Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR102G3095 Punica granatum HOM05D005728 ORTHO05D005733 3.1e-119 431.8 217 100.0
QL01p022229 Quercus lobata HOM05D005728 ORTHO05D005733 1.2e-38 164.1 138 60.1
Eucgr.B02498 Eucalyptus grandis HOM05D005728 ORTHO05D005733 2.1e-38 163.3 139 62.6
Thecc.09G340800 Theobroma cacao HOM05D005728 ORTHO05D005733 2.1e-38 163.3 149 57.0
RcHm_v2.0_Chr5g0059071 Rosa chinensis HOM05D005728 ORTHO05D005733 1.3e-35 154.1 131 59.5
Duzib150G0774 Durio zibethinus HOM05D005728 ORTHO05D005733 1.6e-35 153.7 131 59.5
FAN16G2914 Fragaria x ananassa HOM05D005728 ORTHO05D005733 2.1e-35 153.3 129 59.7
FvH4_3g32270 Fragaria vesca HOM05D005728 ORTHO05D005733 4.8e-35 152.1 129 58.9
FAN11G0683 Fragaria x ananassa HOM05D005728 ORTHO05D005733 4.8e-35 152.1 129 58.9
MD03G1117800 Malus domestica HOM05D005728 ORTHO05D005733 6.2e-35 151.8 137 55.5
FAN25G2087 Fragaria x ananassa HOM05D005728 ORTHO05D005733 8.1e-35 151.4 129 58.9
Manes.04G021300 Manihot esculenta HOM05D005728 ORTHO05D005733 2.4e-34 149.8 163 51.5
FAN21G3175 Fragaria x ananassa HOM05D005728 ORTHO05D005733 5.3e-34 148.7 128 58.6
CiPaw.13G113100 Carya illinoinensis HOM05D005728 ORTHO05D005733 3.4e-33 146.0 131 59.5
Duzib168G0076 Durio zibethinus HOM05D005728 ORTHO05D005733 1.7e-32 143.7 130 57.7
Potri.004G211000 Populus trichocarpa HOM05D005728 ORTHO05D005733 3.2e-31 139.4 131 51.9
Sabra04G0142500 Salix brachista HOM05D005728 ORTHO05D005733 1.2e-30 137.5 131 50.4
Hma1.2p1_0058F.1_g032530 Hydrangea macrophylla HOM05D005728 ORTHO05D005733 2.7e-30 136.3 130 56.2
MD11G1136100 Malus domestica HOM05D005728 ORTHO05D005733 3.5e-30 136.0 131 54.2
Prupe.6G101500 Prunus persica HOM05D005728 ORTHO05D005733 3.5e-30 136.0 120 58.3
Potri.009G013800 Populus trichocarpa HOM05D005728 ORTHO05D005733 4.6e-30 135.6 128 54.7
Haze_23825 Corylus avellana HOM05D005728 ORTHO05D005733 6.0e-30 135.2 131 57.3
Glyma.12G067500 Glycine max HOM05D005728 ORTHO05D005733 7.9e-30 134.8 131 52.7
Rhsim01G0216600 Rhododendron simsii HOM05D005728 ORTHO05D005733 1.0e-29 134.4 131 52.7
Glyma.12G172600 Glycine max HOM05D005728 ORTHO05D005733 1.3e-29 134.0 150 48.0
Glyma.11G146600 Glycine max HOM05D005728 ORTHO05D005733 1.8e-29 133.7 131 51.9
Gohir.D05G102800 Gossypium hirsutum HOM05D005728 ORTHO05D005733 3.9e-29 132.5 136 54.4
Phvul.005G135400 Phaseolus vulgaris HOM05D005728 ORTHO05D005733 5.1e-29 132.1 134 51.5
