Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR102G2973 Punica granatum HOM05D004453 ORTHO05D005375 1.8e-134 482.6 252 100.0
Dinv03791 Davidia involucrata HOM05D004453 ORTHO05D005375 2.5e-80 302.8 237 67.9
Cfa009532 Carpinus fangiana HOM05D004453 ORTHO05D005375 5.7e-80 301.6 238 69.3
Manes.16G034900 Manihot esculenta HOM05D004453 ORTHO05D005375 3.7e-79 298.9 239 66.9
THA.LOC104815673 Tarenaya hassleriana HOM05D004453 ORTHO05D005375 1.1e-78 297.4 240 66.2
CARHR045220 Cardamine hirsuta HOM05D004453 ORTHO05D005375 3.1e-78 295.8 243 65.0
TWI34G0101 Tripterygium wilfordii HOM05D004453 ORTHO05D005375 3.1e-78 295.8 243 66.3
TWI60G0130 Tripterygium wilfordii HOM05D004453 ORTHO05D005375 4.1e-78 295.4 236 67.4
Manes.17G052200 Manihot esculenta HOM05D004453 ORTHO05D005375 1.5e-77 293.5 239 66.9
Cpa.g.sc119.21 Carica papaya HOM05D004453 ORTHO05D005375 2.0e-77 293.1 210 73.8
PGR119G0742 Punica granatum HOM05D004453 ORTHO05D005375 4.5e-77 292.0 238 68.9
Prupe.6G001400 Prunus persica HOM05D004453 ORTHO05D005375 5.9e-77 291.6 236 67.8
Thhalv10011735m.g Eutrema salsugineum HOM05D004453 ORTHO05D005375 7.7e-77 291.2 246 65.4
Carub.0001s4404 Capsella rubella HOM05D004453 ORTHO05D005375 1.3e-76 290.4 249 63.9
Dinv13490 Davidia involucrata HOM05D004453 ORTHO05D005375 1.3e-76 290.4 243 65.0
AT1G55535 Arabidopsis thaliana HOM05D004453 ORTHO05D005375 2.9e-76 289.3 246 64.2
MD11G1001200 Malus domestica HOM05D004453 ORTHO05D005375 5.0e-76 288.5 239 66.9
QL01p007925 Quercus lobata HOM05D004453 ORTHO05D005375 5.0e-76 288.5 237 65.0
AL1G63560 Arabidopsis lyrata HOM05D004453 ORTHO05D005375 1.1e-75 287.3 243 63.8
BcaC08g44204 Brassica carinata HOM05D004453 ORTHO05D005375 1.1e-75 287.3 248 63.7
BolC6t36812H Brassica oleracea HOM05D004453 ORTHO05D005375 1.1e-75 287.3 248 63.7
Sp1g41150 Schrenkiella parvula HOM05D004453 ORTHO05D005375 1.9e-75 286.6 246 63.8
RcHm_v2.0_Chr5g0084051 Rosa chinensis HOM05D004453 ORTHO05D005375 3.2e-75 285.8 244 64.8
FAN25G0403 Fragaria x ananassa HOM05D004453 ORTHO05D005375 4.2e-75 285.4 242 65.7
MD03G1001500 Malus domestica HOM05D004453 ORTHO05D005375 4.2e-75 285.4 241 66.4
FvH4_3g45940 Fragaria vesca HOM05D004453 ORTHO05D005375 5.5e-75 285.0 238 66.0
FAN11G3564 Fragaria x ananassa HOM05D004453 ORTHO05D005375 5.5e-75 285.0 238 66.0
FAN21G0323 Fragaria x ananassa HOM05D004453 ORTHO05D005375 5.5e-75 285.0 238 66.0
FAN16G2113 Fragaria x ananassa HOM05D004453 ORTHO05D005375 9.4e-75 284.3 238 66.0
GSVIVG01025506001 Vitis vinifera HOM05D004453 ORTHO05D005375 1.2e-74 283.9 239 64.4
Ca_18793_v3 Cicer arietinum L. HOM05D004453 ORTHO05D005375 1.6e-74 283.5 234 66.7
Eucgr.J01746 Eucalyptus grandis HOM05D004453 ORTHO05D005375 7.9e-74 281.2 249 62.2
Lj4g0023466 Lotus japonicus HOM05D004453 ORTHO05D005375 1.0e-73 280.8 235 66.4
BcaB02g10815 Brassica carinata HOM05D004453 ORTHO05D005375 1.8e-73 280.0 249 62.7
