO05D006074 5.9e-23 111.7 180 43.3
BcaB02g10088 Brassica carinata HOM05D005110 ORTHO05D006074 1.3e-22 110.5 174 44.3
Sp4g10180 Schrenkiella parvula HOM05D005110 ORTHO05D006074 1.7e-22 110.2 173 42.2
HPP92_011908 Vanilla planifolia HOM05D005110 ORTHO05D006074 1.7e-22 110.2 120 48.3
BcaC03g13883 Brassica carinata HOM05D005110 ORTHO05D006074 6.5e-22 108.2 156 44.2
C04p24220 Brassica napus HOM05D005110 ORTHO05D006074 1.1e-21 107.5 173 42.2
BolC4t23920H Brassica oleracea HOM05D005110 ORTHO05D006074 1.1e-21 107.5 173 42.2
ATR0580G107 Amborella trichopoda HOM05D005110 ORTHO05D006074 4.2e-21 105.5 187 41.2
BcaC02g10869 Brassica carinata HOM05D005110 ORTHO05D006074 4.2e-21 105.5 173 42.2
HPP92_005471 Vanilla planifolia HOM05D005110 ORTHO05D006074 1.0e-19 100.9 193 35.2
Manes.04G002101 Manihot esculenta HOM05D005110 ORTHO05D006074 5.1e-19 98.6 108 48.1
Actinidia35470 Actinidia chinensis HOM05D005110 ORTHO05D006074 5.0e-14 82.0 92 53.3
Haze_23356 Corylus avellana HOM05D005110 ORTHO05D006074 5.0e-14 82.0 102 52.0
vmacro14354 Vaccinium macrocarpon HOM05D005110 ORTHO05D006074 1.1e-13 80.9 111 49.5
unitig_746.g26607 Utricularia gibba HOM05D005110 ORTHO05D006074 4.7e-12 75.5 175 34.3
BolC9t58287H Brassica oleracea HOM05D005110 ORTHO05D006074 3.9e-11 72.4 187 33.2
C09p54160 Brassica napus HOM05D005110 ORTHO05D006074 1.3e-09 67.4 187 32.1
Zm00001eb242880 Zea mays HOM05D005110 ORTHO05D006074 1.6e-07 60.5 215 31.2
TPR.G4458 Trifolium pratense HOM05D005110 ORTHO05D006074 5.9e-07 58.5 69 49.3


User provided reference genes

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