Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR102G3094 Punica granatum HOM05D005900 ORTHO05D007306 2.0e-124 449.1 234 100.0
Dinv35828 Davidia involucrata HOM05D005900 ORTHO05D007306 1.3e-54 217.2 229 55.0
TAR371G1211 Trochodendron aralioides HOM05D005900 ORTHO05D007306 1.3e-49 200.7 246 48.8
GSVIVG01001102001 Vitis vinifera HOM05D005900 ORTHO05D007306 4.1e-48 195.7 225 49.3
Eucgr.B02910 Eucalyptus grandis HOM05D005900 ORTHO05D007306 5.3e-48 195.3 252 50.4
CANSAT80G1963 Cannabis sativa HOM05D005900 ORTHO05D007306 1.5e-47 193.7 228 51.3
Hma1.2p1_1494F.1_g286930 Hydrangea macrophylla HOM05D005900 ORTHO05D007306 5.9e-47 191.8 242 48.3
Sabra01G0047700 Salix brachista HOM05D005900 ORTHO05D007306 7.7e-47 191.4 221 53.8
Potri.001G068500 Populus trichocarpa HOM05D005900 ORTHO05D007306 2.2e-46 189.9 221 53.8
Dinv16498 Davidia involucrata HOM05D005900 ORTHO05D007306 3.8e-46 189.1 212 53.8
TWI36G0396 Tripterygium wilfordii HOM05D005900 ORTHO05D007306 3.8e-46 189.1 201 54.2
CANSAT80G1771 Cannabis sativa HOM05D005900 ORTHO05D007306 1.1e-45 187.6 228 50.0
Eucgr.E01503 Eucalyptus grandis HOM05D005900 ORTHO05D007306 2.5e-45 186.4 253 49.8
Nitab4.5_0000059g0460 Nicotiana tabacum HOM05D005900 ORTHO05D007306 6.1e-44 181.8 226 49.1
DCAR_030841 Daucus carota HOM05D005900 ORTHO05D007306 1.0e-43 181.0 192 51.0
QL03p048972 Quercus lobata HOM05D005900 ORTHO05D007306 1.4e-43 180.6 232 48.7
Atru.chr12.1436 Acer truncatum HOM05D005900 ORTHO05D007306 5.1e-43 178.7 232 47.0
Oeu055297.1 Olea europaea HOM05D005900 ORTHO05D007306 5.1e-43 178.7 231 46.8
Nitab4.5_0000191g0220 Nicotiana tabacum HOM05D005900 ORTHO05D007306 1.5e-42 177.2 226 48.2
CiPaw.05G100400 Carya illinoinensis HOM05D005900 ORTHO05D007306 7.4e-42 174.9 210 51.4
Peaxi162Scf00698g00117 Petunia axillaris HOM05D005900 ORTHO05D007306 2.2e-41 173.3 229 46.3
CiPaw.03G184600 Carya illinoinensis HOM05D005900 ORTHO05D007306 2.8e-41 172.9 180 55.6
Cc04_g15880 Coffea canephora HOM05D005900 ORTHO05D007306 2.8e-41 172.9 223 48.4
Sopen09g004610 Solanum pennellii HOM05D005900 ORTHO05D007306 2.8e-41 172.9 224 46.4
PGSC0003DMG400008953 Solanum tuberosum HOM05D005900 ORTHO05D007306 4.8e-41 172.2 224 45.5
RcHm_v2.0_Chr4g0428761 Rosa chinensis HOM05D005900 ORTHO05D007306 6.3e-41 171.8 235 45.5
CsaV3_4G033440 Cucumis sativus L. HOM05D005900 ORTHO05D007306 1.8e-40 170.2 242 46.7
Solyc09g009850.4 Solanum lycopersicum HOM05D005900 ORTHO05D007306 1.8e-40 170.2 224 46.0
Lsat_1_v5_gn_2_95001 Lactuca sativa HOM05D005900 ORTHO05D007306 4.1e-40 169.1 174 50.6
Ciclev10005823m.g Citrus clementina HOM05D005900 ORTHO05D007306 5.3e-40 168.7 232 47.4