Ciclev10029550m.g Citrus clementina HOM05D005728 ORTHO05D005733 6.7e-29 131.7 132 50.8
TWI31G0058 Tripterygium wilfordii HOM05D005728 ORTHO05D005733 6.7e-29 131.7 137 51.1
CSS0032457 Camellia sinensis var. sinensis HOM05D005728 ORTHO05D005733 1.1e-28 131.0 131 53.4
Gorai.009G107100 Gossypium raimondii HOM05D005728 ORTHO05D005733 3.3e-28 129.4 136 53.7
Cfa011317 Carpinus fangiana HOM05D005728 ORTHO05D005733 5.7e-28 128.6 117 59.0
Gohir.A05G103100 Gossypium hirsutum HOM05D005728 ORTHO05D005733 5.7e-28 128.6 136 54.4
Sed0003209 Sechium edule HOM05D005728 ORTHO05D005733 1.3e-27 127.5 117 55.6
Gohir.A08G197900 Gossypium hirsutum HOM05D005728 ORTHO05D005733 1.6e-27 127.1 141 51.1
arahy.Tifrunner.gnm1.ann1.X5FS8C Arachis hypogaea HOM05D005728 ORTHO05D005733 3.7e-27 125.9 130 53.8
Lalb_Chr14g0374671 Lupinus albus HOM05D005728 ORTHO05D005733 3.7e-27 125.9 127 52.0
TAR629G0455 Trochodendron aralioides HOM05D005728 ORTHO05D005733 4.8e-27 125.6 118 53.4
Gohir.D08G215300 Gossypium hirsutum HOM05D005728 ORTHO05D005733 6.3e-27 125.2 138 50.7
Psat5g279440 Pisum sativum HOM05D005728 ORTHO05D005733 6.3e-27 125.2 136 50.0
TWI79G1513 Tripterygium wilfordii HOM05D005728 ORTHO05D005733 6.3e-27 125.2 128 51.6
Atru.chr3.3629 Acer truncatum HOM05D005728 ORTHO05D005733 8.2e-27 124.8 136 49.3
CANSAT54G0421 Cannabis sativa HOM05D005728 ORTHO05D005733 8.2e-27 124.8 137 53.3
Sed0004216 Sechium edule HOM05D005728 ORTHO05D005733 2.4e-26 123.2 128 51.6
MELO3C020692.2 Cucumis melo HOM05D005728 ORTHO05D005733 3.1e-26 122.9 133 50.4
Gorai.004G228900 Gossypium raimondii HOM05D005728 ORTHO05D005733 3.1e-26 122.9 138 49.3
Phvul.011G079200 Phaseolus vulgaris HOM05D005728 ORTHO05D005733 3.1e-26 122.9 125 48.8
Ca_01413_v3 Cicer arietinum L. HOM05D005728 ORTHO05D005733 5.3e-26 122.1 130 51.5
VMungo0403G0001 Vigna mungo HOM05D005728 ORTHO05D005733 1.2e-25 120.9 131 48.9
Gohir.D03G134400 Gossypium hirsutum HOM05D005728 ORTHO05D005733 2.0e-25 120.2 138 52.9
Glyma.13G326000 Glycine max HOM05D005728 ORTHO05D005733 3.4e-25 119.4 134 46.3
TPR.G11537 Trifolium pratense HOM05D005728 ORTHO05D005733 3.4e-25 119.4 137 49.6
Sc15g0002200 Simmondsia chinensis HOM05D005728 ORTHO05D005733 7.6e-25 118.2 133 48.1
TPR.G15560 Trifolium pratense HOM05D005728 ORTHO05D005733 1.0e-24 117.9 139 48.2
THA.LOC104800607 Tarenaya hassleriana HOM05D005728 ORTHO05D005733 1.7e-24 117.1 141 48.9
VMungo1080G1182 Vigna mungo HOM05D005728 ORTHO05D005733 2.9e-24 116.3 131 47.3
