Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR102G3176 Punica granatum HOM05D002451 ORTHO05D005601 0.0e+00 2218.0 1139 100.0
QL05p020031 Quercus lobata HOM05D002451 ORTHO05D005601 0.0e+00 1210.7 1223 53.0
Dinv37977 Davidia involucrata HOM05D002451 ORTHO05D005601 0.0e+00 1201.8 1150 55.0
Cfa003647 Carpinus fangiana HOM05D002451 ORTHO05D005601 0.0e+00 1196.0 1146 53.8
GSVIVG01016980001 Vitis vinifera HOM05D002451 ORTHO05D005601 0.0e+00 1195.6 1148 53.6
CiPaw.01G231400 Carya illinoinensis HOM05D002451 ORTHO05D005601 0.0e+00 1182.5 1151 53.9
Eucgr.F03079 Eucalyptus grandis HOM05D002451 ORTHO05D005601 0.0e+00 1182.2 1101 56.1
Haze_15848 Corylus avellana HOM05D002451 ORTHO05D005601 0.0e+00 1165.2 1166 53.3
Potri.003G048800 Populus trichocarpa HOM05D002451 ORTHO05D005601 0.0e+00 1155.2 1150 53.1
Ciclev10024743m.g Citrus clementina HOM05D002451 ORTHO05D005601 0.0e+00 1152.9 1152 53.2
Atru.chr1.3524 Acer truncatum HOM05D002451 ORTHO05D005601 0.0e+00 1150.6 1152 53.5
TWI12G0408 Tripterygium wilfordii HOM05D002451 ORTHO05D005601 0.0e+00 1149.8 1155 52.8
TAR636G2911 Trochodendron aralioides HOM05D002451 ORTHO05D005601 0.0e+00 1147.5 1150 52.2
Manes.11G033500 Manihot esculenta HOM05D002451 ORTHO05D005601 0.0e+00 1143.3 1148 53.5
Prupe.3G059000 Prunus persica HOM05D002451 ORTHO05D005601 0.0e+00 1141.7 1164 52.7
Gorai.010G230600 Gossypium raimondii HOM05D002451 ORTHO05D005601 0.0e+00 1135.9 1152 52.4
MD09G1202800 Malus domestica HOM05D002451 ORTHO05D005601 0.0e+00 1135.6 1151 52.2
Duzib192G0210 Durio zibethinus HOM05D002451 ORTHO05D005601 0.0e+00 1132.5 1147 53.7
Thecc.06G100100 Theobroma cacao HOM05D002451 ORTHO05D005601 0.0e+00 1132.5 1152 52.9
Gohir.D06G197800 Gossypium hirsutum HOM05D002451 ORTHO05D005601 0.0e+00 1122.8 1152 52.1
Lj9C513G3 Lonicera japonica HOM05D002451 ORTHO05D005601 0.0e+00 1109.7 1147 52.0
COL.COLO4_30513 Corchorus olitorius HOM05D002451 ORTHO05D005601 0.0e+00 1105.1 1143 52.1
CANSAT56G2471 Cannabis sativa HOM05D002451 ORTHO05D005601 0.0e+00 1098.6 1146 51.7
RcHm_v2.0_Chr2g0140541 Rosa chinensis HOM05D002451 ORTHO05D005601 0.0e+00 1096.6 1151 50.3
Nn8g39071 Nelumbo nucifera HOM05D002451 ORTHO05D005601 0.0e+00 1089.3 1152 50.1
Sed0021872 Sechium edule HOM05D002451 ORTHO05D005601 0.0e+00 1086.6 1144 50.7
CsaV3_7G035270 Cucumis sativus L. HOM05D002451 ORTHO05D005601 0.0e+00 1085.5 1146 50.8
Actinidia32098 Actinidia chinensis HOM05D002451 ORTHO05D005601 0.0e+00 1077.4 1149 50.9
Glyma.13G354600 Glycine max HOM05D002451 ORTHO05D005601 2.3e-311 1072.4 1152 50.2
Rhsim08G0227600 Rhododendron simsii HOM05D002451 ORTHO05D005601 1.0e-309 1067.0 1213 48.7
