Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR102G3231 Punica granatum HOM05D005344 ORTHO05D006444 5.7e-68 260.8 129 100.0
PGR083G0019 Punica granatum HOM05D005344 ORTHO05D006444 1.3e-64 249.6 127 96.1
GSVIVG01009861001 Vitis vinifera HOM05D005344 ORTHO05D006444 1.8e-61 239.2 127 91.3
Potri.004G228566 Populus trichocarpa HOM05D005344 ORTHO05D006444 2.0e-60 235.7 127 90.6
Duzib093G0333 Durio zibethinus HOM05D005344 ORTHO05D006444 4.4e-60 234.6 127 91.3
CANSAT56G2098 Cannabis sativa HOM05D005344 ORTHO05D006444 5.7e-60 234.2 127 88.2
Cpa.g.sc116.53 Carica papaya HOM05D005344 ORTHO05D006444 7.4e-60 233.8 127 90.6
Gohir.D05G218100 Gossypium hirsutum HOM05D005344 ORTHO05D006444 7.4e-60 233.8 127 90.6
TAR381G0484 Trochodendron aralioides HOM05D005344 ORTHO05D006444 9.7e-60 233.4 127 89.0
Atru.chr12.1135 Acer truncatum HOM05D005344 ORTHO05D006444 1.3e-59 233.0 127 89.0
Gohir.A05G214800 Gossypium hirsutum HOM05D005344 ORTHO05D006444 1.3e-59 233.0 127 90.6
Nn6g32300 Nelumbo nucifera HOM05D005344 ORTHO05D006444 2.2e-59 232.3 127 89.8
Thecc.08G040900 Theobroma cacao HOM05D005344 ORTHO05D006444 2.8e-59 231.9 127 90.6
CiPaw.08G064300 Carya illinoinensis HOM05D005344 ORTHO05D006444 3.7e-59 231.5 127 89.0
TWI75G1031 Tripterygium wilfordii HOM05D005344 ORTHO05D006444 3.7e-59 231.5 127 89.0
CANSAT56G2754 Cannabis sativa HOM05D005344 ORTHO05D006444 2.4e-58 228.8 127 86.6
Manes.18G015800 Manihot esculenta HOM05D005344 ORTHO05D006444 2.4e-58 228.8 127 88.2
QL02p011006 Quercus lobata HOM05D005344 ORTHO05D006444 2.4e-58 228.8 127 88.2
TWI31G0971 Tripterygium wilfordii HOM05D005344 ORTHO05D006444 4.1e-58 228.0 127 87.4
Dinv39499 Davidia involucrata HOM05D005344 ORTHO05D006444 6.9e-58 227.3 127 88.2
CSS0034614 Camellia sinensis var. sinensis HOM05D005344 ORTHO05D006444 9.1e-58 226.9 127 87.4
Eucgr.F01631 Eucalyptus grandis HOM05D005344 ORTHO05D006444 9.1e-58 226.9 124 89.5
QL03p018250 Quercus lobata HOM05D005344 ORTHO05D006444 9.1e-58 226.9 127 86.6
arahy.Tifrunner.gnm1.ann1.Y8FRL8 Arachis hypogaea HOM05D005344 ORTHO05D006444 1.2e-57 226.5 127 87.4
Cfa013923 Carpinus fangiana HOM05D005344 ORTHO05D006444 1.5e-57 226.1 126 88.1
Sabra01G0173600 Salix brachista HOM05D005344 ORTHO05D006444 4.5e-57 224.6 120 90.0
Nitab4.5_0001988g0010 Nicotiana tabacum HOM05D005344 ORTHO05D006444 1.0e-56 223.4 127 86.6
Cc10_g01930 Coffea canephora HOM05D005344 ORTHO05D006444 2.2e-56 222.2 127 86.6
Potri.012G106900 Populus trichocarpa HOM05D005344 ORTHO05D006444 2.2e-56 222.2 119 90.8
Sed0018322 Sechium edule HOM05D005344 ORTHO05D006444 2.2e-56 222.2 127 84.3
Solyc04g081220.3 Solanum lycopersicum HOM05D005344 ORTHO05D006444 2.2e-56 222.2 127 85.8
Sopen04g034830 Solanum pennellii HOM05D005344 ORTHO05D006444 2.2e-56 222.2 127 85.8
ECA236G2959 Erigeron canadensis HOM05D005344 ORTHO05D006444 3.8e-56 221.5 127 83.5
PGSC0003DMG400003723 Solanum tuberosum HOM05D005344 ORTHO05D006444 3.8e-56 221.5 127 85.8
HanXRQChr04g0119171 Helianthus annuus HOM05D005344 ORTHO05D006444 6.5e-56 220.7 127 85.0
