Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR102G3009 Punica granatum HOM05D004641 ORTHO05D005871 1.8e-159 565.8 288 100.0
Eucgr.B03435 Eucalyptus grandis HOM05D004641 ORTHO05D005871 3.7e-128 461.8 288 79.5
Cpa.g.sc128.14 Carica papaya HOM05D004641 ORTHO05D005871 9.5e-124 447.2 288 77.1
CSS0000565 Camellia sinensis var. sinensis HOM05D004641 ORTHO05D005871 2.1e-123 446.0 286 75.2
CSS0029182 Camellia sinensis var. sinensis HOM05D004641 ORTHO05D005871 3.6e-123 445.3 286 74.8
TWI12G0809 Tripterygium wilfordii HOM05D004641 ORTHO05D005871 3.7e-120 435.3 285 75.8
CiPaw.05G136500 Carya illinoinensis HOM05D004641 ORTHO05D005871 1.1e-119 433.7 286 76.2
Potri.011G083700 Populus trichocarpa HOM05D004641 ORTHO05D005871 1.1e-119 433.7 286 76.6
QL03p064370 Quercus lobata HOM05D004641 ORTHO05D005871 1.1e-119 433.7 286 76.9
Actinidia04038 Actinidia chinensis HOM05D004641 ORTHO05D005871 2.4e-119 432.6 288 73.3
Prupe.1G273100 Prunus persica HOM05D004641 ORTHO05D005871 1.6e-118 429.9 288 72.9
COL.COLO4_22996 Corchorus olitorius HOM05D004641 ORTHO05D005871 2.1e-118 429.5 289 75.4
Duzib268G0036 Durio zibethinus HOM05D004641 ORTHO05D005871 2.1e-118 429.5 289 75.8
Gorai.013G084700 Gossypium raimondii HOM05D004641 ORTHO05D005871 2.7e-118 429.1 289 75.1
Gohir.A13G074000 Gossypium hirsutum HOM05D004641 ORTHO05D005871 1.3e-117 426.8 289 74.7
Lj3A1038G72 Lonicera japonica HOM05D004641 ORTHO05D005871 1.3e-117 426.8 282 74.8
Cc11_g13100 Coffea canephora HOM05D004641 ORTHO05D005871 3.0e-117 425.6 288 73.3
CANSAT64G1560 Cannabis sativa HOM05D004641 ORTHO05D005871 3.9e-117 425.2 290 73.8
Gohir.D13G074100 Gossypium hirsutum HOM05D004641 ORTHO05D005871 8.6e-117 424.1 289 74.4
VMungo1215G3365 Vigna mungo HOM05D004641 ORTHO05D005871 8.6e-117 424.1 286 73.8
GSVIVG01020002001 Vitis vinifera HOM05D004641 ORTHO05D005871 8.6e-117 424.1 287 72.8
Glyma.02G106600 Glycine max HOM05D004641 ORTHO05D005871 1.5e-116 423.3 286 74.8
Phvul.002G086150 Phaseolus vulgaris HOM05D004641 ORTHO05D005871 9.6e-116 420.6 286 72.4
Ciclev10032310m.g Citrus clementina HOM05D004641 ORTHO05D005871 1.6e-115 419.9 288 73.6
Nitab4.5_0000703g0120 Nicotiana tabacum HOM05D004641 ORTHO05D005871 2.1e-115 419.5 288 72.6
RcHm_v2.0_Chr4g0439951 Rosa chinensis HOM05D004641 ORTHO05D005871 4.7e-115 418.3 288 74.3
Peaxi162Scf00541g00527 Petunia axillaris HOM05D004641 ORTHO05D005871 6.2e-115 417.9 282 73.8
Glyma.01G046400 Glycine max HOM05D004641 ORTHO05D005871 2.4e-114 416.0 286 73.8
FvH4_4g31460 Fragaria vesca HOM05D004641 ORTHO05D005871 4.0e-114 415.2 289 72.7
THA.LOC104822117 Tarenaya hassleriana HOM05D004641 ORTHO05D005871 4.0e-114 415.2 288 71.5
FAN22G2174 Fragaria x ananassa HOM05D004641 ORTHO05D005871 8.9e-114 414.1 289 72.7
