Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR102G3065 Punica granatum HOM05D004220 ORTHO05D006217 8.5e-213 743.4 381 100.0
Eucgr.B03437 Eucalyptus grandis HOM05D004220 ORTHO05D006217 8.0e-179 630.6 382 86.6
TWI74G0333 Tripterygium wilfordii HOM05D004220 ORTHO05D006217 6.8e-178 627.5 377 85.1
Potri.010G105300 Populus trichocarpa HOM05D004220 ORTHO05D006217 2.9e-176 622.1 382 83.0
Cpa.g.sc2.184 Carica papaya HOM05D004220 ORTHO05D006217 1.1e-175 620.2 382 83.5
Sabra08G0103700 Salix brachista HOM05D004220 ORTHO05D006217 9.2e-175 617.1 382 83.0
Manes.15G135500 Manihot esculenta HOM05D004220 ORTHO05D006217 3.5e-174 615.1 382 82.7
Haze_10865 Corylus avellana HOM05D004220 ORTHO05D006217 1.3e-173 613.2 371 84.9
Potri.008G135700 Populus trichocarpa HOM05D004220 ORTHO05D006217 1.7e-173 612.8 379 82.1
Lj4g0025833 Lotus japonicus HOM05D004220 ORTHO05D006217 3.0e-173 612.1 371 84.4
Ciclev10015633m.g Citrus clementina HOM05D004220 ORTHO05D006217 6.6e-173 610.9 375 84.0
Potri.010G105000 Populus trichocarpa HOM05D004220 ORTHO05D006217 1.1e-172 610.1 345 88.1
Ca_17252_v3 Cicer arietinum L. HOM05D004220 ORTHO05D006217 2.5e-172 609.0 366 84.2
LjContig00081g0015221 Lotus japonicus HOM05D004220 ORTHO05D006217 2.5e-172 609.0 371 84.1
Cfa015032 Carpinus fangiana HOM05D004220 ORTHO05D006217 3.3e-172 608.6 370 84.6
AL1G26830 Arabidopsis lyrata HOM05D004220 ORTHO05D006217 9.5e-172 607.1 372 83.3
BcaB02g06550 Brassica carinata HOM05D004220 ORTHO05D006217 9.5e-172 607.1 381 81.4
Thhalv10007952m.g Eutrema salsugineum HOM05D004220 ORTHO05D006217 1.2e-171 606.7 381 81.6
Glyma.05G240700 Glycine max HOM05D004220 ORTHO05D006217 1.2e-171 606.7 369 82.7
Glyma.08G047800 Glycine max HOM05D004220 ORTHO05D006217 1.2e-171 606.7 371 83.3
CARHR015340 Cardamine hirsuta HOM05D004220 ORTHO05D006217 1.6e-171 606.3 381 81.9
AT1G14810 Arabidopsis thaliana HOM05D004220 ORTHO05D006217 3.6e-171 605.1 372 83.1
arahy.Tifrunner.gnm1.ann1.GF1W8W Arachis hypogaea HOM05D004220 ORTHO05D006217 3.6e-171 605.1 371 83.3
Carub.0001s1460 Capsella rubella HOM05D004220 ORTHO05D006217 6.2e-171 604.4 372 83.1
Solyc01g005250.4 Solanum lycopersicum HOM05D004220 ORTHO05D006217 1.8e-170 602.8 373 82.0
Sopen01g001280 Solanum pennellii HOM05D004220 ORTHO05D006217 1.8e-170 602.8 373 82.0
Psat4g004640 Pisum sativum HOM05D004220 ORTHO05D006217 2.3e-170 602.4 370 83.0
Sp1g13250 Schrenkiella parvula HOM05D004220 ORTHO05D006217 2.3e-170 602.4 381 80.8
Actinidia12400 Actinidia chinensis HOM05D004220 ORTHO05D006217 4.0e-170 601.7 375 82.9
PGSC0003DMG400022796 Solanum tuberosum HOM05D004220 ORTHO05D006217 5.2e-170 601.3 379 81.0
Lalb_Chr05g0222081 Lupinus albus HOM05D004220 ORTHO05D006217 6.8e-170 600.9 368 81.5
CiPaw.06G053400 Carya illinoinensis HOM05D004220 ORTHO05D006217 8.9e-170 600.5 371 83.6
Migut.E00492 Erythranthe guttata HOM05D004220 ORTHO05D006217 1.5e-169 599.7 368 82.9