Lalb_Chr16g0385441 Lupinus albus HOM05D004453 ORTHO05D005375 3.0e-73 279.3 238 67.6
Actinidia16228 Actinidia chinensis HOM05D004453 ORTHO05D005375 3.9e-73 278.9 242 61.6
Eucgr.B03584 Eucalyptus grandis HOM05D004453 ORTHO05D005375 3.9e-73 278.9 195 73.3
TPR.G34071 Trifolium pratense HOM05D004453 ORTHO05D005375 3.9e-73 278.9 241 65.6
Atru.chr4.902 Acer truncatum HOM05D004453 ORTHO05D005375 6.7e-73 278.1 230 66.1
Thecc.09G205600 Theobroma cacao HOM05D004453 ORTHO05D005375 6.7e-73 278.1 242 68.2
CsaV3_4G017680 Cucumis sativus L. HOM05D004453 ORTHO05D005375 1.5e-72 276.9 237 64.6
ClCG02G024480 Citrullus lanatus HOM05D004453 ORTHO05D005375 5.7e-72 275.0 200 70.5
Sed0012812 Sechium edule HOM05D004453 ORTHO05D005375 5.7e-72 275.0 238 63.0
Ciclev10016282m.g Citrus clementina HOM05D004453 ORTHO05D005375 1.7e-71 273.5 262 61.8
C06p16140 Brassica napus HOM05D004453 ORTHO05D005375 2.2e-71 273.1 248 62.1
TAR623G1190 Trochodendron aralioides HOM05D004453 ORTHO05D005375 2.2e-71 273.1 233 64.8
A08p00560 Brassica napus HOM05D004453 ORTHO05D005375 2.8e-71 272.7 249 63.1
Glyma.20G024900 Glycine max HOM05D004453 ORTHO05D005375 2.8e-71 272.7 236 64.8
Psat7g133480 Pisum sativum HOM05D004453 ORTHO05D005375 3.7e-71 272.3 243 64.6
BcaC01g01533 Brassica carinata HOM05D004453 ORTHO05D005375 6.3e-71 271.6 249 61.4
A05p17380 Brassica napus HOM05D004453 ORTHO05D005375 6.3e-71 271.6 249 61.8
Medtr4g083300 Medicago truncatula HOM05D004453 ORTHO05D005375 6.3e-71 271.6 229 66.4
Rhsim01G0183700 Rhododendron simsii HOM05D004453 ORTHO05D005375 6.3e-71 271.6 243 61.7
Cc01_g00270 Coffea canephora HOM05D004453 ORTHO05D005375 8.2e-71 271.2 245 61.2
BraA08t32115Z Brassica rapa HOM05D004453 ORTHO05D005375 1.1e-70 270.8 249 62.7
CSS0040072 Camellia sinensis var. sinensis HOM05D004453 ORTHO05D005375 1.1e-70 270.8 244 61.5
Nn7g35809 Nelumbo nucifera HOM05D004453 ORTHO05D005375 3.1e-70 269.2 249 59.8
AUR62042621 Chenopodium quinoa HOM05D004453 ORTHO05D005375 4.1e-70 268.9 234 62.0
Glyma.07G225000 Glycine max HOM05D004453 ORTHO05D005375 4.1e-70 268.9 236 64.0
Nn2g15897 Nelumbo nucifera HOM05D004453 ORTHO05D005375 4.1e-70 268.9 244 61.9
AUR62040892 Chenopodium quinoa HOM05D001653 ORTHO05D001751 6.9e-70 268.1 234 62.0
Aqoxy1G00087 Aquilegia oxysepala HOM05D004453 ORTHO05D005375 1.2e-69 267.3 238 61.3
C03p92850 Brassica napus HOM05D004453 ORTHO05D005375 1.5e-69 266.9 257 59.5
BolC3t21591H Brassica oleracea HOM05D004453 ORTHO05D005375 1.5e-69 266.9 257 59.5
Phvul.002G101400 Phaseolus vulgaris HOM05D004453 ORTHO05D005375 2.0e-69 266.5 236 64.0
Oeu023964.1 Olea europaea HOM05D004453 ORTHO05D005375 7.7e-69 264.6 244 59.8
MELO3C031044.2 Cucumis melo HOM05D004453 ORTHO05D005375 2.2e-68 263.1 221 65.2
Peaxi162Scf00186g01212 Petunia axillaris HOM05D004453 ORTHO05D005375 3.8e-68 262.3 236 62.7