Cpa.g.sc216.7 Carica papaya HOM05D005728 ORTHO05D005733 8.5e-24 114.8 132 47.7
CsaV3_1G033730 Cucumis sativus L. HOM05D005728 ORTHO05D005733 8.5e-24 114.8 133 47.4
MBI07_g19310_MAGBIO Magnolia biondii HOM05D005728 ORTHO05D005733 1.4e-23 114.0 141 46.8
Gohir.A03G033900 Gossypium hirsutum HOM05D005728 ORTHO05D005733 1.9e-23 113.6 132 51.5
EL10Ac9g22516 Beta vulgaris HOM05D005728 ORTHO05D005733 2.5e-23 113.2 139 44.6
Duzib170G0319 Durio zibethinus HOM05D005728 ORTHO05D005733 4.2e-23 112.5 115 51.3
Lsat_1_v5_gn_1_65300 Lactuca sativa HOM05D005728 ORTHO05D005733 4.2e-23 112.5 130 43.1
Medtr2g094210 Medicago truncatula HOM05D005728 ORTHO05D005733 1.2e-22 110.9 129 48.1
Lalb_Chr19g0137271 Lupinus albus HOM05D005728 ORTHO05D005733 3.6e-22 109.4 131 47.3
HanXRQChr01g0016901 Helianthus annuus HOM05D005728 ORTHO05D005733 4.6e-22 109.0 136 42.6
PSO063G1604 Papaver somniferum HOM05D005728 ORTHO05D005733 4.6e-22 109.0 153 42.5
Medtr4g059310 Medicago truncatula HOM05D005728 ORTHO05D005733 7.9e-22 108.2 129 48.1
Peaxi162Scf00270g00082 Petunia axillaris HOM05D005728 ORTHO05D005733 7.9e-22 108.2 135 46.7
Lj3g0009869 Lotus japonicus HOM05D005728 ORTHO05D005733 1.0e-21 107.8 125 46.4
Ah.01g002910 Amaranthus hybridus HOM05D005728 ORTHO05D005733 1.3e-21 107.5 127 45.7
Sabra09G0007800 Salix brachista HOM05D005728 ORTHO05D005733 1.8e-21 107.1 115 51.3
Ca_19255_v3 Cicer arietinum L. HOM05D005728 ORTHO05D005733 2.3e-21 106.7 126 46.8
PSO339G2100 Papaver somniferum HOM05D005728 ORTHO05D005733 3.0e-21 106.3 153 42.5
Psat7g225080 Pisum sativum HOM05D005728 ORTHO05D005733 1.1e-20 104.4 179 39.1
Aqoxy1G01237 Aquilegia oxysepala HOM05D005728 ORTHO05D005733 1.9e-20 103.6 133 44.4
Nitab4.5_0012712g0010 Nicotiana tabacum HOM05D005728 ORTHO05D005733 1.9e-20 103.6 135 45.9
ECA238G1730 Erigeron canadensis HOM05D005728 ORTHO05D005733 2.5e-20 103.2 130 44.6
Nn2g10793 Nelumbo nucifera HOM05D005728 ORTHO05D005733 3.3e-20 102.8 130 43.8
Nitab4.5_0000650g0250 Nicotiana tabacum HOM05D005728 ORTHO05D005733 7.4e-20 101.7 122 47.5
Cc01_g11120 Coffea canephora HOM05D005728 ORTHO05D005733 9.7e-20 101.3 128 46.1
ECA248G1213 Erigeron canadensis HOM05D005728 ORTHO05D005733 9.7e-20 101.3 119 42.0
RhsimUnG0058600 Rhododendron simsii HOM05D005728 ORTHO05D005733 2.8e-19 99.8 102 49.0
DCAR_018811 Daucus carota HOM05D005728 ORTHO05D005733 8.2e-19 98.2 137 38.7
Manes.11G145200 Manihot esculenta HOM05D005728 ORTHO05D005733 8.2e-19 98.2 107 50.5