BcaB03g13081 Brassica carinata HOM05D004220 ORTHO05D006217 2.0e-169 599.4 381 81.1
ClCG07G005480 Citrullus lanatus HOM05D004220 ORTHO05D006217 2.0e-169 599.4 365 83.3
THA.LOC104805088 Tarenaya hassleriana HOM05D004220 ORTHO05D006217 2.0e-169 599.4 381 80.1
BraA06t24264Z Brassica rapa HOM05D004220 ORTHO05D006217 2.6e-169 599.0 381 80.6
Gohir.D13G025700 Gossypium hirsutum HOM05D004220 ORTHO05D006217 2.6e-169 599.0 379 80.7
VMungo0251G0500 Vigna mungo HOM05D004220 ORTHO05D006217 2.6e-169 599.0 368 82.1
A06p10860 Brassica napus HOM05D004220 ORTHO05D006217 3.4e-169 598.6 381 80.6
Sed0023691 Sechium edule HOM05D004220 ORTHO05D006217 4.4e-169 598.2 365 82.5
Thecc.02G309700 Theobroma cacao HOM05D004220 ORTHO05D006217 4.4e-169 598.2 378 80.7
A08p31810 Brassica napus HOM05D004220 ORTHO05D006217 5.8e-169 597.8 381 80.8
COL.COLO4_27642 Corchorus olitorius HOM05D004220 ORTHO05D006217 5.8e-169 597.8 382 80.9
Lalb_Chr16g0387441 Lupinus albus HOM05D004220 ORTHO05D006217 5.8e-169 597.8 369 82.1
Phvul.002G323900 Phaseolus vulgaris HOM05D004220 ORTHO05D006217 5.8e-169 597.8 369 82.1
Hund08335 Selenicereus undatus HOM05D004220 ORTHO05D006217 5.8e-169 597.8 385 81.0
Gorai.013G028900 Gossypium raimondii HOM05D004220 ORTHO05D006217 7.5e-169 597.4 379 80.5
MBI05_g37451_MAGBIO Magnolia biondii HOM05D004220 ORTHO05D006217 2.9e-168 595.5 347 86.2
BcaC05g25401 Brassica carinata HOM05D004220 ORTHO05D006217 3.7e-168 595.1 381 80.1
CANSAT78G0088 Cannabis sativa HOM05D004220 ORTHO05D006217 3.7e-168 595.1 382 79.3
CsaV3_5G014440 Cucumis sativus L. HOM05D004220 ORTHO05D006217 3.7e-168 595.1 378 79.6
Medtr8g105860 Medicago truncatula HOM05D004220 ORTHO05D006217 3.7e-168 595.1 348 85.1
PSO541G1847 Papaver somniferum HOM05D004220 ORTHO05D006217 4.9e-168 594.7 375 80.3
Atru.chr11.900 Acer truncatum HOM05D004220 ORTHO05D006217 6.4e-168 594.3 383 81.2
C05p12790 Brassica napus HOM05D004220 ORTHO05D006217 6.4e-168 594.3 381 79.8
Gohir.A13G026900 Gossypium hirsutum HOM05D004220 ORTHO05D006217 6.4e-168 594.3 379 80.2
Nn4g24652 Nelumbo nucifera HOM05D004220 ORTHO05D006217 6.4e-168 594.3 380 78.4
QL03p036195 Quercus lobata HOM05D004220 ORTHO05D006217 6.4e-168 594.3 380 80.5
BraA08t35103Z Brassica rapa HOM05D004220 ORTHO05D006217 1.4e-167 593.2 381 80.1
RcHm_v2.0_Chr4g0442761 Rosa chinensis HOM05D004220 ORTHO05D006217 1.4e-167 593.2 358 84.1
Dinv18907 Davidia involucrata HOM05D004220 ORTHO05D006217 1.9e-167 592.8 379 81.0
FvH4_4g33450 Fragaria vesca HOM05D004220 ORTHO05D006217 1.9e-167 592.8 348 85.6
BolC5t30019H Brassica oleracea HOM05D004220 ORTHO05D006217 2.4e-167 592.4 381 79.5
FAN07G0058 Fragaria x ananassa HOM05D004220 ORTHO05D006217 2.4e-167 592.4 348 85.6
FAN07G1238 Fragaria x ananassa HOM05D004220 ORTHO05D006217 2.4e-167 592.4 348 85.6
Aa31LG1G290 Aethionema arabicum HOM05D004220 ORTHO05D006217 5.4e-167 591.3 381 78.7