Oeu001572.1 Olea europaea HOM05D004641 ORTHO05D005871 8.9e-114 414.1 288 70.5
Medtr7g039370 Medicago truncatula HOM05D004641 ORTHO05D005871 1.5e-113 413.3 286 73.8
Medtr5g040250 Medicago truncatula HOM05D004641 ORTHO05D005871 2.0e-113 412.9 286 73.8
Psat2g121160 Pisum sativum HOM05D004641 ORTHO05D005871 2.6e-113 412.5 285 73.0
Ca_24263_v3 Cicer arietinum L. HOM05D004641 ORTHO05D005871 4.4e-113 411.8 286 72.7
PGSC0003DMG400003384 Solanum tuberosum HOM05D004641 ORTHO05D005871 1.3e-112 410.2 288 71.9
MBI05_g35443_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 1.7e-112 409.8 293 72.0
Solyc05g007450.3 Solanum lycopersicum HOM05D004641 ORTHO05D005871 2.9e-112 409.1 288 71.5
HanXRQChr12g0362561 Helianthus annuus HOM05D004641 ORTHO05D005871 3.8e-112 408.7 282 72.3
Lalb_Chr10g0098211 Lupinus albus HOM05D004641 ORTHO05D005871 4.9e-112 408.3 286 73.8
Lj2g0007835 Lotus japonicus HOM05D004641 ORTHO05D005871 6.4e-112 407.9 290 71.7
Sopen05g003330 Solanum pennellii HOM05D004641 ORTHO05D005871 6.4e-112 407.9 288 71.9
HanXRQChr08g0210501 Helianthus annuus HOM05D004641 ORTHO05D005871 8.4e-112 407.5 282 72.7
TAR629G2466 Trochodendron aralioides HOM05D004641 ORTHO05D005871 8.4e-112 407.5 287 72.8
AUR62005767 Chenopodium quinoa HOM05D004641 ORTHO05D005871 3.2e-111 405.6 289 70.9
Sabra11G0066400 Salix brachista HOM05D004641 ORTHO05D005871 5.4e-111 404.8 285 73.0
AUR62028790 Chenopodium quinoa HOM05D004641 ORTHO05D005871 6.0e-110 401.4 289 70.2
ECA233G1872 Erigeron canadensis HOM05D004641 ORTHO05D005871 2.3e-109 399.4 282 70.2
MSTRG.7808 Avicennia marina HOM05D004641 ORTHO05D005871 3.9e-109 398.7 281 70.1
FAN17G1817 Fragaria x ananassa HOM05D004641 ORTHO05D005871 5.1e-109 398.3 299 69.2
DCAR_007149 Daucus carota HOM05D004641 ORTHO05D005871 6.6e-109 397.9 284 69.4
Hund25250 Selenicereus undatus HOM05D004641 ORTHO05D005871 1.1e-108 397.1 289 69.6
Aa31LG7G8260 Aethionema arabicum HOM05D004641 ORTHO05D005871 1.9e-108 396.4 287 70.7
Haze_12020 Corylus avellana HOM05D004641 ORTHO05D005871 5.6e-108 394.8 286 70.3
MD13G1073100 Malus domestica HOM05D004641 ORTHO05D005871 5.6e-108 394.8 259 74.9
TAR622G0412 Trochodendron aralioides HOM05D004641 ORTHO05D005871 1.6e-107 393.3 292 69.5
Migut.L01304 Erythranthe guttata HOM05D004641 ORTHO05D005871 4.8e-107 391.7 280 69.3
SalBow2G2171 Salvia bowleyana HOM05D004641 ORTHO05D005871 6.2e-107 391.3 282 67.7
CiPaw.06G083900 Carya illinoinensis HOM05D004641 ORTHO05D005871 3.1e-106 389.0 244 80.3
ClCG11G009310 Citrullus lanatus HOM05D004641 ORTHO05D005871 3.1e-106 389.0 282 68.8
Sc11g0001860 Simmondsia chinensis HOM05D004641 ORTHO05D005871 4.0e-106 388.7 289 69.2
Manes.01G186500 Manihot esculenta HOM05D004641 ORTHO05D005871 9.0e-106 387.5 230 83.0
CAN.G58.35 Capsicum annuum HOM05D004641 ORTHO05D005871 2.0e-105 386.3 288 68.4