TWI18G0365 Tripterygium wilfordii HOM05D005900 ORTHO05D007306 9.1e-40 167.9 214 48.1
vmacro15379 Vaccinium macrocarpon HOM05D005900 ORTHO05D007306 9.1e-40 167.9 260 42.3
CSS0005312 Camellia sinensis var. sinensis HOM05D005900 ORTHO05D007306 2.0e-39 166.8 228 47.8
Prupe.1G213900 Prunus persica HOM05D005900 ORTHO05D007306 3.4e-39 166.0 215 48.8
MSTRG.22403 Avicennia marina HOM05D005900 ORTHO05D007306 7.7e-39 164.9 235 43.0
CDE09G0879 Ceratophyllum demersum HOM05D005900 ORTHO05D007306 7.7e-39 164.9 224 47.8
Rhsim12G0016500 Rhododendron simsii HOM05D005900 ORTHO05D007306 1.0e-38 164.5 223 45.7
SGA_v2.0_scaffold154G37193 Striga asiatica HOM05D005900 ORTHO05D007306 1.3e-38 164.1 234 44.9
FvH4_4g22530 Fragaria vesca HOM05D005900 ORTHO05D007306 2.2e-38 163.3 223 45.3
FAN12G4206 Fragaria x ananassa HOM05D005900 ORTHO05D007306 2.2e-38 163.3 223 45.3
SGA_v2.0_scaffold28G11983 Striga asiatica HOM05D005900 ORTHO05D007306 2.2e-38 163.3 232 44.8
FAN07G0479 Fragaria x ananassa HOM05D005900 ORTHO05D007306 3.8e-38 162.5 223 45.3
PGSC0003DMG400022718 Solanum tuberosum HOM05D005900 ORTHO05D007306 5.0e-38 162.2 232 44.8
TAR629G1598 Trochodendron aralioides HOM05D005900 ORTHO05D007306 7.2e-37 158.3 225 44.9
Migut.C00405 Erythranthe guttata HOM05D005900 ORTHO05D007306 9.4e-37 157.9 229 45.9
FAN17G1441 Fragaria x ananassa HOM05D005900 ORTHO05D007306 9.4e-37 157.9 161 52.2
Oeu001539.2 Olea europaea HOM05D005900 ORTHO05D007306 1.6e-36 157.1 279 39.4
Migut.C01115 Erythranthe guttata HOM05D005900 ORTHO05D007306 2.1e-36 156.8 223 46.2
Solyc01g008760.4 Solanum lycopersicum HOM05D005900 ORTHO05D007306 7.9e-36 154.8 194 49.5
Gorai.002G021100 Gossypium raimondii HOM05D005900 ORTHO05D007306 1.4e-35 154.1 227 45.4
Cpa.g.sc36.199 Carica papaya HOM05D005900 ORTHO05D007306 1.8e-35 153.7 213 45.1
Sed0015511 Sechium edule HOM05D005900 ORTHO05D007306 1.8e-35 153.7 232 44.8
ClCG11G017800 Citrullus lanatus HOM05D005900 ORTHO05D007306 2.3e-35 153.3 242 44.2
Haze_24259 Corylus avellana HOM05D005900 ORTHO05D007306 3.9e-35 152.5 232 47.8
Peaxi162Scf00079g01513 Petunia axillaris HOM05D005900 ORTHO05D007306 3.9e-35 152.5 248 41.9
Thecc.02G191100 Theobroma cacao HOM05D005900 ORTHO05D007306 8.8e-35 151.4 237 45.1
MD16G1142000 Malus domestica HOM05D005900 ORTHO05D007306 1.1e-34 151.0 209 47.8
Sc06g0007790 Simmondsia chinensis HOM05D005900 ORTHO05D007306 1.1e-34 151.0 225 44.0
Gohir.D01G018900 Gossypium hirsutum HOM05D005900 ORTHO05D007306 2.6e-34 149.8 227 44.5
COL.COLO4_27171 Corchorus olitorius HOM05D005900 ORTHO05D007306 3.3e-34 149.4 244 45.1
Hund20854 Selenicereus undatus HOM05D005900 ORTHO05D007306 5.7e-34 148.7 231 45.5