BcaC07g38762 Brassica carinata HOM05D004220 ORTHO05D006217 5.4e-167 591.3 381 80.3
C08p16920 Brassica napus HOM05D004220 ORTHO05D006217 5.4e-167 591.3 381 80.3
BolC8t49319H Brassica oleracea HOM05D004220 ORTHO05D006217 5.4e-167 591.3 381 80.3
FAN17G0395 Fragaria x ananassa HOM05D004220 ORTHO05D006217 5.4e-167 591.3 348 85.3
PSO302G0185 Papaver somniferum HOM05D004220 ORTHO05D006217 5.4e-167 591.3 375 80.3
FAN12G0660 Fragaria x ananassa HOM05D004220 ORTHO05D006217 7.1e-167 590.9 348 85.3
TAR371G0933 Trochodendron aralioides HOM05D004220 ORTHO05D006217 7.1e-167 590.9 381 79.8
MSTRG.13631 Avicennia marina HOM05D004220 ORTHO05D006217 9.2e-167 590.5 379 80.2
Dinv26357 Davidia involucrata HOM05D004220 ORTHO05D006217 9.2e-167 590.5 383 79.4
Lj6A736T83 Lonicera japonica HOM05D004220 ORTHO05D006217 9.2e-167 590.5 370 82.7
MELO3C010427.2 Cucumis melo HOM05D004220 ORTHO05D006217 1.6e-166 589.7 364 81.9
THA.LOC104824123 Tarenaya hassleriana HOM05D004220 ORTHO05D006217 2.1e-166 589.3 382 80.6
AUR62015160 Chenopodium quinoa HOM05D004220 ORTHO05D006217 2.7e-166 589.0 345 86.7
Prupe.1G334400 Prunus persica HOM05D004220 ORTHO05D006217 2.7e-166 589.0 348 84.5
Duzib251G0717 Durio zibethinus HOM05D004220 ORTHO05D006217 3.5e-166 588.6 356 83.1
Gorai.008G170900 Gossypium raimondii HOM05D004220 ORTHO05D006217 3.5e-166 588.6 378 79.1
Nitab4.5_0000640g0100 Nicotiana tabacum HOM05D004220 ORTHO05D006217 3.5e-166 588.6 345 85.2
Sed0000427 Sechium edule HOM05D004220 ORTHO05D006217 3.5e-166 588.6 365 81.6
Gohir.A12G154900 Gossypium hirsutum HOM05D004220 ORTHO05D006217 6.0e-166 587.8 378 78.8
Lalb_Chr09g0330781 Lupinus albus HOM05D004220 ORTHO05D006217 6.0e-166 587.8 370 80.3
Lsat_1_v5_gn_8_35340 Lactuca sativa HOM05D004220 ORTHO05D006217 7.8e-166 587.4 377 80.6
SGA_v2.0_scaffold23G10178 Striga asiatica HOM05D004220 ORTHO05D006217 7.8e-166 587.4 368 81.5
FAN22G0209 Fragaria x ananassa HOM05D004220 ORTHO05D006217 1.0e-165 587.0 348 84.8
MD13G1019500 Malus domestica HOM05D004220 ORTHO05D006217 1.3e-165 586.6 375 80.3
Sc17g0004200 Simmondsia chinensis HOM05D004220 ORTHO05D006217 1.3e-165 586.6 349 84.2
AUR62017612 Chenopodium quinoa HOM05D004220 ORTHO05D006217 1.7e-165 586.3 345 85.8
Duzib248G1338 Durio zibethinus HOM05D004220 ORTHO05D006217 2.3e-165 585.9 378 79.6
SalBow2G3345 Salvia bowleyana HOM05D004220 ORTHO05D006217 2.3e-165 585.9 387 78.6
SGA_v2.0_scaffold143G35733 Striga asiatica HOM05D004220 ORTHO05D006217 3.0e-165 585.5 377 80.6
ECA233G3753 Erigeron canadensis HOM05D004220 ORTHO05D006217 8.6e-165 583.9 347 85.3
ATR0763G027 Amborella trichopoda HOM05D004220 ORTHO05D006217 3.3e-164 582.0 363 81.8
CDE07G1395 Ceratophyllum demersum HOM05D004220 ORTHO05D006217 5.6e-164 581.3 384 77.1
Oeu044002.1 Olea europaea HOM05D004220 ORTHO05D006217 1.6e-163 579.7 383 78.1
MD16G1017700 Malus domestica HOM05D004220 ORTHO05D006217 2.1e-163 579.3 384 77.6
