Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR102G3103 Punica granatum HOM05D001418 ORTHO05D003753 2.5e-93 345.5 185 100.0
Eucgr.H05149 Eucalyptus grandis HOM05D001418 ORTHO05D003753 5.0e-33 145.2 196 45.4
Manes.12G158100 Manihot esculenta HOM05D001418 ORTHO05D003753 7.7e-26 121.3 186 37.1
Thecc.01G136200 Theobroma cacao HOM05D001418 ORTHO05D003753 8.0e-23 111.3 193 37.3
Sabra07G0084500 Salix brachista HOM05D001418 ORTHO05D003753 5.2e-22 108.6 185 35.7
Potri.005G066500 Populus trichocarpa HOM05D001418 ORTHO05D003753 6.7e-22 108.2 186 34.9
TWI79G1507 Tripterygium wilfordii HOM05D001418 ORTHO05D003753 6.7e-22 108.2 185 35.7
Duzib264G0973 Durio zibethinus HOM05D001418 ORTHO05D003753 4.4e-21 105.5 186 36.6
Sc16g0009500 Simmondsia chinensis HOM05D001418 ORTHO05D003753 9.7e-21 104.4 143 39.9
ClCG02G000350 Citrullus lanatus HOM05D001418 ORTHO05D003753 1.8e-19 100.1 78 55.1
QL10p041669 Quercus lobata HOM05D001418 ORTHO05D003753 3.1e-19 99.4 197 36.0
QL10p041870 Quercus lobata HOM05D001418 ORTHO05D003753 5.3e-19 98.6 198 35.9
Cpa.g.sc1441.4 Carica papaya HOM05D001418 ORTHO05D003753 7.0e-19 98.2 193 37.8
CiPaw.04G080200 Carya illinoinensis HOM05D001418 ORTHO05D003753 7.0e-19 98.2 197 35.0
AUR62034848 Chenopodium quinoa HOM05D001418 ORTHO05D003753 9.1e-19 97.8 173 36.4
CsaV3_2G019490 Cucumis sativus L. HOM05D001418 ORTHO05D003753 1.2e-18 97.4 78 52.6
Ah.06g190930 Amaranthus hybridus HOM05D001418 ORTHO05D003753 4.5e-18 95.5 211 32.2
MELO3C023225.2 Cucumis melo HOM05D001418 ORTHO05D003753 4.5e-18 95.5 78 51.3
AUR62029588 Chenopodium quinoa HOM05D001418 ORTHO05D003753 2.2e-17 93.2 182 37.4
Ciclev10003211m.g Citrus clementina HOM05D001418 ORTHO05D003753 2.9e-17 92.8 184 35.9
Psat7g044600 Pisum sativum HOM05D001418 ORTHO05D003753 5.0e-17 92.0 119 40.3
Duzib187G1961 Durio zibethinus HOM05D001418 ORTHO05D003753 6.5e-17 91.7 193 35.8
MD00G1091900 Malus domestica HOM05D001418 ORTHO05D003753 8.5e-17 91.3 181 38.1
Sabra05G0054800 Salix brachista HOM05D001418 ORTHO05D003753 1.1e-16 90.9 78 47.4
TPR.G37392 Trifolium pratense HOM05D001418 ORTHO05D003753 1.9e-16 90.1 106 42.5
Atru.chr4.944 Acer truncatum HOM05D001418 ORTHO05D003753 2.5e-16 89.7 77 49.4
Phvul.002G274200 Phaseolus vulgaris HOM05D001418 ORTHO05D003753 4.2e-16 89.0 88 48.9
CANSAT01G1075 Cannabis sativa HOM05D001418 ORTHO05D003753 5.5e-16 88.6 78 50.0
Ah.02g114820 Amaranthus hybridus HOM05D001418 ORTHO05D003753 7.2e-16 88.2 177 34.5
Medtr8g094040 Medicago truncatula HOM05D001418 ORTHO05D003753 7.2e-16 88.2 85 42.4