TPR.G6596 Trifolium pratense HOM05D002451 ORTHO05D005601 1.3e-309 1066.6 1149 48.9
FAN05G4332 Fragaria x ananassa HOM05D002451 ORTHO05D005601 2.9e-309 1065.4 1147 49.6
Lalb_Chr14g0373021 Lupinus albus HOM05D002451 ORTHO05D005601 7.2e-308 1060.8 1148 49.7
Ca_01165_v3 Cicer arietinum L. HOM05D002451 ORTHO05D005601 3.0e-306 1055.4 1153 49.9
Phvul.005G166100 Phaseolus vulgaris HOM05D002451 ORTHO05D005601 1.2e-305 1053.5 1152 49.0
Medtr2g100870 Medicago truncatula HOM05D002451 ORTHO05D005601 3.3e-305 1052.0 1150 48.5
Lj1g0009957 Lotus japonicus HOM05D002451 ORTHO05D005601 8.2e-304 1047.3 1149 48.8
Gohir.A06G189400 Gossypium hirsutum HOM05D002451 ORTHO05D005601 1.4e-303 1046.6 1098 51.5
Cc04_g02550 Coffea canephora HOM05D002451 ORTHO05D005601 5.9e-302 1041.2 1154 48.1
Sopen03g039860 Solanum pennellii HOM05D002451 ORTHO05D005601 3.6e-299 1031.9 1131 48.5
Solyc03g121030.2 Solanum lycopersicum HOM05D002451 ORTHO05D005601 8.0e-299 1030.8 1136 48.1
MELO3C024437.2 Cucumis melo HOM05D002451 ORTHO05D005601 2.3e-298 1029.2 1103 50.4
FAN02G1073 Fragaria x ananassa HOM05D002451 ORTHO05D005601 5.2e-298 1028.1 1127 48.6
Medtr5g085950 Medicago truncatula HOM05D002451 ORTHO05D005601 1.2e-297 1026.9 1149 47.4
Glyma.15G019600 Glycine max HOM05D002451 ORTHO05D005601 2.6e-297 1025.8 1155 48.1
TWI75G1452 Tripterygium wilfordii HOM05D002451 ORTHO05D005601 4.8e-296 1021.5 1153 49.2
Sc10g0007590 Simmondsia chinensis HOM05D002451 ORTHO05D005601 1.9e-292 1009.6 1157 47.1
arahy.Tifrunner.gnm1.ann1.65X03I Arachis hypogaea HOM05D002451 ORTHO05D005601 3.6e-291 1005.4 1146 46.2
Migut.I00897 Erythranthe guttata HOM05D002451 ORTHO05D005601 3.0e-290 1002.3 1142 47.7
Aqoxy7G01406 Aquilegia oxysepala HOM05D002451 ORTHO05D005601 5.2e-290 1001.5 1148 47.7
arahy.Tifrunner.gnm1.ann1.T566S8 Arachis hypogaea HOM05D002451 ORTHO05D005601 7.5e-289 997.7 1145 46.3
PSO063G3373 Papaver somniferum HOM05D002451 ORTHO05D005601 8.3e-288 994.2 1147 47.3
PSO832G2466 Papaver somniferum HOM05D002451 ORTHO05D005601 8.3e-288 994.2 1150 47.7
MSTRG.11027 Avicennia marina HOM05D002451 ORTHO05D005601 1.4e-287 993.4 1148 47.6
THA.LOC104809828 Tarenaya hassleriana HOM05D002451 ORTHO05D005601 1.7e-285 986.5 1150 47.7
FvH4_6g32400 Fragaria vesca HOM05D002451 ORTHO05D005601 1.2e-278 963.8 1065 48.7
AUR62031915 Chenopodium quinoa HOM05D002451 ORTHO05D005601 2.8e-275 952.6 1153 45.8
Sp2g18530 Schrenkiella parvula HOM05D002451 ORTHO05D005601 2.6e-273 946.0 1147 45.6
Thhalv10003552m.g Eutrema salsugineum HOM05D002451 ORTHO05D005601 3.4e-273 945.7 1142 46.3