Lalb_Chr11g0061991 Lupinus albus HOM05D005344 ORTHO05D006444 6.5e-56 220.7 127 86.6
Prupe.1G182400 Prunus persica HOM05D005344 ORTHO05D006444 6.5e-56 220.7 127 85.0
Psat5g014400 Pisum sativum HOM05D005344 ORTHO05D006444 8.5e-56 220.3 127 85.0
CsaV3_3G045650 Cucumis sativus L. HOM05D005344 ORTHO05D006444 1.1e-55 219.9 127 85.0
FAN15G2308 Fragaria x ananassa HOM05D005344 ORTHO05D006444 1.1e-55 219.9 127 85.8
Prupe.1G368800 Prunus persica HOM05D005344 ORTHO05D006444 1.1e-55 219.9 127 85.0
AT5G39600 Arabidopsis thaliana HOM05D005344 ORTHO05D006444 1.9e-55 219.2 127 85.0
Gorai.009G225000 Gossypium raimondii HOM05D005344 ORTHO05D006444 1.9e-55 219.2 119 89.9
SGA_v2.0_scaffold47G17494 Striga asiatica HOM05D005344 ORTHO05D006444 1.9e-55 219.2 127 84.3
Aa31LG9G16480 Aethionema arabicum HOM05D005344 ORTHO05D006444 2.5e-55 218.8 127 83.5
HanXRQChr15g0480961 Helianthus annuus HOM05D005344 ORTHO05D006444 2.5e-55 218.8 127 85.0
Lsat_1_v5_gn_7_29421 Lactuca sativa HOM05D005344 ORTHO05D006444 2.5e-55 218.8 127 84.3
TPR.G38895 Trifolium pratense HOM05D005344 ORTHO05D006444 4.2e-55 218.0 127 83.5
Medtr3g113260 Medicago truncatula HOM05D005344 ORTHO05D006444 5.5e-55 217.6 127 84.3
BcaB06g27347 Brassica carinata HOM05D005344 ORTHO05D006444 7.2e-55 217.2 127 81.9
BolC4t26183H Brassica oleracea HOM05D005344 ORTHO05D006444 7.2e-55 217.2 127 81.9
BraA04t16898Z Brassica rapa HOM05D005344 ORTHO05D006444 7.2e-55 217.2 127 81.9
Carub.0007s3634 Capsella rubella HOM05D005344 ORTHO05D006444 7.2e-55 217.2 127 83.5
MD02G1241500 Malus domestica HOM05D005344 ORTHO05D006444 7.2e-55 217.2 127 82.7
Nitab4.5_0006992g0020 Nicotiana tabacum HOM05D005344 ORTHO05D006444 7.2e-55 217.2 127 84.3
Sp7g02390 Schrenkiella parvula HOM05D005344 ORTHO05D006444 7.2e-55 217.2 127 81.1
vmacro04337 Vaccinium macrocarpon HOM05D005344 ORTHO05D006444 7.2e-55 217.2 119 85.7
Thhalv10027992m.g Eutrema salsugineum HOM05D005344 ORTHO05D006444 9.4e-55 216.9 127 82.7
RcHm_v2.0_Chr6g0302491 Rosa chinensis HOM05D005344 ORTHO05D006444 9.4e-55 216.9 127 84.3
Haze_22604 Corylus avellana HOM05D005344 ORTHO05D006444 1.2e-54 216.5 119 89.9
Lj1g0020845 Lotus japonicus HOM05D005344 ORTHO05D006444 1.2e-54 216.5 127 83.5
MD07G1075400 Malus domestica HOM05D005344 ORTHO05D006444 1.2e-54 216.5 127 82.7
Migut.N03145 Erythranthe guttata HOM05D005344 ORTHO05D006444 1.6e-54 216.1 127 82.7
Rhsim07G0245900 Rhododendron simsii HOM05D005344 ORTHO05D006444 1.6e-54 216.1 119 85.7
TPR.G5807 Trifolium pratense HOM05D005344 ORTHO05D006444 2.1e-54 215.7 128 84.4
Medtr1g013440 Medicago truncatula HOM05D005344 ORTHO05D006444 3.6e-54 214.9 127 83.5
Peaxi162Scf00287g01714 Petunia axillaris HOM05D005344 ORTHO05D006444 3.6e-54 214.9 127 82.7
FvH4_2g38800 Fragaria vesca HOM05D005344 ORTHO05D006444 4.7e-54 214.5 127 83.5
CARHR262690 Cardamine hirsuta HOM05D005344 ORTHO05D006444 6.1e-54 214.2 127 82.7
DCAR_013854 Daucus carota HOM05D005344 ORTHO05D006444 6.1e-54 214.2 119 84.9
Sc02g0008440 Simmondsia chinensis HOM05D005344 ORTHO05D006444 6.1e-54 214.2 127 79.5