Sed0024034 Sechium edule HOM05D001418 ORTHO05D003753 7.2e-16 88.2 185 39.5
Haze_25311 Corylus avellana HOM05D001418 ORTHO05D003753 9.4e-16 87.8 198 33.3
Lalb_Chr07g0184281 Lupinus albus HOM05D001418 ORTHO05D003753 9.4e-16 87.8 78 44.9
CiPaw.03G118600 Carya illinoinensis HOM05D001418 ORTHO05D003753 1.6e-15 87.0 193 34.2
THA.LOC104804402 Tarenaya hassleriana HOM05D001418 ORTHO05D003753 1.6e-15 87.0 185 33.0
BcaNung02743 Brassica carinata HOM05D001418 ORTHO05D003753 2.1e-15 86.7 187 34.8
A03p60290 Brassica napus HOM05D001418 ORTHO05D003753 2.1e-15 86.7 187 33.7
BcaNung01562 Brassica carinata HOM05D001418 ORTHO05D003753 2.7e-15 86.3 187 34.2
C07p58200 Brassica napus HOM05D001418 ORTHO05D003753 4.7e-15 85.5 187 34.2
BraA03t15071Z Brassica rapa HOM05D001418 ORTHO05D003753 4.7e-15 85.5 187 34.2
Sc06g0005400 Simmondsia chinensis HOM05D001418 ORTHO05D003753 4.7e-15 85.5 102 41.2
BolC7t46274H Brassica oleracea HOM05D001418 ORTHO05D002038 6.1e-15 85.1 186 33.9
Sed0004234 Sechium edule HOM05D001418 ORTHO05D003753 6.1e-15 85.1 110 39.1
BcaC09g51866 Brassica carinata HOM05D001418 ORTHO05D003753 8.0e-15 84.7 84 46.4
A01p07400 Brassica napus HOM05D001418 ORTHO05D003753 8.0e-15 84.7 84 46.4
C01p08160 Brassica napus HOM05D001418 ORTHO05D003753 8.0e-15 84.7 84 46.4
BolC1t00803H Brassica oleracea HOM05D001418 ORTHO05D003753 8.0e-15 84.7 84 46.4
BraA01t00689Z Brassica rapa HOM05D001418 ORTHO05D003753 8.0e-15 84.7 84 46.4
Lalb_Chr13g0296701 Lupinus albus HOM05D001418 ORTHO05D003753 8.0e-15 84.7 113 41.6
Nn1g08946 Nelumbo nucifera HOM05D001418 ORTHO05D003753 1.0e-14 84.3 149 32.9
Lalb_Chr12g0203061 Lupinus albus HOM05D001418 ORTHO05D003753 1.8e-14 83.6 183 30.6
BcaNung04827 Brassica carinata HOM05D001418 ORTHO05D003753 2.3e-14 83.2 84 45.2
Gohir.A09G005000 Gossypium hirsutum HOM05D001418 ORTHO05D003753 2.3e-14 83.2 184 34.2
THA.LOC104804459 Tarenaya hassleriana HOM05D001418 ORTHO05D003753 2.3e-14 83.2 84 46.4
AL7G21370 Arabidopsis lyrata HOM05D001418 ORTHO05D003753 3.0e-14 82.8 84 45.2
AT4G30770 Arabidopsis thaliana HOM05D001418 ORTHO05D003753 3.0e-14 82.8 84 45.2
Cfa021634 Carpinus fangiana HOM05D001418 ORTHO05D003753 3.0e-14 82.8 195 33.3
Cfa021635 Carpinus fangiana HOM05D001418 ORTHO05D003753 3.0e-14 82.8 195 33.3
Gohir.D10G108200 Gossypium hirsutum HOM05D001418 ORTHO05D003753 3.0e-14 82.8 184 33.7
CARHR238610 Cardamine hirsuta HOM05D001418 ORTHO05D003753 4.0e-14 82.4 84 45.2
Thhalv10027257m.g Eutrema salsugineum HOM05D001418 ORTHO05D003753 4.0e-14 82.4 84 46.4
