Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR102G3014 Punica granatum HOM05D008031 ORTHO05D010063 3.6e-94 348.2 170 100.0
Manes.04G151400 Manihot esculenta HOM05D008031 ORTHO05D010063 8.1e-38 161.0 170 54.1
QL05p000882 Quercus lobata HOM05D008031 ORTHO05D010063 1.4e-34 150.2 170 52.9
QL05p001111 Quercus lobata HOM05D008031 ORTHO05D010063 1.4e-34 150.2 170 52.9
Potri.001G162100 Populus trichocarpa HOM05D008031 ORTHO05D010063 5.4e-34 148.3 170 50.6
Atru.chr1.4165 Acer truncatum HOM05D008031 ORTHO05D010063 7.1e-34 147.9 171 51.5
CiPaw.02G130600 Carya illinoinensis HOM05D008031 ORTHO05D010063 1.6e-33 146.7 172 49.4
Ciclev10027015m.g Citrus clementina HOM05D008031 ORTHO05D010063 1.1e-31 140.6 203 43.3
Haze_16140 Corylus avellana HOM05D001728 ORTHO05D004321 9.5e-31 137.5 167 47.9
Eucgr.J02592 Eucalyptus grandis HOM05D008031 ORTHO05D010063 9.5e-31 137.5 171 48.5
Atru.chr1.4161 Acer truncatum HOM05D008031 ORTHO05D010063 1.2e-30 137.1 170 45.9
GSVIVG01016662001 Vitis vinifera HOM05D008031 ORTHO05D010063 2.1e-30 136.3 164 48.2
Thecc.06G130800 Theobroma cacao HOM05D008031 ORTHO05D010063 2.8e-30 136.0 170 49.4
COL.COLO4_30875 Corchorus olitorius HOM05D008031 ORTHO05D010063 8.1e-30 134.4 162 48.8
TAR626G1534 Trochodendron aralioides HOM05D008031 ORTHO05D010063 1.1e-29 134.0 170 47.1
Hma1.2p1_0090F.1_g045750 Hydrangea macrophylla HOM05D008031 ORTHO05D010063 4.0e-29 132.1 172 50.0
Hma1.2p1_2628F.1_g325675 Hydrangea macrophylla HOM05D008031 ORTHO05D010063 4.0e-29 132.1 172 50.0
CiPaw.01G211000 Carya illinoinensis HOM05D008031 ORTHO05D010063 5.2e-29 131.7 172 48.8
TWI14G1127 Tripterygium wilfordii HOM05D008031 ORTHO05D010063 1.2e-28 130.6 170 47.1
CSS0025062 Camellia sinensis var. sinensis HOM05D001728 ORTHO05D004321 1.5e-28 130.2 173 46.8
Potri.003G073200 Populus trichocarpa HOM05D008031 ORTHO05D010063 3.4e-28 129.0 164 47.6
MBI19_g32875_MAGBIO Magnolia biondii HOM05D008031 ORTHO05D010063 7.6e-28 127.9 174 47.7
Cfa003457 Carpinus fangiana HOM05D008031 ORTHO05D010063 6.4e-27 124.8 171 45.6
Actinidia24421 Actinidia chinensis HOM05D001728 ORTHO05D004321 2.4e-26 122.9 172 45.3
CANSAT56G3277 Cannabis sativa HOM05D008031 ORTHO05D010063 4.1e-26 122.1 169 41.4
Gohir.D10G051032 Gossypium hirsutum HOM05D001728 ORTHO05D004321 4.1e-26 122.1 170 45.9
Prupe.3G030600 Prunus persica HOM05D008031 ORTHO05D010063 4.1e-26 122.1 170 46.5
Gorai.011G054900 Gossypium raimondii HOM05D001728 ORTHO05D004321 7.1e-26 121.3 170 45.9
Actinidia21841 Actinidia chinensis HOM05D008031 ORTHO05D010063 9.2e-26 120.9 172 45.3
Gohir.A10G048037 Gossypium hirsutum HOM05D001728 ORTHO05D004321 9.2e-26 120.9 170 45.3
Glyma.07G046300 Glycine max HOM05D008031 ORTHO05D010063 1.6e-25 120.2 161 46.0
Peaxi162Scf00038g02327 Petunia axillaris HOM05D008031 ORTHO05D010063 1.3e-24 117.1 177 44.1
Nitab4.5_0006338g0010 Nicotiana tabacum HOM05D008031 ORTHO05D010063 2.3e-24 116.3 173 42.2
Oeu019510.1 Olea europaea HOM05D008031 ORTHO05D010063 3.0e-24 115.9 165 41.2
Sopen03g041440 Solanum pennellii HOM05D008031 ORTHO05D010063 3.0e-24 115.9 174 44.3
Lj3g0013752 Lotus japonicus HOM05D008031 ORTHO05D010063 6.6e-24 114.8 170 42.9