CSS0046670 Camellia sinensis var. sinensis HOM05D005344 ORTHO05D006444 7.9e-54 213.8 121 85.1
AL7G50710 Arabidopsis lyrata HOM05D005344 ORTHO05D006444 1.0e-53 213.4 127 82.7
Glyma.06G025600 Glycine max HOM05D005344 ORTHO05D006444 1.4e-53 213.0 127 81.9
Actinidia15404 Actinidia chinensis HOM05D005344 ORTHO05D006444 1.8e-53 212.6 123 82.1
COL.COLO4_32025 Corchorus olitorius HOM05D005344 ORTHO05D006444 1.8e-53 212.6 119 87.4
MSTRG.24255 Avicennia marina HOM05D005344 ORTHO05D006444 2.3e-53 212.2 127 82.7
PSO541G4852 Papaver somniferum HOM05D005344 ORTHO05D006444 2.3e-53 212.2 127 81.9
PSO675G5369 Papaver somniferum HOM05D005344 ORTHO05D006444 2.3e-53 212.2 127 81.9
Phvul.009G015400 Phaseolus vulgaris HOM05D005344 ORTHO05D006444 3.9e-53 211.5 127 83.5
CSS0046173 Camellia sinensis var. sinensis HOM05D005344 ORTHO05D006444 6.7e-53 210.7 117 85.5
ClCG05G018520 Citrullus lanatus HOM05D005344 ORTHO05D006444 8.8e-53 210.3 119 85.7
TAR625G0974 Trochodendron aralioides HOM05D005344 ORTHO05D006444 8.8e-53 210.3 127 79.5
arahy.Tifrunner.gnm1.ann1.0YI8WX Arachis hypogaea HOM05D005344 ORTHO05D006444 1.1e-52 209.9 119 85.7
arahy.Tifrunner.gnm1.ann1.2J2T1L Arachis hypogaea HOM05D005344 ORTHO05D006444 5.7e-52 207.6 122 83.6
CDE05G1229 Ceratophyllum demersum HOM05D005344 ORTHO05D006444 9.7e-52 206.8 127 77.2
SalBow8G2912 Salvia bowleyana HOM05D005344 ORTHO05D006444 2.2e-51 205.7 119 84.0
CAN.G1271.12 Capsicum annuum HOM05D005344 ORTHO05D006444 2.8e-51 205.3 119 84.0
Glyma.04G025800 Glycine max HOM05D005344 ORTHO05D006444 3.7e-51 204.9 127 79.5
A04p12340 Brassica napus HOM05D005344 ORTHO05D006444 4.8e-51 204.5 121 81.0
C04p46010 Brassica napus HOM05D005344 ORTHO05D006444 4.8e-51 204.5 121 81.0
FAN20G2570 Fragaria x ananassa HOM05D005344 ORTHO05D006444 4.8e-51 204.5 119 84.0
Ca_16814_v3 Cicer arietinum L. HOM05D005344 ORTHO05D006444 1.1e-50 203.4 119 84.0
Nitab4.5_0005425g0020 Nicotiana tabacum HOM05D005344 ORTHO05D006444 1.1e-50 203.4 119 83.2
arahy.Tifrunner.gnm1.ann1.NGB00B Arachis hypogaea HOM05D005344 ORTHO05D006444 2.4e-50 202.2 119 84.0
Oeu031192.1 Olea europaea HOM05D005344 ORTHO05D006444 2.4e-50 202.2 119 82.4
Oeu024518.1 Olea europaea HOM05D005344 ORTHO05D006444 7.0e-50 200.7 119 82.4
Ciclev10002838m.g Citrus clementina HOM05D005344 ORTHO05D006444 1.2e-49 199.9 127 78.7
FvH4_1g25620 Fragaria vesca HOM05D005344 ORTHO05D006444 2.0e-49 199.1 129 78.3
CDE05G1331 Ceratophyllum demersum HOM05D005344 ORTHO05D006444 4.5e-49 198.0 119 78.2
MELO3C003771.2 Cucumis melo HOM05D005344 ORTHO05D006444 4.5e-49 198.0 113 85.0
TAR625G1223 Trochodendron aralioides HOM05D005344 ORTHO05D006444 4.5e-49 198.0 117 80.3
Aqoxy6G02944 Aquilegia oxysepala HOM05D005344 ORTHO05D006444 7.7e-49 197.2 119 81.5
VMungo1309G2030 Vigna mungo HOM05D005344 ORTHO05D006444 1.0e-48 196.8 122 80.3
unitig_899.g15276 Utricularia gibba HOM05D005344 ORTHO05D006444 1.7e-48 196.1 148 69.6
Aqoxy6G02319 Aquilegia oxysepala HOM05D005344 ORTHO05D006444 2.2e-48 195.7 127 74.8