FAN07G1510 Fragaria x ananassa HOM05D004641 ORTHO05D005871 2.6e-105 386.0 272 72.1
CARHR025060 Cardamine hirsuta HOM05D004641 ORTHO05D005871 9.9e-105 384.0 282 70.2
Nn3g17219 Nelumbo nucifera HOM05D004641 ORTHO05D005871 9.9e-105 384.0 295 67.1
BcaC05g26381 Brassica carinata HOM05D004641 ORTHO05D005871 3.8e-104 382.1 285 69.1
C05p24110 Brassica napus HOM05D004641 ORTHO05D005871 3.8e-104 382.1 285 69.1
BolC5t31146H Brassica oleracea HOM05D004641 ORTHO05D005871 3.8e-104 382.1 285 69.1
AL1G38720 Arabidopsis lyrata HOM05D004641 ORTHO05D005871 4.9e-104 381.7 285 69.5
FAN12G2116 Fragaria x ananassa HOM05D001668 ORTHO05D005871 4.9e-104 381.7 272 71.0
EL10Ac6g13193 Beta vulgaris HOM05D004641 ORTHO05D005871 6.4e-104 381.3 323 62.8
Aqoxy3G03361 Aquilegia oxysepala HOM05D004641 ORTHO05D005871 1.1e-103 380.6 294 67.3
A09p40260 Brassica napus HOM05D004641 ORTHO05D005871 3.2e-103 379.0 282 69.1
BraA09t39524Z Brassica rapa HOM05D004641 ORTHO05D005871 5.4e-103 378.3 282 68.8
Thecc.02G351000 Theobroma cacao HOM05D004641 ORTHO05D005871 9.3e-103 377.5 230 81.3
Carub.0001s2410 Capsella rubella HOM05D004641 ORTHO05D005871 1.6e-102 376.7 277 70.8
vmacro04307 Vaccinium macrocarpon HOM05D004641 ORTHO05D005871 1.6e-102 376.7 229 78.2
BcaC07g39267 Brassica carinata HOM05D004641 ORTHO05D005871 2.1e-102 376.3 285 68.8
C08p22760 Brassica napus HOM05D004641 ORTHO05D005871 2.1e-102 376.3 285 68.8
BolC8t49912H Brassica oleracea HOM05D004641 ORTHO05D005871 2.1e-102 376.3 285 68.8
AT1G26840 Arabidopsis thaliana HOM05D004641 ORTHO05D005871 4.6e-102 375.2 282 67.7
arahy.Tifrunner.gnm1.ann1.K7EFN7 Arachis hypogaea HOM05D004641 ORTHO05D005871 1.3e-101 373.6 294 66.3
Thhalv10008398m.g Eutrema salsugineum HOM05D004641 ORTHO05D005871 1.7e-101 373.2 283 67.8
Sp1g21940 Schrenkiella parvula HOM05D004641 ORTHO05D005871 1.7e-101 373.2 282 68.1
Ah.03g135170 Amaranthus hybridus HOM05D004641 ORTHO05D005871 3.9e-101 372.1 289 67.1
PSO478G0089 Papaver somniferum HOM05D004641 ORTHO05D005871 3.9e-101 372.1 291 64.3
Nitab4.5_0012364g0020 Nicotiana tabacum HOM05D004641 ORTHO05D005871 5.1e-101 371.7 288 66.0
Rhsim07G0243500 Rhododendron simsii HOM05D004641 ORTHO05D005871 6.6e-101 371.3 237 75.1
BraA08t34696Z Brassica rapa HOM05D004641 ORTHO05D005871 1.1e-100 370.5 282 68.1
CsaV3_2G010800 Cucumis sativus L. HOM05D004641 ORTHO05D005871 1.5e-100 370.2 283 66.1
PSO017G4882 Papaver somniferum HOM05D004641 ORTHO05D005871 1.9e-100 369.8 291 64.6
A08p27580 Brassica napus HOM05D004641 ORTHO05D005871 5.6e-100 368.2 285 67.4
Aqoxy5G03781 Aquilegia oxysepala HOM05D004641 ORTHO05D005871 3.6e-99 365.5 294 65.3
BcaB03g12011 Brassica carinata HOM05D004641 ORTHO05D005871 6.2e-99 364.8 282 66.7
SGA_v2.0_scaffold302G47825 Striga asiatica HOM05D004641 ORTHO05D005871 1.4e-98 363.6 290 65.9