AUR62039639 Chenopodium quinoa HOM05D005728 ORTHO05D005733 1.1e-18 97.8 129 41.1
Rhsim01G0216400 Rhododendron simsii HOM05D005728 ORTHO05D005733 1.4e-18 97.4 98 50.0
AUR62024979 Chenopodium quinoa HOM05D005728 ORTHO05D005733 1.8e-18 97.1 129 41.1
Oeu059090.1 Olea europaea HOM05D005728 ORTHO05D005733 3.4e-17 92.8 129 43.4
PGSC0003DMG400008077 Solanum tuberosum HOM05D005728 ORTHO05D005733 3.4e-17 92.8 121 40.5
Solyc11g069420.2 Solanum lycopersicum HOM05D005728 ORTHO05D005733 1.3e-16 90.9 121 39.7
Sopen11g028140 Solanum pennellii HOM05D005728 ORTHO05D005733 1.3e-16 90.9 121 39.7
Hma1.2p1_0055F.1_g031560 Hydrangea macrophylla HOM05D005728 ORTHO05D005733 6.5e-16 88.6 112 50.0
C04p22970 Brassica napus HOM05D005728 ORTHO05D005733 1.1e-15 87.8 118 45.8
Carub.0004s0935 Capsella rubella HOM05D005728 ORTHO05D005733 1.4e-15 87.4 114 45.6
AL4G21610 Arabidopsis lyrata HOM05D005728 ORTHO05D005733 1.9e-15 87.0 118 44.9
A07p18980 Brassica napus HOM05D005728 ORTHO05D005733 1.9e-15 87.0 121 43.0
BraA07t29603Z Brassica rapa HOM05D005728 ORTHO05D005733 1.9e-15 87.0 121 43.0
Thhalv10017443m.g Eutrema salsugineum HOM05D005728 ORTHO05D005733 1.9e-15 87.0 117 42.7
Hma1.2p1_2468F.1_g322665 Hydrangea macrophylla HOM05D005728 ORTHO05D005733 1.9e-15 87.0 112 49.1
Ah.01g014340 Amaranthus hybridus HOM05D005728 ORTHO05D005733 2.5e-15 86.7 128 41.4
BolC4t23791H Brassica oleracea HOM05D005728 ORTHO05D005733 5.5e-15 85.5 118 44.9
CARHR121360 Cardamine hirsuta HOM05D005728 ORTHO05D005733 5.5e-15 85.5 118 44.9
AT2G28410 Arabidopsis thaliana HOM05D005728 ORTHO05D005733 7.2e-15 85.1 118 44.9
Lj3g0014252 Lotus japonicus HOM05D005728 ORTHO05D005733 7.2e-15 85.1 105 47.6
Aa31LG5G7800 Aethionema arabicum HOM05D005728 ORTHO05D005733 9.4e-15 84.7 113 44.2
CiPaw.14G080700 Carya illinoinensis HOM05D005728 ORTHO05D005733 1.2e-14 84.3 105 48.6
Nitab4.5_0000106g0140 Nicotiana tabacum HOM05D005728 ORTHO05D005733 3.6e-14 82.8 131 37.4
Gorai.003G141500 Gossypium raimondii HOM05D005728 ORTHO05D005733 1.0e-13 81.3 105 50.5
MSTRG.17803 Avicennia marina HOM05D005728 ORTHO05D005733 3.0e-13 79.7 120 41.7
BcaB06g28212 Brassica carinata HOM05D005728 ORTHO05D005733 3.0e-13 79.7 117 39.3
Sp4g11230 Schrenkiella parvula HOM05D005728 ORTHO05D005733 3.0e-13 79.7 120 39.2
SalBow3G1069 Salvia bowleyana HOM05D005728 ORTHO05D005733 8.8e-13 78.2 128 40.6
A04p21550 Brassica napus HOM05D005728 ORTHO05D005733 1.1e-12 77.8 117 38.5
BraA04t17719Z Brassica rapa HOM05D005728 ORTHO05D005733 1.1e-12 77.8 117 38.5