EL10Ac9g22864 Beta vulgaris HOM05D004220 ORTHO05D006217 4.7e-163 578.2 374 80.2
HanXRQChr12g0364941 Helianthus annuus HOM05D004220 ORTHO05D006217 4.7e-163 578.2 375 80.3
SEGI_30189 Sequoiadendron giganteum HOM05D004220 ORTHO05D006217 1.8e-162 576.2 362 79.6
CAN.G282.120 Capsicum annuum HOM05D004220 ORTHO05D006217 1.2e-161 573.5 345 82.6
Rhsim09G0088900 Rhododendron simsii HOM05D004220 ORTHO05D006217 1.2e-161 573.5 390 77.9
unitig_27.g25162 Utricularia gibba HOM05D004220 ORTHO05D006217 1.2e-161 573.5 370 80.0
Aqoxy6G01748 Aquilegia oxysepala HOM05D004220 ORTHO05D006217 6.4e-160 567.8 376 76.3
DCAR_002675 Daucus carota HOM05D004220 ORTHO05D006217 1.1e-159 567.0 364 79.9
Zm00001eb214360 Zea mays HOM05D004220 ORTHO05D006217 2.4e-159 565.8 362 77.9
DCAR_022139 Daucus carota HOM05D004220 ORTHO05D006217 4.2e-159 565.1 353 81.0
Gohir.D12G158100 Gossypium hirsutum HOM05D004220 ORTHO05D006217 2.3e-157 559.3 399 72.7
AagrBONN_evm.TU.Sc2ySwM_368.1674 Anthoceros agrestis HOM05D004220 ORTHO05D006217 3.9e-157 558.5 361 78.7
Os03g0760700 Oryza sativa ssp. japonica HOM05D004220 ORTHO05D006217 4.3e-156 555.1 366 76.5
TPR.G19271 Trifolium pratense HOM05D004220 ORTHO05D006217 5.6e-156 554.7 322 85.7
Pp3c5_10760 Physcomitrium patens HOM05D004220 ORTHO05D006217 7.3e-156 554.3 372 74.5
SMO119G0035 Selaginella moellendorffii HOM05D004220 ORTHO05D006217 3.1e-154 548.9 345 80.3
unitig_29.g31883 Utricularia gibba HOM05D004220 ORTHO05D006217 5.3e-154 548.1 358 79.6
Mapoly0086s0044 Marchantia polymorpha HOM05D004220 ORTHO05D006217 1.2e-153 547.0 362 75.7
HanXRQChr06g0171081 Helianthus annuus HOM05D004220 ORTHO05D006217 6.4e-152 541.2 384 75.8
Ah.05g168430 Amaranthus hybridus HOM05D004220 ORTHO05D006217 4.8e-147 525.0 314 84.4
Peaxi162Scf00275g00215 Petunia axillaris HOM05D004220 ORTHO05D006217 3.8e-144 515.4 385 71.2
HPP92_001024 Vanilla planifolia HOM05D004220 ORTHO05D006217 9.3e-143 510.8 322 80.1
Nitab4.5_0000198g0090 Nicotiana tabacum HOM05D004220 ORTHO05D006217 1.6e-142 510.0 296 86.1
CBR_g30041 Chara braunii HOM05D004220 ORTHO05D006217 1.0e-141 507.3 338 75.7
TAR622G1230 Trochodendron aralioides HOM05D004220 ORTHO05D006217 1.4e-138 496.9 294 83.7
MCO01G646 Micromonas commoda HOM05D004220 ORTHO05D006217 1.0e-133 480.7 356 67.7
Cre09.g389689 Chlamydomonas reinhardtii HOM05D004220 ORTHO05D006217 2.0e-129 466.5 341 69.8
Actinidia36618 Actinidia chinensis HOM05D004220 ORTHO05D006217 4.8e-123 445.3 327 72.2
PRCOL_00000291 Prasinoderma coloniale HOM05D004220 ORTHO05D006217 2.8e-115 419.5 306 69.3
GSVIVG01011646001 Vitis vinifera HOM05D004220 ORTHO05D006217 5.7e-108 395.2 222 90.1
Nn3g18412 Nelumbo nucifera HOM05D004220 ORTHO05D006217 6.1e-86 322.0 186 87.1
Cc11_g06980 Coffea canephora HOM05D004220 ORTHO05D006217 1.4e-85 320.9 188 86.7
TAR629G1713 Trochodendron aralioides HOM05D004220 ORTHO05D006217 1.0e-69 268.1 185 72.4