Zm00001eb328260 Zea mays HOM05D004641 ORTHO05D005871 1.4e-98 363.6 287 64.1
HPP92_016908 Vanilla planifolia HOM05D004641 ORTHO05D005871 2.0e-97 359.8 289 64.4
Atru.chr11.1801 Acer truncatum HOM05D004641 ORTHO05D005871 5.8e-97 358.2 217 80.2
arahy.Tifrunner.gnm1.ann1.ITG5Q4 Arachis hypogaea HOM05D004641 ORTHO05D005871 5.8e-97 358.2 295 64.1
MELO3C008530.2 Cucumis melo HOM05D004641 ORTHO05D005871 2.9e-96 355.9 261 68.6
Os07g0628600 Oryza sativa ssp. japonica HOM05D004641 ORTHO05D005871 2.9e-96 355.9 290 63.4
SGA_v2.0_scaffold53G19380 Striga asiatica HOM05D004641 ORTHO05D005871 3.2e-95 352.4 290 64.5
Lalb_Chr17g0340601 Lupinus albus HOM05D004641 ORTHO05D005871 4.2e-95 352.1 245 73.9
MD16G1074100 Malus domestica HOM05D004641 ORTHO05D005871 2.7e-94 349.4 277 64.6
Lsat_1_v5_gn_8_52860 Lactuca sativa HOM05D004641 ORTHO05D005871 3.9e-93 345.5 282 63.5
Sp5g24800 Schrenkiella parvula HOM05D004641 ORTHO05D005871 1.9e-92 343.2 252 69.4
CDE04G3358 Ceratophyllum demersum HOM05D004641 ORTHO05D005871 8.1e-91 337.8 297 60.6
Sed0021592 Sechium edule HOM05D004641 ORTHO05D005871 2.4e-90 336.3 283 62.9
ATR0800G170 Amborella trichopoda HOM05D004641 ORTHO05D005871 1.5e-89 333.6 230 71.3
Psat0s2466g0040 Pisum sativum HOM05D004641 ORTHO05D005871 4.5e-89 332.0 242 70.2
Dinv16637 Davidia involucrata HOM05D004641 ORTHO05D005871 4.9e-88 328.6 218 74.3
Sed0002473 Sechium edule HOM05D004641 ORTHO05D005871 1.6e-86 323.6 239 67.4
CARHR062650 Cardamine hirsuta HOM05D004641 ORTHO05D005871 1.3e-83 313.9 245 65.3
Oeu054890.1 Olea europaea HOM05D004641 ORTHO05D005871 5.3e-82 308.5 229 67.7
Oeu054889.1 Olea europaea HOM05D004641 ORTHO05D005871 2.0e-81 306.6 229 67.7
SEGI_09090 Sequoiadendron giganteum HOM05D004641 ORTHO05D005871 5.0e-80 302.0 230 64.8
SHI55061 Sapria himalayana HOM05D004641 ORTHO05D005871 2.5e-76 289.7 235 61.7
AagrBONN_evm.TU.Sc2ySwM_228.4149 Anthoceros agrestis HOM05D004641 ORTHO05D005871 9.0e-74 281.2 292 49.0
Pp3c13_2030 Physcomitrium patens HOM05D004641 ORTHO05D005871 3.3e-68 262.7 289 45.7
MBI09_g01021_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 1.2e-65 254.2 218 63.8
Mapoly0064s0110 Marchantia polymorpha HOM05D004641 ORTHO05D005871 5.9e-65 251.9 272 49.3
unitig_22.g6910 Utricularia gibba HOM05D004641 ORTHO05D005871 5.7e-60 235.3 268 52.2
SMO114G0050 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 4.8e-59 232.3 197 53.3
SMO117G0352 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 1.8e-58 230.3 197 53.3
Gohir.A01G134350 Gossypium hirsutum HOM05D004641 ORTHO05D005871 3.1e-58 229.6 153 71.9
SMO254G0007 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 5.3e-58 228.8 197 52.3
SMO254G0005 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 1.2e-57 227.6 197 52.3