Cfa011664 Carpinus fangiana HOM05D005900 ORTHO05D007306 7.4e-34 148.3 232 46.6
SalBow2G0170 Salvia bowleyana HOM05D005900 ORTHO05D007306 7.4e-34 148.3 197 46.2
ECA238G4295 Erigeron canadensis HOM05D005900 ORTHO05D007306 9.7e-34 147.9 187 48.1
Cfa010215 Carpinus fangiana HOM05D005900 ORTHO05D007306 1.3e-33 147.5 231 46.3
Gohir.A01G020300 Gossypium hirsutum HOM05D005900 ORTHO05D007306 3.7e-33 146.0 227 44.1
MD13G1131700 Malus domestica HOM05D005900 ORTHO05D007306 3.7e-33 146.0 209 46.9
MBI11_g07033_MAGBIO Magnolia biondii HOM05D005900 ORTHO05D007306 2.4e-32 143.3 230 44.3
Manes.08G100300 Manihot esculenta HOM05D005900 ORTHO05D007306 2.6e-31 139.8 156 50.0
Lj3g0021746 Lotus japonicus HOM05D005900 ORTHO05D007306 5.9e-31 138.7 231 42.0
Os01g0259900 Oryza sativa ssp. japonica HOM05D005900 ORTHO05D007306 1.7e-30 137.1 233 46.8
VMungo0331G1117 Vigna mungo HOM05D005900 ORTHO05D007306 6.5e-30 135.2 230 42.2
AUR62025013 Chenopodium quinoa HOM05D005900 ORTHO05D007306 1.1e-29 134.4 226 39.8
EL10Ac1g01696 Beta vulgaris HOM05D005900 ORTHO05D007306 1.5e-29 134.0 221 41.2
Glyma.13G175800 Glycine max HOM05D005900 ORTHO05D007306 2.5e-29 133.3 228 43.0
Os08g0422600 Oryza sativa ssp. japonica HOM05D005900 ORTHO05D007306 3.2e-29 132.9 233 42.1
AUR62006518 Chenopodium quinoa HOM05D005900 ORTHO05D007306 4.2e-29 132.5 226 39.8
VMungo0251G3272 Vigna mungo HOM05D005900 ORTHO05D007306 5.5e-29 132.1 228 42.5
PSO170G6181 Papaver somniferum HOM05D005900 ORTHO05D007306 1.2e-28 131.0 216 43.1
Lalb_Chr15g0079851 Lupinus albus HOM05D005900 ORTHO05D007306 3.6e-28 129.4 226 40.7
PSO017G3279 Papaver somniferum HOM05D005900 ORTHO05D007306 4.7e-28 129.0 181 44.2
vmacro01013 Vaccinium macrocarpon HOM05D005900 ORTHO05D007306 4.7e-28 129.0 278 36.3
CSS0033783 Camellia sinensis var. sinensis HOM05D005900 ORTHO05D007306 6.1e-28 128.6 166 50.6
Glyma.07G200400 Glycine max HOM05D005900 ORTHO05D007306 1.0e-27 127.9 228 42.5
TPR.G16445 Trifolium pratense HOM05D005900 ORTHO05D007306 1.0e-27 127.9 238 39.5
Medtr8g012410 Medicago truncatula HOM05D005900 ORTHO05D007306 8.8e-27 124.8 229 38.9
Psat4g204640 Pisum sativum HOM05D005900 ORTHO05D007306 8.8e-27 124.8 202 40.6
THA.LOC104799437 Tarenaya hassleriana HOM05D005900 ORTHO05D007306 2.6e-26 123.2 189 40.7
Ca_13888_v3 Cicer arietinum L. HOM05D005900 ORTHO05D007306 4.4e-26 122.5 226 38.9
Aa31LG1G17260 Aethionema arabicum HOM05D005900 ORTHO05D007306 7.5e-26 121.7 227 39.6
Ca_23210_v3 Cicer arietinum L. HOM05D005900 ORTHO05D007306 7.5e-26 121.7 226 37.6
arahy.Tifrunner.gnm1.ann1.UQH0GN Arachis hypogaea HOM05D005900 ORTHO05D007306 8.2e-25 118.2 236 39.0