Carub.0008s0769 Capsella rubella HOM05D002451 ORTHO05D005601 9.2e-271 937.6 1148 45.5
AL8G20730 Arabidopsis lyrata HOM05D002451 ORTHO05D005601 1.0e-269 934.1 1147 44.6
AT5G48120 Arabidopsis thaliana HOM05D002451 ORTHO05D005601 8.6e-269 931.0 1148 44.9
AUR62022206 Chenopodium quinoa HOM05D002451 ORTHO05D005601 1.1e-268 930.6 1123 45.5
ECA232G2699 Erigeron canadensis HOM05D002451 ORTHO05D005601 5.2e-266 921.8 1140 44.9
vmacro18852 Vaccinium macrocarpon HOM05D002451 ORTHO05D005601 2.6e-265 919.5 1008 49.0
MBI04_g20307_MAGBIO Magnolia biondii HOM05D002451 ORTHO05D005601 3.4e-265 919.1 1225 42.8
BcaC03g17628 Brassica carinata HOM05D002451 ORTHO05D005601 7.5e-265 917.9 1137 45.1
BcaB07g30001 Brassica carinata HOM05D002451 ORTHO05D005601 2.2e-264 916.4 1145 44.8
BolC2t11683H Brassica oleracea HOM05D002451 ORTHO05D005601 1.9e-263 913.3 1138 45.1
Psat5g295800 Pisum sativum HOM05D002451 ORTHO05D005601 7.1e-263 911.4 1098 46.1
C02p56250 Brassica napus HOM05D002451 ORTHO05D005601 3.5e-262 909.1 1138 45.0
Aa31LG11G5160 Aethionema arabicum HOM05D002451 ORTHO05D005601 5.1e-261 905.2 1147 44.0
Lsat_1_v5_gn_4_97440 Lactuca sativa HOM05D002451 ORTHO05D005601 5.1e-261 905.2 1129 44.0
HanXRQChr09g0276251 Helianthus annuus HOM05D002451 ORTHO05D005601 4.3e-260 902.1 1147 44.9
BraA02t08709Z Brassica rapa HOM05D002451 ORTHO05D005601 1.6e-259 900.2 1147 44.2
A02p37220 Brassica napus HOM05D002451 ORTHO05D005601 1.1e-255 887.5 1147 44.2
CAN.G1143.14 Capsicum annuum HOM05D002451 ORTHO05D005601 1.2e-254 884.0 1022 46.6
CARHR259290 Cardamine hirsuta HOM05D002451 ORTHO05D005601 1.6e-254 883.6 1151 43.7
ATR0705G185 Amborella trichopoda HOM05D002451 ORTHO05D005601 3.5e-254 882.5 1160 43.5
Sabra03G0029300 Salix brachista HOM05D002451 ORTHO05D005601 3.0e-253 879.4 1099 46.1
Hund07601 Selenicereus undatus HOM05D002451 ORTHO05D005601 8.6e-253 877.9 1152 44.1
FAN09G4229 Fragaria x ananassa HOM05D002451 ORTHO05D005601 4.0e-250 869.0 1044 46.6
Oeu017119.1 Olea europaea HOM05D002451 ORTHO05D005601 1.7e-245 853.6 1067 45.6
Nitab4.5_0006902g0020 Nicotiana tabacum HOM05D002451 ORTHO05D005601 2.3e-245 853.2 1147 42.7
SGA_v2.0_scaffold66G22528 Striga asiatica HOM05D002451 ORTHO05D005601 1.9e-244 850.1 1149 42.7
FAN14G4820 Fragaria x ananassa HOM05D002451 ORTHO05D005601 1.9e-231 807.0 954 46.0
Zm00001eb301230 Zea mays HOM05D002451 ORTHO05D005601 1.6e-230 803.9 1152 41.0
Nitab4.5_0006467g0020 Nicotiana tabacum HOM05D002451 ORTHO05D005601 7.4e-228 795.0 1138 40.9
HPP92_007690 Vanilla planifolia HOM05D002451 ORTHO05D005601 1.0e-224 784.6 1162 39.2
ClCG09G000210 Citrullus lanatus HOM05D002451 ORTHO05D005601 4.9e-224 782.3 930 46.5
