Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR102G3091 Punica granatum HOM05D000754 ORTHO05D000169 7.8e-93 344.0 197 100.0
Manes.13G109400 Manihot esculenta HOM05D000754 ORTHO05D000169 2.0e-24 116.7 186 39.2
TWI74G1229 Tripterygium wilfordii HOM05D000754 ORTHO05D000169 6.5e-23 111.7 179 39.7
COL.COLO4_11611 Corchorus olitorius HOM05D000754 ORTHO05D000169 1.1e-22 110.9 194 37.6
Manes.12G117300 Manihot esculenta HOM05D000754 ORTHO05D000169 1.2e-21 107.5 195 37.9
Sabra14G0006500 Salix brachista HOM05D000754 ORTHO05D000169 1.2e-21 107.5 183 39.3
Duzib264G0179 Durio zibethinus HOM05D000754 ORTHO05D000169 1.6e-21 107.1 195 37.4
Gohir.D11G052500 Gossypium hirsutum HOM05D000754 ORTHO05D000169 2.7e-21 106.3 194 36.6
QL06p038974 Quercus lobata HOM05D000754 ORTHO05D000169 3.6e-21 105.9 204 35.3
Gorai.007G056900 Gossypium raimondii HOM05D000754 ORTHO05D000169 7.9e-21 104.8 194 36.1
Potri.007G006900 Populus trichocarpa HOM05D000754 ORTHO05D000169 1.4e-20 104.0 185 40.0
Gohir.A11G048900 Gossypium hirsutum HOM05D000754 ORTHO05D000169 1.8e-20 103.6 194 35.6
Ciclev10027584m.g Citrus clementina HOM05D000754 ORTHO05D000169 3.0e-20 102.8 178 38.8
Duzib187G1715 Durio zibethinus HOM05D000754 ORTHO05D000169 3.0e-20 102.8 194 36.6
Prupe.6G217300 Prunus persica HOM05D000754 ORTHO05D000169 3.0e-20 102.8 219 35.6
MD02G1189300 Malus domestica HOM05D000754 ORTHO05D000169 3.9e-20 102.4 197 34.0
Gorai.008G085300 Gossypium raimondii HOM05D000754 ORTHO05D000169 1.1e-19 100.9 195 36.4
Potri.014G007100 Populus trichocarpa HOM05D000754 ORTHO05D000169 1.1e-19 100.9 200 37.5
Oeu013337.1 Olea europaea HOM05D000754 ORTHO05D000169 1.5e-19 100.5 213 35.2
Thecc.01G075900 Theobroma cacao HOM05D000754 ORTHO05D000169 1.5e-19 100.5 194 33.5
Hma1.2p1_1139F.1_g260890 Hydrangea macrophylla HOM05D000754 ORTHO05D000169 3.3e-19 99.4 217 32.7
Gohir.D12G076700 Gossypium hirsutum HOM05D000754 ORTHO05D000169 5.7e-19 98.6 195 35.9
Cc07_g07330 Coffea canephora HOM05D000754 ORTHO05D000169 2.2e-18 96.7 226 33.2
Cpa.g.sc129.74 Carica papaya HOM05D000754 ORTHO05D000169 1.4e-17 94.0 196 34.7
Gohir.A02G149900 Gossypium hirsutum HOM05D000754 ORTHO05D000169 2.4e-17 93.2 186 36.6
Gohir.D03G030500 Gossypium hirsutum HOM05D000754 ORTHO05D000169 3.1e-17 92.8 186 36.0
THA.LOC104827731 Tarenaya hassleriana HOM05D000754 ORTHO05D000169 3.1e-17 92.8 191 34.0
Gohir.A12G080000 Gossypium hirsutum HOM05D000754 ORTHO05D000169 4.1e-17 92.4 195 36.4
FAN19G0912 Fragaria x ananassa HOM05D000754 ORTHO05D000169 7.0e-17 91.7 199 36.7
Atru.chr3.1056 Acer truncatum HOM05D000754 ORTHO05D000169 9.1e-17 91.3 177 36.2
Gorai.003G032100 Gossypium raimondii HOM05D000754 ORTHO05D000169 1.2e-16 90.9 186 35.5
Duzib147G0338 Durio zibethinus HOM05D000754 ORTHO05D000169 1.5e-16 90.5 182 35.7