Zm00001eb127900 Zea mays HOM05D005900 ORTHO05D007306 8.2e-25 118.2 234 38.0
Lj6g0004130 Lotus japonicus HOM05D005900 ORTHO05D007306 3.1e-24 116.3 231 41.1
arahy.Tifrunner.gnm1.ann1.5NZU5R Arachis hypogaea HOM05D005900 ORTHO05D007306 4.1e-24 115.9 236 39.0
BcaC08g46818 Brassica carinata HOM05D005900 ORTHO05D007306 5.3e-24 115.5 108 53.7
Duzib052G0736 Durio zibethinus HOM05D005900 ORTHO05D007306 5.3e-24 115.5 250 39.6
Phvul.002G231200 Phaseolus vulgaris HOM05D005900 ORTHO05D007306 2.0e-23 113.6 236 39.4
BcaB07g29751 Brassica carinata HOM05D005900 ORTHO05D007306 5.9e-23 112.1 199 38.2
BolC6t39862H Brassica oleracea HOM05D005900 ORTHO05D007306 5.9e-23 112.1 161 41.0
Sp2g27740 Schrenkiella parvula HOM05D005900 ORTHO05D007306 5.9e-23 112.1 227 38.3
BraA02t09265Z Brassica rapa HOM05D005900 ORTHO05D007306 7.7e-23 111.7 198 38.4
BcaC03g18270 Brassica carinata HOM05D005900 ORTHO05D007306 1.3e-22 110.9 198 37.9
C02p63500 Brassica napus HOM05D005900 ORTHO05D007306 1.3e-22 110.9 198 37.9
A02p43400 Brassica napus HOM05D005900 ORTHO05D007306 2.2e-22 110.2 198 37.9
BolC2t12415H Brassica oleracea HOM05D005900 ORTHO05D007306 1.9e-21 107.1 199 36.2
Thhalv10004934m.g Eutrema salsugineum HOM05D005900 ORTHO05D007306 1.9e-21 107.1 227 38.8
Aqoxy4G02969 Aquilegia oxysepala HOM05D005900 ORTHO05D007306 2.1e-20 103.6 190 38.4
C03p61480 Brassica napus HOM05D005900 ORTHO05D007306 3.4e-18 96.3 223 35.4
ATR0582G041 Amborella trichopoda HOM05D005900 ORTHO05D007306 9.8e-18 94.7 204 35.8
Cc04_g15860 Coffea canephora HOM05D005900 ORTHO05D007306 4.8e-17 92.4 78 55.1
Ca_13890_v3 Cicer arietinum L. HOM05D005900 ORTHO05D007306 8.3e-17 91.7 91 49.5
unitig_747.g21266 Utricularia gibba HOM05D005900 ORTHO05D007306 4.1e-16 89.4 89 50.6
BcaB04g19984 Brassica carinata HOM05D005900 ORTHO05D007306 9.1e-16 88.2 134 38.8
MELO3C032361.2 Cucumis melo HOM05D005900 ORTHO05D007306 4.5e-15 85.9 192 39.1
Aqoxy83s001 Aquilegia oxysepala HOM05D005900 ORTHO05D007306 1.1e-13 81.3 140 40.0
Aqoxy4G03322 Aquilegia oxysepala HOM05D005900 ORTHO05D007306 5.5e-13 79.0 140 39.3
Carub.0008s2548 Capsella rubella HOM05D005900 ORTHO05D007306 1.6e-12 77.4 186 32.3
AL8G42100 Arabidopsis lyrata HOM05D005900 ORTHO05D007306 4.7e-12 75.9 228 33.3
AT5G64680 Arabidopsis thaliana HOM05D005900 ORTHO05D007306 1.0e-11 74.7 146 34.9
Atru.chr12.1335 Acer truncatum HOM05D005900 ORTHO05D007306 3.0e-11 73.2 59 55.9
Aqoxy2G04193 Aquilegia oxysepala HOM05D005900 ORTHO05D007306 7.5e-10 68.6 125 37.6
Nn3g20876 Nelumbo nucifera HOM05D005900 ORTHO05D007306 2.9e-06 56.6 34 64.7


User provided reference genes

Program Settings