Prupe.4G274100 Prunus persica HOM05D001418 ORTHO05D003753 4.0e-14 82.4 184 36.4
Lj4g0007966 Lotus japonicus HOM05D001418 ORTHO05D003753 6.8e-14 81.6 186 32.3
Glyma.08G001800 Glycine max HOM05D001418 ORTHO05D003753 8.8e-14 81.3 86 44.2
Sp7g28640 Schrenkiella parvula HOM05D001418 ORTHO05D003753 1.2e-13 80.9 84 46.4
Gorai.011G118700 Gossypium raimondii HOM05D001418 ORTHO05D003753 2.0e-13 80.1 184 32.6
AUR62006850 Chenopodium quinoa HOM05D001418 ORTHO05D003753 3.4e-13 79.3 148 37.2
Gorai.006G005900 Gossypium raimondii HOM05D001418 ORTHO05D003753 3.4e-13 79.3 183 31.7
Gohir.D09G004300 Gossypium hirsutum HOM05D001418 ORTHO05D003753 4.4e-13 79.0 183 31.7
TAR381G0240 Trochodendron aralioides HOM05D001418 ORTHO05D004504 7.5e-13 78.2 192 31.8
Gohir.A10G157222 Gossypium hirsutum HOM05D001418 ORTHO05D003753 9.8e-13 77.8 185 30.3
Haze_18313 Corylus avellana HOM05D001418 ORTHO05D003753 1.3e-12 77.4 197 31.0
QL10p041674 Quercus lobata HOM05D001418 ORTHO05D003753 1.3e-12 77.4 93 40.9
QL10p041864 Quercus lobata HOM05D001418 ORTHO05D003753 1.3e-12 77.4 93 40.9
AUR62000505 Chenopodium quinoa HOM05D001418 ORTHO05D003753 6.3e-12 75.1 204 29.9
HPP92_004456 Vanilla planifolia HOM05D001418 ORTHO05D003753 6.3e-12 75.1 126 35.7
TAR625G0656 Trochodendron aralioides HOM05D001418 ORTHO05D003753 8.3e-12 74.7 142 31.7
Carub.0007s0979 Capsella rubella HOM05D001418 ORTHO05D003753 1.4e-11 73.9 185 29.7
arahy.Tifrunner.gnm1.ann1.QAD3X4 Arachis hypogaea HOM05D001418 ORTHO05D003753 1.8e-11 73.6 139 31.7
VMungo0251G3540 Vigna mungo HOM05D001418 ORTHO05D003753 1.8e-11 73.6 108 39.8
BcaB03g12658 Brassica carinata HOM05D001418 ORTHO05D003753 2.4e-11 73.2 185 32.4
CiPaw.03G118500 Carya illinoinensis HOM05D001418 ORTHO05D003753 2.4e-11 73.2 187 30.5
TAR628G0376 Trochodendron aralioides HOM05D001418 ORTHO05D003753 2.4e-11 73.2 195 28.7
A08p19100 Brassica napus HOM05D001418 ORTHO05D003753 1.2e-10 70.9 84 42.9
BraA08t33872Z Brassica rapa HOM05D001418 ORTHO05D003753 1.2e-10 70.9 84 42.9
MBI06_g35216_MAGBIO Magnolia biondii HOM05D007511 ORTHO05D003753 1.2e-10 70.9 103 38.8
Glyma.04G210600 Glycine max HOM05D001418 ORTHO05D003753 1.6e-10 70.5 115 37.4
TAR629G3237 Trochodendron aralioides HOM05D007511 ORTHO05D003753 2.0e-10 70.1 142 35.2
BcaC01g01138 Brassica carinata HOM05D001418 ORTHO05D003753 2.7e-10 69.7 185 30.8
C03p88500 Brassica napus HOM05D001418 ORTHO05D003753 2.7e-10 69.7 185 30.8
BolC3t21160H Brassica oleracea HOM05D001418 ORTHO05D003753 2.7e-10 69.7 185 30.8
FvH4_1g24680 Fragaria vesca HOM05D001418 ORTHO05D003753 2.7e-10 69.7 67 47.8