Oeu032433.1 Olea europaea HOM05D000754 ORTHO05D000169 2.0e-16 90.1 190 32.1
Lj7P112T12 Lonicera japonica HOM05D000754 ORTHO05D000169 2.6e-16 89.7 192 34.4
CSS0034114 Camellia sinensis var. sinensis HOM05D000754 ORTHO05D000169 4.5e-16 89.0 197 33.0
Cfa004385 Carpinus fangiana HOM05D000754 ORTHO05D000169 7.7e-16 88.2 219 32.0
Gohir.D12G076600 Gossypium hirsutum HOM05D000754 ORTHO05D000169 7.7e-16 88.2 176 36.9
CiPaw.01G002300 Carya illinoinensis HOM05D000754 ORTHO05D000169 1.0e-15 87.8 219 30.1
FAN26G0075 Fragaria x ananassa HOM05D000754 ORTHO05D000169 1.0e-15 87.8 181 35.4
Lsat_1_v5_gn_2_80220 Lactuca sativa HOM05D000754 ORTHO05D000169 1.0e-15 87.8 187 35.3
Gohir.A12G078400 Gossypium hirsutum HOM05D000754 ORTHO05D000169 1.7e-15 87.0 176 35.8
Gorai.008G085200 Gossypium raimondii HOM05D000754 ORTHO05D000169 6.5e-15 85.1 176 35.2
MD15G1300200 Malus domestica HOM05D000754 ORTHO05D000169 1.1e-14 84.3 200 32.0
arahy.Tifrunner.gnm1.ann1.449CV2 Arachis hypogaea HOM05D000754 ORTHO05D000169 1.9e-14 83.6 184 34.2
arahy.Tifrunner.gnm1.ann1.JTRU7S Arachis hypogaea HOM05D000754 ORTHO05D000169 1.9e-14 83.6 180 33.9
Rhsim08G0091200 Rhododendron simsii HOM05D000754 ORTHO05D000169 1.9e-14 83.6 253 28.5
RcHm_v2.0_Chr2g0108691 Rosa chinensis HOM05D000754 ORTHO05D000169 1.9e-14 83.6 203 35.0
CANSAT01G0483 Cannabis sativa HOM05D000754 ORTHO05D000169 4.2e-14 82.4 193 34.2
FAN23G2905 Fragaria x ananassa HOM05D000754 ORTHO05D000169 5.5e-14 82.0 181 34.3
HanXRQChr07g0189251 Helianthus annuus HOM05D000754 ORTHO05D000169 5.5e-14 82.0 183 36.6
PGR004G2429 Punica granatum HOM05D000754 ORTHO05D000169 1.6e-13 80.5 181 33.7
Rhsim08G0090600 Rhododendron simsii HOM05D000754 ORTHO05D000169 2.1e-13 80.1 251 28.3
Migut.H00326 Erythranthe guttata HOM05D000754 ORTHO05D000169 2.7e-13 79.7 189 33.9
DCAR_010801 Daucus carota HOM05D000754 ORTHO05D000169 3.6e-13 79.3 176 33.5
Glyma.01G195800 Glycine max HOM05D000754 ORTHO05D000169 3.6e-13 79.3 170 33.5
FAN28G2566 Fragaria x ananassa HOM05D000754 ORTHO05D000169 4.7e-13 79.0 181 32.6
Lalb_Chr09g0323741 Lupinus albus HOM05D000754 ORTHO05D000169 8.0e-13 78.2 174 33.9
ClCG01G017780 Citrullus lanatus HOM05D000754 ORTHO05D000169 1.0e-12 77.8 174 32.2
Glyma.17G158900 Glycine max HOM05D000754 ORTHO05D000169 3.0e-12 76.3 165 30.9
Phvul.002G009200 Phaseolus vulgaris HOM05D000754 ORTHO05D000169 5.2e-12 75.5 171 33.3
TPR.G3728 Trifolium pratense HOM05D000754 ORTHO05D000169 8.8e-12 74.7 174 31.0
Psat0ss26165g0040 Pisum sativum HOM05D000754 ORTHO05D000169 1.1e-11 74.3 175 33.1
Lj4g0006564 Lotus japonicus HOM05D000754 ORTHO05D000169 1.5e-11 73.9 176 31.8
Phvul.003G233200 Phaseolus vulgaris HOM05D000754 ORTHO05D000169 1.5e-11 73.9 178 32.0
