Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR102G3064 Punica granatum HOM05D006119 ORTHO05D007641 2.4e-62 241.9 115 100.0
Manes.06G037000 Manihot esculenta HOM05D006119 ORTHO05D007641 4.8e-50 201.1 114 79.8
Potri.006G186500 Populus trichocarpa HOM05D006119 ORTHO05D007641 2.0e-48 195.7 114 77.2
CiPaw.15G174900 Carya illinoinensis HOM05D006119 ORTHO05D007641 3.8e-47 191.4 115 75.7
Haze_19227 Corylus avellana HOM05D006119 ORTHO05D007641 3.8e-47 191.4 111 77.5
Cfa020842 Carpinus fangiana HOM05D006119 ORTHO05D007641 8.4e-47 190.3 111 76.6
QL02p092825 Quercus lobata HOM05D006119 ORTHO05D007641 8.4e-47 190.3 111 76.6
Sabra18G0092300 Salix brachista HOM05D006119 ORTHO05D007641 1.4e-46 189.5 114 74.6
Aa31LG3G13820 Aethionema arabicum HOM05D006119 ORTHO05D007641 2.4e-46 188.7 114 74.6
Eucgr.C02591 Eucalyptus grandis HOM05D006119 ORTHO05D007641 3.2e-46 188.3 110 77.3
CSS0002774 Camellia sinensis var. sinensis HOM05D006119 ORTHO05D007641 5.4e-46 187.6 115 74.8
CSS0027400 Camellia sinensis var. sinensis HOM05D006119 ORTHO05D007641 5.4e-46 187.6 115 74.8
Eucgr.L03135 Eucalyptus grandis HOM05D006119 ORTHO05D007641 5.4e-46 187.6 109 77.1
AL8G34100 Arabidopsis lyrata HOM05D006119 ORTHO05D007641 1.2e-45 186.4 113 73.5
Potri.018G109400 Populus trichocarpa HOM05D006119 ORTHO05D007641 1.2e-45 186.4 114 73.7
Thecc.09G032800 Theobroma cacao HOM05D006119 ORTHO05D007641 1.6e-45 186.0 112 75.9
AT5G58005 Arabidopsis thaliana HOM05D006119 ORTHO05D007641 2.1e-45 185.7 113 73.5
arahy.Tifrunner.gnm1.ann1.I28AR0 Arachis hypogaea HOM05D006119 ORTHO05D007641 3.5e-45 184.9 113 74.3
Thhalv10015049m.g Eutrema salsugineum HOM05D006119 ORTHO05D007641 4.6e-45 184.5 113 73.5
Lj4g0015042 Lotus japonicus HOM05D006119 ORTHO05D007641 4.6e-45 184.5 113 77.9
Carub.0008s1855 Capsella rubella HOM05D006119 ORTHO05D007641 7.9e-45 183.7 113 71.7
BcaB01g04471 Brassica carinata HOM05D006119 ORTHO05D007641 1.3e-44 183.0 113 72.6
CARHR271810 Cardamine hirsuta HOM05D006119 ORTHO05D007641 1.3e-44 183.0 114 71.1
Gorai.009G055300 Gossypium raimondii HOM05D006119 ORTHO05D007641 1.3e-44 183.0 112 72.3
Ciclev10009941m.g Citrus clementina HOM05D006119 ORTHO05D007641 2.3e-44 182.2 114 71.1
arahy.Tifrunner.gnm1.ann1.TAM15G Arachis hypogaea HOM05D006119 ORTHO05D007641 3.9e-44 181.4 111 74.8
C03p14650 Brassica napus HOM05D006119 ORTHO05D007641 3.9e-44 181.4 113 72.6
TAR626G1228 Trochodendron aralioides HOM05D006119 ORTHO05D007641 3.9e-44 181.4 111 74.8
TAR625G1054 Trochodendron aralioides HOM05D006119 ORTHO05D007641 5.1e-44 181.0 111 75.7
Sed0003082 Sechium edule HOM05D006119 ORTHO05D007641 1.9e-43 179.1 115 71.3
RhsimUnG0039700 Rhododendron simsii HOM05D006119 ORTHO05D007641 3.3e-43 178.3 109 74.3
Ca_21116_v3 Cicer arietinum L. HOM05D006119 ORTHO05D007641 4.3e-43 177.9 114 71.9
ClCG06G012280 Citrullus lanatus HOM05D006119 ORTHO05D007641 5.6e-43 177.6 115 70.4