Glyma.06G155400 Glycine max HOM05D001418 ORTHO05D003753 3.5e-10 69.3 102 41.2
HPP92_025164 Vanilla planifolia HOM05D001418 ORTHO05D003753 2.3e-09 66.6 70 41.4
HPP92_025177 Vanilla planifolia HOM05D001418 ORTHO05D003753 2.3e-09 66.6 70 41.4
CDE08G1405 Ceratophyllum demersum HOM05D007511 ORTHO05D003753 2.9e-09 66.2 144 29.9
Zm00001eb112650 Zea mays HOM05D001418 ORTHO05D003753 3.8e-09 65.9 90 37.8
FAN19G0125 Fragaria x ananassa HOM05D001418 ORTHO05D003753 5.0e-09 65.5 115 37.4
Zm00001eb202060 Zea mays HOM05D001418 ORTHO05D003753 5.0e-09 65.5 64 45.3
FAN26G3393 Fragaria x ananassa HOM05D001418 ORTHO05D003753 7.2e-08 61.6 104 35.6
Medtr8g011160 Medicago truncatula HOM05D007511 ORTHO05D003753 2.1e-07 60.1 138 31.9
MD02G1239600 Malus domestica HOM05D007511 ORTHO05D003753 2.8e-07 59.7 183 27.3
FAN10G2279 Fragaria x ananassa HOM05D001937 ORTHO05D007024 3.6e-07 59.3 148 31.8
Gohir.A11G057300 Gossypium hirsutum HOM05D001418 ORTHO05D003753 3.6e-07 59.3 72 34.7
Sed0019168 Sechium edule HOM05D007511 ORTHO05D003753 3.6e-07 59.3 178 30.3
Psat0s409g0080 Pisum sativum HOM05D007511 ORTHO05D003753 4.7e-07 58.9 64 40.6
Nn1g09148 Nelumbo nucifera HOM05D007511 ORTHO05D003753 6.1e-07 58.5 90 33.3
Os11g0195700 Oryza sativa ssp. japonica HOM05D001418 ORTHO05D003753 6.1e-07 58.5 89 37.1
Gorai.007G066200 Gossypium raimondii HOM05D001418 ORTHO05D003753 8.0e-07 58.2 72 33.3
Ca_23172_v3 Cicer arietinum L. HOM05D007511 ORTHO05D003753 1.4e-06 57.4 64 42.2
FAN03G1709 Fragaria x ananassa HOM05D007511 ORTHO05D003753 1.4e-06 57.4 148 27.0
PSO063G5504 Papaver somniferum HOM05D007511 ORTHO05D003753 1.8e-06 57.0 201 25.9
RcHm_v2.0_Chr2g0122171 Rosa chinensis HOM05D001418 ORTHO05D003753 1.8e-06 57.0 53 49.1
Duzib128G1432 Durio zibethinus HOM05D007511 ORTHO05D003753 2.3e-06 56.6 149 28.2
MD07G1077000 Malus domestica HOM05D007511 ORTHO05D003753 2.3e-06 56.6 182 30.8
Potri.007G103000 Populus trichocarpa HOM05D001418 ORTHO05D003753 2.3e-06 56.6 184 26.1
FAN01G1810 Fragaria x ananassa HOM05D007511 ORTHO05D003753 3.0e-06 56.2 142 31.7
PSO782G3115 Papaver somniferum HOM05D007511 ORTHO05D003753 3.0e-06 56.2 206 27.7
Ciclev10033674m.g Citrus clementina HOM05D007511 ORTHO05D003753 4.0e-06 55.8 152 29.6
Gohir.A11G221900 Gossypium hirsutum HOM05D007511 ORTHO05D003753 6.8e-06 55.1 141 30.5
Os12g0182000 Oryza sativa ssp. japonica HOM05D001418 ORTHO05D003753 6.8e-06 55.1 190 30.0
PGR004G1271 Punica granatum HOM05D007511 ORTHO05D003753 8.8e-06 54.7 63 39.7


User provided reference genes

Program Settings