AL334U10020 Arabidopsis lyrata HOM05D000754 ORTHO05D000169 2.6e-11 73.2 192 31.2
BcaC06g33372 Brassica carinata HOM05D000754 ORTHO05D000169 4.4e-11 72.4 250 28.4
Carub.0007s0252 Capsella rubella HOM05D000754 ORTHO05D000169 4.4e-11 72.4 234 29.5
MELO3C007655.2 Cucumis melo HOM05D000754 ORTHO05D000169 4.4e-11 72.4 182 32.4
Glyma.11G045900 Glycine max HOM05D000754 ORTHO05D000169 9.7e-11 71.2 164 32.3
vmacro18014 Vaccinium macrocarpon HOM05D000754 ORTHO05D000169 9.7e-11 71.2 77 46.8
vmacro23300 Vaccinium macrocarpon HOM05D000754 ORTHO05D000169 9.7e-11 71.2 77 46.8
DCAR_025821 Daucus carota HOM05D000754 ORTHO05D000169 1.3e-10 70.9 202 31.7
Medtr4g097440 Medicago truncatula HOM05D000754 ORTHO05D000169 1.3e-10 70.9 172 32.6
Lj4P165T20 Lonicera japonica HOM05D000754 ORTHO05D000169 1.7e-10 70.5 125 36.8
CARHR246120 Cardamine hirsuta HOM05D000754 ORTHO05D000169 2.2e-10 70.1 239 29.3
Dinv26956 Davidia involucrata HOM05D000754 ORTHO05D000169 2.2e-10 70.1 166 32.5
Eucgr.H02330 Eucalyptus grandis HOM05D000754 ORTHO05D000169 2.2e-10 70.1 152 34.2
Sp7g35380 Schrenkiella parvula HOM05D000754 ORTHO05D000169 2.8e-10 69.7 255 27.8
AT2G22850 Arabidopsis thaliana HOM05D000754 ORTHO05D000169 4.8e-10 68.9 218 29.8
CsaV3_6G044300 Cucumis sativus L. HOM05D000754 ORTHO05D000169 6.3e-10 68.6 179 34.1
Aqoxy6G02482 Aquilegia oxysepala HOM05D000754 ORTHO05D000169 1.1e-09 67.8 108 36.1
C07p62610 Brassica napus HOM05D000754 ORTHO05D000169 1.1e-09 67.8 251 27.9
Sc07g0000450 Simmondsia chinensis HOM05D000754 ORTHO05D000169 1.8e-09 67.0 238 27.7
A03p65530 Brassica napus HOM05D000754 ORTHO05D000169 2.4e-09 66.6 250 27.2
Lsat_1_v5_gn_3_86301 Lactuca sativa HOM05D000754 ORTHO05D000169 3.1e-09 66.2 185 31.4
TAR628G1392 Trochodendron aralioides HOM05D000754 ORTHO05D000169 4.1e-09 65.9 164 34.1
CAN.G1343.5 Capsicum annuum HOM05D016759 ORTHO05D000169 5.3e-09 65.5 74 45.9
Nn6g34519 Nelumbo nucifera HOM05D000754 ORTHO05D000169 5.3e-09 65.5 159 30.8
Sc03g0002510 Simmondsia chinensis HOM05D000697 ORTHO05D000169 9.1e-09 64.7 149 30.9
Ca_22096_v3 Cicer arietinum L. HOM05D000754 ORTHO05D000169 1.2e-08 64.3 184 41.8
AL7G12950 Arabidopsis lyrata HOM05D000754 ORTHO05D000169 1.6e-08 63.9 244 27.0
VMungo0251G0820 Vigna mungo HOM05D000754 ORTHO05D000169 1.6e-08 63.9 172 31.4
AT4G37730 Arabidopsis thaliana HOM05D000754 ORTHO05D000169 2.0e-08 63.5 244 26.6
Carub.0005s1612 Capsella rubella HOM05D000754 ORTHO05D000169 2.0e-08 63.5 196 26.5
Oeu033308.1 Olea europaea HOM05D000754 ORTHO05D000169 2.0e-08 63.5 199 26.6
PGSC0003DMG400005476 Solanum tuberosum HOM05D000697 ORTHO05D000169 2.6e-08 63.2 194 32.5
Glyma.05G108200 Glycine max HOM05D000754 ORTHO05D000169 5.9e-08 62.0 176 30.7
Nitab4.5_0001072g0020 Nicotiana tabacum HOM05D016759 ORTHO05D000169 5.9e-08 62.0 218 36.2