Phvul.010G122700 Phaseolus vulgaris HOM05D008031 ORTHO05D010063 8.6e-24 114.4 163 46.0
Solyc03g123670.3 Solanum lycopersicum HOM05D008031 ORTHO05D010063 1.1e-23 114.0 174 43.7
MELO3C022708.2 Cucumis melo HOM05D008031 ORTHO05D010063 3.3e-23 112.5 160 42.5
PGSC0003DMG400009151 Solanum tuberosum HOM05D008031 ORTHO05D010063 3.3e-23 112.5 172 43.0
ClCG07G014260 Citrullus lanatus HOM05D008031 ORTHO05D010063 5.6e-23 111.7 164 43.3
VMungo0331G1222 Vigna mungo HOM05D008031 ORTHO05D010063 5.6e-23 111.7 174 44.3
Cpa.g.sc25.199 Carica papaya HOM05D008031 ORTHO05D010063 1.6e-22 110.2 162 42.0
FvH4_6g35970 Fragaria vesca HOM05D008031 ORTHO05D010063 4.7e-22 108.6 169 43.8
FAN02G3240 Fragaria x ananassa HOM05D008031 ORTHO05D010063 4.7e-22 108.6 169 42.6
FAN09G4453 Fragaria x ananassa HOM05D008031 ORTHO05D010063 4.7e-22 108.6 169 43.8
FAN14G4753 Fragaria x ananassa HOM05D008031 ORTHO05D010063 4.7e-22 108.6 169 43.8
CsaV3_3G031060 Cucumis sativus L. HOM05D008031 ORTHO05D010063 6.2e-22 108.2 160 41.2
MD09G1172200 Malus domestica HOM05D008031 ORTHO05D010063 1.4e-21 107.1 150 44.0
Cc04_g00650 Coffea canephora HOM05D008031 ORTHO05D010063 4.0e-21 105.5 174 43.1
Rhsim08G0245200 Rhododendron simsii HOM05D008031 ORTHO05D010063 6.9e-21 104.8 173 42.8
Duzib235G0155 Durio zibethinus HOM05D008031 ORTHO05D010063 8.9e-21 104.4 141 46.8
Lalb_Chr10g0101091 Lupinus albus HOM05D008031 ORTHO05D010063 1.2e-20 104.0 172 41.3
Medtr8g023390 Medicago truncatula HOM05D008031 ORTHO05D010063 1.2e-20 104.0 158 43.0
MD17G1154700 Malus domestica HOM05D008031 ORTHO05D010063 1.5e-20 103.6 150 43.3
RcHm_v2.0_Chr2g0148091 Rosa chinensis HOM05D008031 ORTHO05D010063 2.6e-20 102.8 169 42.0
FAN05G2192 Fragaria x ananassa HOM05D008031 ORTHO05D010063 4.4e-20 102.1 169 41.4
Nitab4.5_0006966g0010 Nicotiana tabacum HOM05D008031 ORTHO05D010063 1.7e-19 100.1 171 39.2
DCAR_022641 Daucus carota HOM05D008031 ORTHO05D010063 2.9e-19 99.4 169 42.6
Lsat_1_v5_gn_4_90600 Lactuca sativa HOM05D008031 ORTHO05D010063 8.4e-19 97.8 155 43.9
SGA_v2.0_scaffold71G23934 Striga asiatica HOM05D008031 ORTHO05D010063 1.1e-18 97.4 166 39.2
arahy.Tifrunner.gnm1.ann1.8JA41T Arachis hypogaea HOM05D008031 ORTHO05D010063 2.4e-18 96.3 172 40.1
Migut.I01137 Erythranthe guttata HOM05D008031 ORTHO05D010063 7.1e-18 94.7 158 38.6
Oeu053417.1 Olea europaea HOM05D008031 ORTHO05D010063 1.6e-17 93.6 164 36.0
Hund18631 Selenicereus undatus HOM05D008031 ORTHO05D010063 2.1e-17 93.2 181 39.2
arahy.Tifrunner.gnm1.ann1.PVL51W Arachis hypogaea HOM05D008031 ORTHO05D010063 2.7e-17 92.8 169 40.2
arahy.Tifrunner.gnm1.ann1.CKB8X1 Arachis hypogaea HOM05D008031 ORTHO05D010063 1.3e-16 90.5 175 37.7
Sed0024761 Sechium edule HOM05D008031 ORTHO05D010063 1.3e-16 90.5 164 38.4
Dinv20378 Davidia involucrata HOM05D001728 ORTHO05D004321 1.7e-16 90.1 113 48.7
TPR.G29474 Trifolium pratense HOM05D008031 ORTHO05D010063 8.7e-16 87.8 164 39.0
Aqoxy7G04192 Aquilegia oxysepala HOM05D008031 ORTHO05D010063 3.3e-15 85.9 180 38.3
Glyma.16G014500 Glycine max HOM05D008031 ORTHO05D010063 5.6e-15 85.1 161 37.3
Ah.08g217400 Amaranthus hybridus HOM05D008031 ORTHO05D010063 1.6e-14 83.6 177 37.9
Eucgr.I02164 Eucalyptus grandis HOM05D008031 ORTHO05D010063 3.4e-12 75.9 159 37.1