Ah.01g022090 Amaranthus hybridus HOM05D002451 ORTHO05D005601 7.1e-223 778.5 1139 39.8
EL10Ac9g21204 Beta vulgaris HOM05D002451 ORTHO05D005601 2.2e-219 766.9 1064 41.5
DCAR_023080 Daucus carota HOM05D002451 ORTHO05D005601 1.0e-216 758.1 1144 39.9
Peaxi162Scf00038g01032 Petunia axillaris HOM05D002451 ORTHO05D005601 1.6e-206 724.2 917 42.9
SEGI_26537 Sequoiadendron giganteum HOM05D002451 ORTHO05D005601 7.3e-159 565.8 1053 35.8
Pp3c9_4950 Physcomitrium patens HOM05D002451 ORTHO05D005601 9.2e-146 522.3 1200 30.7
Mapoly0036s0119 Marchantia polymorpha HOM05D002451 ORTHO05D005601 3.2e-130 470.7 1189 30.9
Os07g0177100 Oryza sativa ssp. japonica HOM05D002451 ORTHO05D005601 4.2e-130 470.3 651 42.5
unitig_88.g27601 Utricularia gibba HOM05D002451 ORTHO05D005601 1.5e-116 425.2 701 37.9
Cpa.g.sc25.8 Carica papaya HOM05D002451 ORTHO05D005601 4.2e-114 417.2 514 44.9
CSS0036196 Camellia sinensis var. sinensis HOM05D002451 ORTHO05D005601 1.8e-112 411.8 442 52.7
SMO111G0185 Selaginella moellendorffii HOM05D002451 ORTHO05D005601 7.9e-105 386.3 1128 28.9
TAR624G0206 Trochodendron aralioides HOM05D002451 ORTHO05D005601 5.7e-103 380.2 436 47.9
Aa31sc1931G10 Aethionema arabicum HOM05D002451 ORTHO05D005601 9.0e-101 372.9 529 40.5
CSS0044368 Camellia sinensis var. sinensis HOM05D002451 ORTHO05D005601 1.4e-96 359.0 341 53.7
Aa31LG11G5130 Aethionema arabicum HOM05D002451 ORTHO05D005601 3.9e-96 357.5 439 44.2
CDE05G1834 Ceratophyllum demersum HOM05D002451 ORTHO05D005601 2.6e-87 328.2 425 46.4
ClCG09G000220 Citrullus lanatus HOM05D002451 ORTHO05D005601 1.0e-83 316.2 232 66.4
CBR_g26190 Chara braunii HOM05D002451 ORTHO05D005601 6.7e-72 276.9 1275 24.4
CDE05G2530 Ceratophyllum demersum HOM05D002451 ORTHO05D005601 4.4e-63 247.7 232 53.4
TAR624G0246 Trochodendron aralioides HOM05D002451 ORTHO05D005601 1.1e-58 233.0 201 58.7
Aa31LG9G10330 Aethionema arabicum HOM05D002451 ORTHO05D005601 1.8e-56 225.7 322 41.0
QL05p020001 Quercus lobata HOM05D002451 ORTHO05D005601 1.8e-56 225.7 315 45.1
Cpa.g.sc25.5 Carica papaya HOM05D002451 ORTHO05D005601 1.6e-52 212.6 256 48.4
Cpa.g.sc25.4 Carica papaya HOM05D002451 ORTHO05D005601 2.0e-52 212.2 155 63.2
Sc17g0002930 Simmondsia chinensis HOM05D002451 ORTHO05D005601 6.1e-49 200.7 178 54.5
TAR624G0921 Trochodendron aralioides HOM05D002451 ORTHO05D005601 2.3e-43 182.2 221 42.5
Sabra03G0029200 Salix brachista HOM05D002451 ORTHO05D005601 1.5e-42 179.5 182 53.3
HPP92_007773 Vanilla planifolia HOM05D002451 ORTHO05D005601 9.2e-37 160.2 159 47.8
Psat3g036640 Pisum sativum HOM05D002451 ORTHO05D005601 4.7e-33 147.9 186 46.2