AL8G43580 Arabidopsis lyrata HOM05D000754 ORTHO05D000169 7.7e-08 61.6 190 29.5
BolC1t00145H Brassica oleracea HOM05D000754 ORTHO05D000169 7.7e-08 61.6 233 27.0
Thhalv10027117m.g Eutrema salsugineum HOM05D000754 ORTHO05D000169 1.0e-07 61.2 222 28.8
TAR376G1084 Trochodendron aralioides HOM05D000754 ORTHO05D000169 1.0e-07 61.2 163 30.7
Medtr5g015090 Medicago truncatula HOM05D000754 ORTHO05D000169 1.7e-07 60.5 164 31.1
Dinv23041 Davidia involucrata HOM05D000754 ORTHO05D000169 2.2e-07 60.1 130 37.7
Sed0020432 Sechium edule HOM05D000754 ORTHO05D000169 2.9e-07 59.7 163 39.9
Sp2g28950 Schrenkiella parvula HOM05D000754 ORTHO05D000169 3.8e-07 59.3 179 39.1
CARHR114160 Cardamine hirsuta HOM05D000754 ORTHO05D000169 5.0e-07 58.9 220 26.4
HanXRQChr14g0445391 Helianthus annuus HOM05D000754 ORTHO05D000169 5.0e-07 58.9 158 31.6
Hma1.2p1_0424F.1_g150490 Hydrangea macrophylla HOM05D000754 ORTHO05D000169 5.0e-07 58.9 183 26.2
TPR.G9335 Trifolium pratense HOM05D000754 ORTHO05D000169 5.0e-07 58.9 143 35.7
CSS0007195 Camellia sinensis var. sinensis HOM05D000754 ORTHO05D000169 6.5e-07 58.5 191 28.8
CSS0026493 Camellia sinensis var. sinensis HOM05D000754 ORTHO05D000169 6.5e-07 58.5 191 28.8
HanXRQChr12g0376421 Helianthus annuus HOM05D000754 ORTHO05D000169 1.1e-06 57.8 158 27.8
VMungo1215G0337 Vigna mungo HOM05D000754 ORTHO05D000169 1.1e-06 57.8 173 29.5
SalBow3G0289 Salvia bowleyana HOM05D000754 ORTHO05D000169 1.9e-06 57.0 189 30.2
Sp5g12320 Schrenkiella parvula HOM05D000754 ORTHO05D000169 1.9e-06 57.0 184 28.8
PGSC0003DMG400021431 Solanum tuberosum HOM05D016759 ORTHO05D000169 1.9e-06 57.0 219 37.9
AL4G12430 Arabidopsis lyrata HOM05D000754 ORTHO05D000169 2.5e-06 56.6 221 26.2
Aa31LG6G14610 Aethionema arabicum HOM05D000754 ORTHO05D000169 3.2e-06 56.2 218 26.6
A01p01320 Brassica napus HOM05D000754 ORTHO05D000169 3.2e-06 56.2 233 27.0
C01p01480 Brassica napus HOM05D000754 ORTHO05D000169 3.2e-06 56.2 233 27.0
BolC2t12498H Brassica oleracea HOM05D000754 ORTHO05D000169 3.2e-06 56.2 169 37.3
BraA01t00129Z Brassica rapa HOM05D000754 ORTHO05D000169 3.2e-06 56.2 233 27.0
Nitab4.5_0000142g0350 Nicotiana tabacum HOM05D016759 ORTHO05D000169 3.2e-06 56.2 216 35.2
SGA_v2.0_scaffold15G07496 Striga asiatica HOM05D000754 ORTHO05D000169 3.2e-06 56.2 206 27.7
Carub.0004s0198 Capsella rubella HOM05D000754 ORTHO05D000169 5.5e-06 55.5 216 30.1
A02p44090 Brassica napus HOM05D000754 ORTHO05D000169 9.4e-06 54.7 178 36.5
BraA02t09332Z Brassica rapa HOM05D000754 ORTHO05D000169 9.4e-06 54.7 178 36.5
Nn5g30657 Nelumbo nucifera HOM05D000754 ORTHO05D000169 9.4e-06 54.7 154 28.6
Psat2g172480 Pisum sativum HOM05D000754 ORTHO05D000169 9.4e-06 54.7 164 29.9


User provided reference genes

Program Settings