TAR629G0578 Trochodendron aralioides HOM05D004220 ORTHO05D006217 1.2e-68 264.6 185 71.4
MD13G1041100 Malus domestica HOM05D004220 ORTHO05D006217 2.0e-52 210.7 198 60.6
BolC8t52095H Brassica oleracea HOM05D004220 ORTHO05D001325 4.9e-51 206.1 118 85.6
BcaC05g25398 Brassica carinata HOM05D000822 ORTHO05D002021 1.1e-50 204.9 177 62.7
Aqoxy6G01744 Aquilegia oxysepala HOM05D004220 ORTHO05D017372 1.4e-50 204.5 138 72.5
C08p45410 Brassica napus HOM05D004220 ORTHO05D001325 1.9e-50 204.1 118 84.7
TAR629G0842 Trochodendron aralioides HOM05D004220 ORTHO05D006217 1.0e-48 198.4 170 64.7
TAR629G3246 Trochodendron aralioides HOM05D004220 ORTHO05D006217 1.0e-48 198.4 170 64.7
Aqoxy2G01924 Aquilegia oxysepala HOM05D004220 ORTHO05D017372 9.6e-47 191.8 125 72.8
Aqoxy7G02277 Aquilegia oxysepala HOM05D004220 ORTHO05D017372 3.6e-46 189.9 121 74.4
CsaV3_5G014420 Cucumis sativus L. HOM05D004220 ORTHO05D006217 2.0e-36 157.5 97 79.4
RcHm_v2.0_Chr2g0166251 Rosa chinensis HOM05D004220 ORTHO05D006217 7.6e-36 155.6 102 78.4
BcaC07g41538 Brassica carinata HOM05D001471 ORTHO05D001325 1.7e-32 144.4 119 70.6
CDE12G0826 Ceratophyllum demersum HOM05D004220 ORTHO05D017372 5.1e-32 142.9 113 63.7
Aqoxy3G02388 Aquilegia oxysepala HOM05D004220 ORTHO05D017372 9.6e-31 138.7 156 51.3
AL7G45370 Arabidopsis lyrata HOM05D004220 ORTHO05D006217 9.6e-31 138.7 85 83.5
HanXRQChr08g0220351 Helianthus annuus HOM05D004220 ORTHO05D006217 4.0e-29 133.3 88 77.3
QL03p036261 Quercus lobata HOM05D004220 ORTHO05D006217 6.9e-29 132.5 78 84.6
Aqoxy5G02471 Aquilegia oxysepala HOM05D004220 ORTHO05D017372 3.4e-28 130.2 114 58.8
BraA09t39195Z Brassica rapa HOM05D004220 ORTHO05D027881 4.5e-28 129.8 71 88.7
C05p12760 Brassica napus HOM05D004220 ORTHO05D027881 1.3e-27 128.3 67 89.6
Aqoxy5G02966 Aquilegia oxysepala HOM05D004220 ORTHO05D017372 2.2e-27 127.5 126 53.2
MSTRG.2121 Avicennia marina HOM05D004220 ORTHO05D017372 2.9e-27 127.1 105 64.8
Actinidia36617 Actinidia chinensis HOM05D004220 ORTHO05D006217 3.8e-27 126.7 77 81.8
Aqoxy5G02658 Aquilegia oxysepala HOM05D004220 ORTHO05D017372 3.8e-27 126.7 112 58.0
A09p36790 Brassica napus HOM05D004220 ORTHO05D027881 1.1e-26 125.2 72 84.7
BraSC56t46400Z Brassica rapa HOM05D004220 ORTHO05D027881 6.0e-25 119.4 72 83.3
TAR633G1096 Trochodendron aralioides HOM05D004220 ORTHO05D000192 5.1e-16 89.7 59 74.6
BcaB08g34410 Brassica carinata HOM05D001471 ORTHO05D001325 1.9e-15 87.8 85 61.2
HanXRQChr17g0555841 Helianthus annuus HOM05D004220 ORTHO05D006217 5.7e-15 86.3 57 75.4
Actinidia26742 Actinidia chinensis HOM05D004220 ORTHO05D006217 2.4e-13 80.9 52 75.0
Cfa024397 Carpinus fangiana HOM05D004220 ORTHO05D043712 5.0e-11 73.2 346 25.7
C09p39400 Brassica napus HOM05D004220 ORTHO05D039209 1.3e-08 65.1 40 85.0


User provided reference genes

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