Hma1.2p1_0028F.1_g017420 Hydrangea macrophylla HOM05D006119 ORTHO05D007641 9.6e-43 176.8 115 68.7
FvH4_1g01100 Fragaria vesca HOM05D006119 ORTHO05D007641 1.6e-42 176.0 112 68.8
FAN19G0026 Fragaria x ananassa HOM05D006119 ORTHO05D007641 1.6e-42 176.0 112 68.8
FAN26G3335 Fragaria x ananassa HOM05D006119 ORTHO05D007641 2.1e-42 175.6 112 68.8
Migut.K00337 Erythranthe guttata HOM05D006119 ORTHO05D007641 2.8e-42 175.3 112 70.5
FAN28G1026 Fragaria x ananassa HOM05D006119 ORTHO05D007641 2.8e-42 175.3 112 68.8
Manes.14G112500 Manihot esculenta HOM05D006119 ORTHO05D007641 3.6e-42 174.9 101 79.2
FAN23G1211 Fragaria x ananassa HOM05D006119 ORTHO05D007641 4.8e-42 174.5 112 67.9
A03p12450 Brassica napus HOM05D000882 ORTHO05D001142 1.4e-41 172.9 107 72.9
BolC3t13907H Brassica oleracea HOM05D000882 ORTHO05D001142 1.4e-41 172.9 107 72.9
BraA03t10560Z Brassica rapa HOM05D000882 ORTHO05D001142 1.4e-41 172.9 107 72.9
Lsat_1_v5_gn_5_91501 Lactuca sativa HOM05D006119 ORTHO05D007641 2.4e-41 172.2 115 69.6
Oeu038007.1 Olea europaea HOM05D006119 ORTHO05D007641 2.4e-41 172.2 111 71.2
Medtr4g131150 Medicago truncatula HOM05D006119 ORTHO05D007641 3.1e-41 171.8 115 69.6
MELO3C029440.2 Cucumis melo HOM05D006119 ORTHO05D007641 2.0e-40 169.1 126 63.5
Actinidia23551 Actinidia chinensis HOM05D006119 ORTHO05D007641 3.4e-40 168.3 115 67.0
CDE05G1219 Ceratophyllum demersum HOM05D006119 ORTHO05D007641 3.4e-40 168.3 115 65.2
SGA_v2.0_scaffold206G41813 Striga asiatica HOM05D006119 ORTHO05D007641 3.4e-40 168.3 114 66.7
Peaxi162Scf00347g01022 Petunia axillaris HOM05D006119 ORTHO05D007641 5.8e-40 167.5 112 69.6
Sopen07g001370 Solanum pennellii HOM05D006119 ORTHO05D007641 5.8e-40 167.5 112 67.0
Glyma.02G202700 Glycine max HOM05D006119 ORTHO05D007641 7.6e-40 167.2 100 76.0
Cpa.g.sc46.139 Carica papaya HOM05D006119 ORTHO05D007641 1.3e-39 166.4 100 75.0
PSO111G0054 Papaver somniferum HOM05D006119 ORTHO05D007641 2.9e-39 165.2 112 67.9
Hund00673 Selenicereus undatus HOM05D006119 ORTHO05D007641 2.9e-39 165.2 109 67.9
Lalb_Chr07g0179791 Lupinus albus HOM05D006119 ORTHO05D007641 3.8e-39 164.9 100 74.0
Atru.chr7.85 Acer truncatum HOM05D006119 ORTHO05D007641 4.9e-39 164.5 107 72.0
MBI15_g26716_MAGBIO Magnolia biondii HOM05D006119 ORTHO05D007641 4.9e-39 164.5 113 68.1
MD15G1154500 Malus domestica HOM05D006119 ORTHO05D007641 4.9e-39 164.5 100 73.0
vmacro06086 Vaccinium macrocarpon HOM05D006119 ORTHO05D007641 4.9e-39 164.5 126 61.1
TWI63G1376 Tripterygium wilfordii HOM05D006119 ORTHO05D007641 8.4e-39 163.7 100 74.0
HPP92_017474 Vanilla planifolia HOM05D006119 ORTHO05D007641 8.4e-39 163.7 96 76.0
Prupe.7G260900 Prunus persica HOM05D006119 ORTHO05D007641 1.4e-38 162.9 100 73.0
Solyc07g005410.3 Solanum lycopersicum HOM05D006119 ORTHO05D007641 1.4e-38 162.9 112 65.2
COL.COLO4_18789 Corchorus olitorius HOM05D006119 ORTHO05D007641 4.2e-38 161.4 106 67.0