HPP92_014936 Vanilla planifolia HOM05D005344 ORTHO05D006444 1.1e-47 193.4 126 76.2
EL10Ac1g02258 Beta vulgaris HOM05D005344 ORTHO05D006444 2.5e-47 192.2 127 71.7
FAN23G0736 Fragaria x ananassa HOM05D005344 ORTHO05D006444 2.1e-46 189.1 132 75.0
AUR62035723 Chenopodium quinoa HOM05D005344 ORTHO05D006444 3.6e-46 188.3 144 65.3
SHI08085 Sapria himalayana HOM05D005344 ORTHO05D006444 6.1e-46 187.6 119 77.3
FAN26G0652 Fragaria x ananassa HOM05D005344 ORTHO05D006444 1.8e-45 186.0 122 75.4
AUR62035436 Chenopodium quinoa HOM05D005344 ORTHO05D006444 2.3e-45 185.7 119 73.1
FAN19G0275 Fragaria x ananassa HOM05D005344 ORTHO05D006444 2.6e-44 182.2 121 76.0
MBI05_g26505_MAGBIO Magnolia biondii HOM05D005344 ORTHO05D006444 2.6e-44 182.2 105 82.9
arahy.Tifrunner.gnm1.ann1.3U1GZ3 Arachis hypogaea HOM05D005344 ORTHO05D006444 4.4e-44 181.4 105 84.8
arahy.Tifrunner.gnm1.ann1.IGJ8TG Arachis hypogaea HOM05D005344 ORTHO05D006444 1.7e-43 179.5 103 85.4
Atru.chr4.1572 Acer truncatum HOM05D005344 ORTHO05D006444 4.8e-43 177.9 133 71.4
Manes.09G054100 Manihot esculenta HOM05D005344 ORTHO05D006444 1.8e-42 176.0 119 71.4
ATR0665G498 Amborella trichopoda HOM05D005344 ORTHO05D006444 9.1e-42 173.7 129 69.8
arahy.Tifrunner.gnm1.ann1.Y1NSFR Arachis hypogaea HOM05D005344 ORTHO05D006444 5.5e-39 164.5 94 86.2
arahy.Tifrunner.gnm1.ann1.2QY3VR Arachis hypogaea HOM05D005344 ORTHO05D006444 1.2e-38 163.3 107 78.5
arahy.Tifrunner.gnm1.ann1.H9RICG Arachis hypogaea HOM05D005344 ORTHO05D006444 4.7e-38 161.4 93 84.9
arahy.Tifrunner.gnm1.ann1.ZTTZ43 Arachis hypogaea HOM05D005344 ORTHO05D006444 4.7e-38 161.4 94 85.1
Gorai.005G111500 Gossypium raimondii HOM05D005344 ORTHO05D006444 8.8e-37 157.1 100 78.0
MSTRG.22330 Avicennia marina HOM05D005344 ORTHO05D006444 2.8e-35 152.1 91 80.2
Pp3c9_11020 Physcomitrium patens HOM05D005344 ORTHO05D006444 2.8e-35 152.1 130 60.0
Mapoly0151s0020 Marchantia polymorpha HOM05D005344 ORTHO05D006444 1.7e-32 142.9 113 57.5
MBI07_g11722_MAGBIO Magnolia biondii HOM05D005344 ORTHO05D006444 5.5e-31 137.9 85 77.6
Os02g0282100 Oryza sativa ssp. japonica HOM05D005344 ORTHO05D006444 5.5e-31 137.9 141 51.8
AagrBONN_evm.TU.Sc2ySwM_117.1156 Anthoceros agrestis HOM05D005344 ORTHO05D006444 4.0e-29 131.7 99 60.6
ATR0605G109 Amborella trichopoda HOM05D005344 ORTHO05D006444 5.2e-29 131.3 92 72.8
Zm00001eb237200 Zea mays HOM05D005344 ORTHO05D006444 3.4e-28 128.6 139 49.6
Hund00462 Selenicereus undatus HOM05D005344 ORTHO05D006444 2.8e-27 125.6 119 52.1
arahy.Tifrunner.gnm1.ann1.3DP3ZG Arachis hypogaea HOM05D005344 ORTHO05D006444 1.1e-15 87.0 51 84.3
CSS0040415 Camellia sinensis var. sinensis HOM05D005344 ORTHO05D006444 7.8e-09 64.3 39 71.8
Nn5g29273 Nelumbo nucifera HOM05D005344 ORTHO05D006444 4.3e-07 58.5 32 81.2
CSS0035037 Camellia sinensis var. sinensis HOM05D005344 ORTHO05D006444 5.6e-07 58.2 39 71.8
CBR_g48744 Chara braunii HOM05D005344 ORTHO05D006444 6.2e-06 54.7 66 39.4


User provided reference genes

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