BcaC02g08173 Brassica carinata HOM05D005728 ORTHO05D005733 3.3e-12 76.3 117 38.5
C04p57650 Brassica napus HOM05D005728 ORTHO05D005733 3.3e-12 76.3 117 38.5
arahy.Tifrunner.gnm1.ann1.5L1A31 Arachis hypogaea HOM05D005728 ORTHO05D005733 4.4e-12 75.9 136 33.8
BolC4t27283H Brassica oleracea HOM05D005728 ORTHO05D005733 4.4e-12 75.9 117 37.6
AL8G37240 Arabidopsis lyrata HOM05D010860 ORTHO05D005733 5.7e-12 75.5 120 37.5
AT5G60650 Arabidopsis thaliana HOM05D010860 ORTHO05D005733 1.3e-11 74.3 143 36.4
SGA_v2.0_scaffold2G00890 Striga asiatica HOM05D005728 ORTHO05D005733 1.3e-11 74.3 125 38.4
ATR0048G010 Amborella trichopoda HOM05D005728 ORTHO05D005733 1.7e-11 73.9 133 40.6
A03p11060 Brassica napus HOM05D010860 ORTHO05D005733 2.8e-11 73.2 142 40.1
BraA03t10420Z Brassica rapa HOM05D010860 ORTHO05D005733 2.8e-11 73.2 142 40.1
Thhalv10014945m.g Eutrema salsugineum HOM05D010860 ORTHO05D005733 8.2e-11 71.6 140 36.4
MBI10_g13404_MAGBIO Magnolia biondii HOM05D005728 ORTHO05D005733 1.1e-10 71.2 146 36.3
CAN.G1001.28 Capsicum annuum HOM05D003943 ORTHO05D005733 3.1e-10 69.7 106 39.6
SalBow3G4069 Salvia bowleyana HOM05D005728 ORTHO05D005733 3.1e-10 69.7 130 36.2
BcaB08g36363 Brassica carinata HOM05D010860 ORTHO05D005733 4.1e-10 69.3 144 38.2
Migut.N02604 Erythranthe guttata HOM05D005728 ORTHO05D005733 4.1e-10 69.3 130 34.6
BcaB01g04667 Brassica carinata HOM05D010860 ORTHO05D005733 1.2e-09 67.8 140 34.3
arahy.Tifrunner.gnm1.ann1.C3ZM5V Arachis hypogaea HOM05D005728 ORTHO05D005733 1.5e-09 67.4 88 47.7
Peaxi162Scf00101g00083 Petunia axillaris HOM05D005728 ORTHO05D005733 1.5e-09 67.4 106 37.7
C09p53380 Brassica napus HOM05D010860 ORTHO05D005733 5.9e-09 65.5 135 37.8
BraA10t43864Z Brassica rapa HOM05D010860 ORTHO05D005733 2.2e-08 63.5 143 34.3
A10p17850 Brassica napus HOM05D010860 ORTHO05D005733 2.9e-08 63.2 143 35.7
Carub.0008s2133 Capsella rubella HOM05D010860 ORTHO05D005733 5.0e-08 62.4 149 34.2
CARHR274330 Cardamine hirsuta HOM05D010860 ORTHO05D005733 5.0e-08 62.4 148 32.4
BolC9t58211H Brassica oleracea HOM05D010860 ORTHO05D005733 1.4e-07 60.8 135 37.0
BcaC04g19726 Brassica carinata HOM05D010860 ORTHO05D005733 3.2e-07 59.7 135 37.0
Oeu030182.1 Olea europaea HOM05D005728 ORTHO05D005733 3.2e-07 59.7 110 37.3
Nitab4.5_0000196g0120 Nicotiana tabacum HOM05D005728 ORTHO05D005733 6.1e-06 55.5 117 30.8


User provided reference genes

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