Sopen12g005020 Solanum pennellii HOM05D006119 ORTHO05D007641 4.2e-38 161.4 100 74.0
TPR.G39188 Trifolium pratense HOM05D006119 ORTHO05D007641 5.5e-38 161.0 116 66.4
Nitab4.5_0004815g0030 Nicotiana tabacum HOM05D006119 ORTHO05D007641 7.1e-38 160.6 134 58.2
Duzib187G0693 Durio zibethinus HOM05D006119 ORTHO05D007641 1.6e-37 159.5 104 70.2
PSO561G0054 Papaver somniferum HOM05D006119 ORTHO05D007641 1.6e-37 159.5 112 67.0
Gohir.A05G052000 Gossypium hirsutum HOM05D006119 ORTHO05D007641 2.1e-37 159.1 100 71.0
Dinv42873 Davidia involucrata HOM05D006119 ORTHO05D007641 2.7e-37 158.7 100 72.0
Dinv43227 Davidia involucrata HOM05D006119 ORTHO05D007641 2.7e-37 158.7 100 72.0
ECA234G1280 Erigeron canadensis HOM05D006119 ORTHO05D007641 2.7e-37 158.7 106 67.9
Gohir.D05G053500 Gossypium hirsutum HOM05D006119 ORTHO05D007641 2.7e-37 158.7 100 71.0
Solyc12g010150.3 Solanum lycopersicum HOM05D006119 ORTHO05D007641 2.7e-37 158.7 99 73.7
GSVIVG01023584001 Vitis vinifera HOM05D006119 ORTHO05D007641 3.5e-37 158.3 100 72.0
Zm00001eb041130 Zea mays HOM05D006119 ORTHO05D007641 3.5e-37 158.3 98 71.4
ATR0739G093 Amborella trichopoda HOM05D006119 ORTHO05D007641 4.6e-37 157.9 101 70.3
Aqoxy7G03440 Aquilegia oxysepala HOM05D006119 ORTHO05D007641 7.9e-37 157.1 98 72.4
MD02G1009100 Malus domestica HOM05D006119 ORTHO05D007641 7.9e-37 157.1 100 71.0
Rhsim03G0256600 Rhododendron simsii HOM05D006119 ORTHO05D007641 1.0e-36 156.8 128 60.2
PGSC0003DMG400007897 Solanum tuberosum HOM05D006119 ORTHO05D007641 1.0e-36 156.8 100 71.0
CANSAT11G0807 Cannabis sativa HOM05D006119 ORTHO05D007641 1.3e-36 156.4 100 68.0
Psat0ss6646g0160 Pisum sativum HOM05D006119 ORTHO05D007641 1.3e-36 156.4 102 72.5
Nn8g39847 Nelumbo nucifera HOM05D006119 ORTHO05D007641 1.8e-36 156.0 100 73.0
Os08g0441400 Oryza sativa ssp. japonica HOM05D006119 ORTHO05D007641 1.8e-36 156.0 98 72.4
Cc06_g15170 Coffea canephora HOM05D006119 ORTHO05D007641 6.7e-36 154.1 100 71.0
Peaxi162Scf00062g00419 Petunia axillaris HOM05D006119 ORTHO05D007641 8.7e-36 153.7 100 70.0
MSTRG.26287 Avicennia marina HOM05D006119 ORTHO05D007641 7.4e-35 150.6 100 69.0
Actinidia04288 Actinidia chinensis HOM05D006119 ORTHO05D007641 9.6e-35 150.2 100 67.0
Nitab4.5_0006408g0020 Nicotiana tabacum HOM05D006119 ORTHO05D007641 9.6e-35 150.2 86 74.4
Actinidia38675 Actinidia chinensis HOM05D006119 ORTHO05D007641 1.3e-34 149.8 96 69.8
RcHm_v2.0_Chr2g0085901 Rosa chinensis HOM05D006119 ORTHO05D007641 1.3e-34 149.8 100 65.0
Phvul.003G157000 Phaseolus vulgaris HOM05D006119 ORTHO05D007641 1.6e-34 149.4 95 71.6
Rhsim01G0035400 Rhododendron simsii HOM05D006119 ORTHO05D007641 2.8e-34 148.7 98 69.4
Oeu021261.1 Olea europaea HOM05D006119 ORTHO05D007641 8.1e-34 147.1 99 67.7
AUR62043251 Chenopodium quinoa HOM05D006119 ORTHO05D007641 1.8e-33 146.0 102 63.7
CsaV3_1G028790 Cucumis sativus L. HOM05D006119 ORTHO05D007641 3.1e-33 145.2 99 65.7