TAR624G0431 Trochodendron aralioides HOM05D002451 ORTHO05D005601 1.7e-30 139.4 119 60.5
MCO12G207 Micromonas commoda HOM05D002451 ORTHO05D005601 4.6e-28 131.3 349 30.1
Psat4g171400 Pisum sativum HOM05D002451 ORTHO05D005601 4.6e-28 131.3 137 51.1
unitig_88.g27602 Utricularia gibba HOM05D002451 ORTHO05D005601 1.1e-26 126.7 130 44.6
SEGI_23779 Sequoiadendron giganteum HOM05D002451 ORTHO05D005601 1.6e-25 122.9 116 51.7
EL10Ac9g21205 Beta vulgaris HOM05D002451 ORTHO05D005601 2.8e-25 122.1 177 41.2
HPP92_007804 Vanilla planifolia HOM05D002451 ORTHO05D005601 3.6e-25 121.7 178 39.3
A06p15140 Brassica napus HOM05D002451 ORTHO05D020166 5.2e-24 117.9 147 45.6
BraA06t24629Z Brassica rapa HOM05D002451 ORTHO05D020166 5.2e-24 117.9 147 45.6
CSS0026050 Camellia sinensis var. sinensis HOM05D002451 ORTHO05D005601 2.6e-23 115.5 96 62.5
CSS0028178 Camellia sinensis var. sinensis HOM05D002451 ORTHO05D005601 2.6e-23 115.5 96 62.5
Cpa.g.sc25.3 Carica papaya HOM05D002451 ORTHO05D005601 3.4e-23 115.2 102 61.8
Aa31LG9G10320 Aethionema arabicum HOM05D002451 ORTHO05D005601 6.4e-22 110.9 117 47.9
Zm00001eb320400 Zea mays HOM05D002451 ORTHO05D005601 3.2e-21 108.6 254 33.1
CSS0023144 Camellia sinensis var. sinensis HOM05D002451 ORTHO05D005601 3.5e-20 105.1 122 44.3
Lj1g0017121 Lotus japonicus HOM05D002451 ORTHO05D005601 1.0e-19 103.6 86 57.0
SHI11089 Sapria himalayana HOM05D002451 ORTHO05D005601 1.6e-17 96.3 75 62.7
SHI11092 Sapria himalayana HOM05D002451 ORTHO05D005601 6.2e-17 94.4 127 40.2
Zm00001eb029900 Zea mays HOM05D002451 ORTHO05D005601 6.2e-17 94.4 90 50.0
SHI11090 Sapria himalayana HOM05D002451 ORTHO05D005601 3.1e-16 92.0 76 52.6
Cre13.g605050 Chlamydomonas reinhardtii HOM05D002451 ORTHO05D005601 9.9e-15 87.0 151 34.4
SGA_v2.0_scaffold123G33404 Striga asiatica HOM05D002451 ORTHO05D005601 1.7e-14 86.3 94 46.8
Peaxi162Scf00038g01031 Petunia axillaris HOM05D002451 ORTHO05D005601 1.4e-13 83.2 55 69.1
TPR.G18837 Trifolium pratense HOM05D002451 ORTHO05D005601 9.3e-13 80.5 73 56.2
TPR.G18835 Trifolium pratense HOM05D002451 ORTHO05D005601 2.1e-12 79.3 62 59.7
vmacro17797 Vaccinium macrocarpon HOM05D000003 ORTHO05D000007 3.5e-12 78.6 75 60.0
Hund28869 Selenicereus undatus HOM05D002451 ORTHO05D005601 3.3e-10 72.0 64 57.8
Hund28828 Selenicereus undatus HOM05D002451 ORTHO05D005601 1.3e-09 70.1 68 54.4
TPR.G18859 Trifolium pratense HOM05D002451 ORTHO05D005601 6.2e-09 67.8 95 40.0
Medtr5g055460 Medicago truncatula HOM05D002451 ORTHO05D005601 3.8e-06 58.5 47 55.3


User provided reference genes

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