Oeu015468.1 Olea europaea HOM05D008031 ORTHO05D010063 4.5e-12 75.5 161 34.8
MBI18_g04556_MAGBIO Magnolia biondii HOM05D005099 ORTHO05D006087 3.9e-08 62.4 169 30.2
Thecc.04G288600 Theobroma cacao HOM05D005099 ORTHO05D006087 3.9e-08 62.4 184 28.3
Rhsim02G0007200 Rhododendron simsii HOM05D005099 ORTHO05D006087 5.1e-08 62.0 182 29.1
Hma1.2p1_0804F.1_g221070 Hydrangea macrophylla HOM05D005099 ORTHO05D006087 6.7e-08 61.6 180 28.3
SalBow6G0345 Salvia bowleyana HOM05D008031 ORTHO05D010063 6.7e-08 61.6 163 35.0
Sabra08G0151700 Salix brachista HOM05D005099 ORTHO05D006087 8.7e-08 61.2 185 27.0
Actinidia14282 Actinidia chinensis HOM05D005099 ORTHO05D006087 1.5e-07 60.5 179 31.3
Dinv29728 Davidia involucrata HOM05D005099 ORTHO05D006087 1.9e-07 60.1 177 25.4
Duzib212G0134 Durio zibethinus HOM05D005099 ORTHO05D006087 1.9e-07 60.1 178 28.7
HPP92_016651 Vanilla planifolia HOM05D042795 ORTHO05D010063 1.9e-07 60.1 156 34.0
CiPaw.01G145600 Carya illinoinensis HOM05D005099 ORTHO05D006087 2.5e-07 59.7 181 27.6
Ciclev10006010m.g Citrus clementina HOM05D005099 ORTHO05D006087 2.5e-07 59.7 179 27.9
Haze_01169 Corylus avellana HOM05D005099 ORTHO05D006087 2.5e-07 59.7 175 29.1
Dinv44353 Davidia involucrata HOM05D005099 ORTHO05D006087 2.5e-07 59.7 181 27.6
SEGI_30103 Sequoiadendron giganteum HOM05D036824 ORTHO05D010063 2.5e-07 59.7 171 33.3
SEGI_39614 Sequoiadendron giganteum HOM05D036824 ORTHO05D010063 2.5e-07 59.7 171 33.3
MSTRG.9544 Avicennia marina HOM05D008031 ORTHO05D010063 3.3e-07 59.3 150 34.0
Nn3g21536 Nelumbo nucifera HOM05D005099 ORTHO05D006087 4.3e-07 58.9 179 30.2
Potri.008G219500 Populus trichocarpa HOM05D005099 ORTHO05D006087 4.3e-07 58.9 187 26.7
THA.LOC104827334 Tarenaya hassleriana HOM05D005099 ORTHO05D006087 4.3e-07 58.9 193 29.0
CANSAT78G2455 Cannabis sativa HOM05D005099 ORTHO05D006087 5.6e-07 58.5 191 29.3
CSS0011820 Camellia sinensis var. sinensis HOM05D005099 ORTHO05D006087 7.4e-07 58.2 171 30.4
Duzib151G0929 Durio zibethinus HOM05D005099 ORTHO05D006087 7.4e-07 58.2 188 28.2
CSS0049831 Camellia sinensis var. sinensis HOM05D005099 ORTHO05D006087 9.6e-07 57.8 176 28.4
CDE05G1539 Ceratophyllum demersum HOM05D008031 ORTHO05D010063 9.6e-07 57.8 173 31.2
Manes.15G010800 Manihot esculenta HOM05D005099 ORTHO05D006087 9.6e-07 57.8 175 30.9
MSTRG.3894 Avicennia marina HOM05D005099 ORTHO05D006087 2.1e-06 56.6 172 31.4
ATR0693G064 Amborella trichopoda HOM05D005099 ORTHO05D006087 4.8e-06 55.5 165 32.1
Cfa015424 Carpinus fangiana HOM05D005099 ORTHO05D006087 4.8e-06 55.5 180 29.4
AUR62018071 Chenopodium quinoa HOM05D005099 ORTHO05D006087 4.8e-06 55.5 180 29.4
CsaV3_6G023860 Cucumis sativus L. HOM05D005099 ORTHO05D006087 4.8e-06 55.5 172 29.7
CiPaw.02G080200 Carya illinoinensis HOM05D005099 ORTHO05D006087 6.2e-06 55.1 180 27.2
AUR62015274 Chenopodium quinoa HOM05D005099 ORTHO05D006087 6.2e-06 55.1 180 29.4
SalBow2G2334 Salvia bowleyana HOM05D005099 ORTHO05D006087 6.2e-06 55.1 171 29.8
Oeu033813.1 Olea europaea HOM05D005099 ORTHO05D006087 8.1e-06 54.7 178 30.9
Peaxi162Scf00065g00138 Petunia axillaris HOM05D005099 ORTHO05D006087 8.1e-06 54.7 196 28.6


User provided reference genes

Program Settings