Gohir.A07G052500 Gossypium hirsutum HOM05D004641 ORTHO05D005871 1.6e-57 227.3 136 78.7
MBI02_g14195_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 1.6e-57 227.3 219 58.9
MBI05_g01300_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 8.5e-56 221.5 232 55.2
CDE08G0800 Ceratophyllum demersum HOM05D004641 ORTHO05D005871 1.2e-52 211.1 265 48.7
Gohir.A08G223448 Gossypium hirsutum HOM05D004641 ORTHO05D005871 8.2e-51 204.9 135 74.1
SMO254G0008 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 2.5e-47 193.4 197 47.2
MBI10_g44256_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 1.4e-45 187.6 171 58.5
CBR_g31088 Chara braunii HOM05D000019 ORTHO05D000048 5.2e-37 159.1 185 46.5
Thecc.03G087000 Theobroma cacao HOM05D004641 ORTHO05D005871 1.6e-33 147.5 119 66.4
SMO254G0011 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 1.6e-30 137.5 180 40.6
MBI10_g47167_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 6.1e-30 135.6 192 47.4
MD16G1073900 Malus domestica HOM05D004641 ORTHO05D005871 6.1e-30 135.6 83 78.3
MBI10_g06043_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 3.0e-29 133.3 206 43.2
Cre06.g285650 Chlamydomonas reinhardtii HOM05D004641 ORTHO05D005871 2.0e-28 130.6 193 40.9
SMO254G0019 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 2.0e-28 130.6 197 37.6
C05p19510 Brassica napus HOM05D004641 ORTHO05D005871 9.8e-28 128.3 104 64.4
BolC5t30653H Brassica oleracea HOM05D004641 ORTHO05D005871 9.8e-28 128.3 104 64.4
TPR.G37129 Trifolium pratense HOM05D004641 ORTHO05D005871 2.2e-27 127.1 76 80.3
PRCOL_00006308 Prasinoderma coloniale HOM05D004641 ORTHO05D005871 7.8e-25 118.6 218 33.0
MBI13_g45115_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 5.4e-18 95.9 59 71.2
MBI14_g27757_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 2.0e-17 94.0 57 70.2
MBI18_g33078_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 2.0e-17 94.0 57 70.2
CBR_g31090 Chara braunii HOM05D004641 ORTHO05D005871 1.7e-16 90.9 90 47.8
MBI11_g16036_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 1.7e-16 90.9 57 68.4
MBI16_g45579_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 1.6e-14 84.3 78 55.1
MBI13_g16082_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 5.2e-13 79.3 53 66.0
A10p02040 Brassica napus HOM05D000207 ORTHO05D013918 6.8e-13 79.0 51 68.6
A02p16560 Brassica napus HOM05D004641 ORTHO05D005871 1.3e-08 64.7 92 42.4
EL10Ac2g04116 Beta vulgaris HOM05D004641 ORTHO05D005871 3.6e-06 56.6 46 63.0
A09p47150 Brassica napus HOM05D004641 ORTHO05D022007 3.6e-06 56.6 60 53.3
BraA09t40177Z Brassica rapa HOM05D004641 ORTHO05D022007 3.6e-06 56.6 60 53.3
A09p29530 Brassica napus HOM05D004641 ORTHO05D022007 8.1e-06 55.5 61 50.8


User provided reference genes

Program Settings