Sed0018834 Sechium edule HOM05D006119 ORTHO05D007641 4.0e-33 144.8 88 72.7
SalBow1G1238 Salvia bowleyana HOM05D006119 ORTHO05D007641 9.0e-33 143.7 100 65.0
PGSC0003DMG400011173 Solanum tuberosum HOM05D006119 ORTHO05D007641 9.0e-33 143.7 86 72.1
Sc18g0007620 Simmondsia chinensis HOM05D006119 ORTHO05D007641 1.7e-31 139.4 100 66.0
Glyma.17G075100 Glycine max HOM05D006119 ORTHO05D007641 4.9e-31 137.9 85 74.1
Nitab4.5_0002315g0130 Nicotiana tabacum HOM05D006119 ORTHO05D007641 8.4e-31 137.1 108 61.1
CAN.G1116.12 Capsicum annuum HOM05D006119 ORTHO05D007641 1.9e-30 136.0 96 63.5
Nitab4.5_0001478g0060 Nicotiana tabacum HOM05D006119 ORTHO05D007641 4.2e-30 134.8 109 60.6
unitig_899.g15448 Utricularia gibba HOM05D006119 ORTHO05D007641 4.2e-30 134.8 89 67.4
Nitab4.5_0001813g0020 Nicotiana tabacum HOM05D006119 ORTHO05D007641 3.5e-29 131.7 103 56.3
EL10Ac8g18851 Beta vulgaris HOM05D006119 ORTHO05D007641 6.0e-29 131.0 91 61.5
DCAR_020878 Daucus carota HOM05D006119 ORTHO05D007641 1.9e-27 125.9 87 67.8
HanXRQChr10g0314681 Helianthus annuus HOM05D006119 ORTHO05D007641 3.3e-27 125.2 100 57.0
Nitab4.5_0013449g0010 Nicotiana tabacum HOM05D006119 ORTHO05D007641 1.1e-25 120.2 96 57.3
Pp3c18_18500 Physcomitrium patens HOM05D006119 ORTHO05D007641 2.0e-24 115.9 106 51.9
Sp6g19680 Schrenkiella parvula HOM05D006119 ORTHO05D007641 5.9e-24 114.4 75 66.7
CAN.G551.35 Capsicum annuum HOM05D006119 ORTHO05D007641 8.4e-23 110.5 75 66.7
SMO137G0238 Selaginella moellendorffii HOM05D006119 ORTHO05D007641 4.2e-22 108.2 93 52.7
BcaNung07255 Brassica carinata HOM05D000882 ORTHO05D001142 7.2e-22 107.5 61 75.4
Mapoly0012s0137 Marchantia polymorpha HOM05D006119 ORTHO05D007641 1.2e-21 106.7 84 58.3
Pp3c21_10430 Physcomitrium patens HOM05D006119 ORTHO05D007641 2.3e-20 102.4 106 46.2
Aqoxy4G01852 Aquilegia oxysepala HOM05D006119 ORTHO05D007641 2.5e-19 99.0 69 63.8
SEGI_38164 Sequoiadendron giganteum HOM05D006119 ORTHO05D007641 3.3e-19 98.6 74 59.5
AagrBONN_evm.TU.Sc2ySwM_228.1886 Anthoceros agrestis HOM05D006119 ORTHO05D007641 3.1e-17 92.0 68 58.8
CDE05G1090 Ceratophyllum demersum HOM05D006119 ORTHO05D007641 2.5e-14 82.4 66 56.1
Nitab4.5_0003612g0050 Nicotiana tabacum HOM05D006119 ORTHO05D007641 6.1e-13 77.8 60 56.7
Pp3c22_3250 Physcomitrium patens HOM05D006119 ORTHO05D007641 6.9e-09 64.3 71 43.7
MBI15_g07754_MAGBIO Magnolia biondii HOM05D006119 ORTHO05D007641 9.1e-09 63.9 65 52.3
Rhsim04G0128900 Rhododendron simsii HOM05D002149 ORTHO05D002154 2.0e-08 62.8 36 77.8
PSO339G5888 Papaver somniferum HOM05D006119 ORTHO05D007641 7.7e-08 60.8 108 34.3
CiPaw.16G114400 Carya illinoinensis HOM05D006119 ORTHO05D007641 5.0e-07 58.2 38 68.4
Cre10.g466000 Chlamydomonas reinhardtii HOM05D006119 ORTHO05D007641 9.4e-06 53.9 62 46.8


User provided reference genes

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