Ah.04g153920 Amaranthus hybridus HOM05D004453 ORTHO05D005375 6.5e-68 261.5 234 62.0
vmacro12597 Vaccinium macrocarpon HOM05D004453 ORTHO05D005375 8.5e-68 261.2 204 67.2
arahy.Tifrunner.gnm1.ann1.GHD6QC Arachis hypogaea HOM05D004453 ORTHO05D005375 1.1e-67 260.8 242 61.2
PSO339G2035 Papaver somniferum HOM05D004453 ORTHO05D005375 1.1e-67 260.8 239 59.8
arahy.Tifrunner.gnm1.ann1.C35Y2E Arachis hypogaea HOM05D004453 ORTHO05D005375 1.9e-67 260.0 242 61.2
DCAR_023824 Daucus carota HOM05D004453 ORTHO05D005375 1.9e-67 260.0 186 71.5
MBI19_g09317_MAGBIO Magnolia biondii HOM05D004453 ORTHO05D005375 1.9e-67 260.0 231 61.9
Sabra01G0001000 Salix brachista HOM05D004453 ORTHO05D005375 1.9e-67 260.0 249 57.4
Haze_22921 Corylus avellana HOM05D004453 ORTHO05D005375 3.2e-67 259.2 202 69.8
PSO384G0395 Papaver somniferum HOM05D004453 ORTHO05D005375 4.2e-67 258.8 237 59.5
COL.COLO4_35070 Corchorus olitorius HOM05D004453 ORTHO05D005375 1.2e-66 257.3 237 65.4
TAR369G0719 Trochodendron aralioides HOM05D004453 ORTHO05D005375 2.7e-66 256.1 241 61.4
Potri.001G001400 Populus trichocarpa HOM05D004453 ORTHO05D005375 6.1e-66 255.0 188 69.7
CiPaw.13G179200 Carya illinoinensis HOM05D004453 ORTHO05D005375 7.9e-66 254.6 238 62.6
Duzib150G1073 Durio zibethinus HOM05D004453 ORTHO05D005375 1.0e-65 254.2 245 63.7
Sc13g0003960 Simmondsia chinensis HOM05D004453 ORTHO05D005375 1.4e-65 253.8 205 66.8
Solyc01g050070.4 Solanum lycopersicum HOM05D004453 ORTHO05D005375 1.4e-65 253.8 220 64.1
QL01p007909 Quercus lobata HOM05D004453 ORTHO05D005375 3.0e-65 252.7 185 71.9
Sopen01g019490 Solanum pennellii HOM05D004453 ORTHO05D005375 3.0e-65 252.7 220 63.6
VMungo0251G3504 Vigna mungo HOM05D004453 ORTHO05D005375 6.7e-65 251.5 201 67.2
EL10Ac7g17533 Beta vulgaris HOM05D004453 ORTHO05D005375 1.1e-64 250.8 243 59.7
Lalb_Chr05g0219881 Lupinus albus HOM05D004453 ORTHO05D005375 7.4e-64 248.1 193 70.5
ECA238G2653 Erigeron canadensis HOM05D004453 ORTHO05D005375 1.7e-63 246.9 235 59.1
ATR0068G064 Amborella trichopoda HOM05D004453 ORTHO05D005375 4.8e-63 245.4 227 58.1
Aa31LG10G710 Aethionema arabicum HOM05D004453 ORTHO05D005375 8.2e-63 244.6 239 59.4
Gohir.D03G147000 Gossypium hirsutum HOM05D004453 ORTHO05D005375 8.2e-63 244.6 201 67.7
Gohir.D08G020800 Gossypium hirsutum HOM05D004453 ORTHO05D005375 1.4e-62 243.8 248 60.5
Gohir.A03G021700 Gossypium hirsutum HOM05D004453 ORTHO05D005375 3.1e-62 242.7 201 67.7
HanXRQChr14g0437111 Helianthus annuus HOM05D004453 ORTHO05D005375 7.0e-62 241.5 241 55.6
Gorai.003G154400 Gossypium raimondii HOM05D004453 ORTHO05D005375 9.1e-62 241.1 201 66.7
Gohir.A08G014200 Gossypium hirsutum HOM05D004453 ORTHO05D005375 1.2e-61 240.7 237 62.0
Gorai.004G020100 Gossypium raimondii HOM05D004453 ORTHO05D005375 1.5e-61 240.4 237 61.6
Hund01806 Selenicereus undatus HOM05D000185 ORTHO05D000105 1.5e-61 240.4 272 55.5
Migut.N00531 Erythranthe guttata HOM05D004453 ORTHO05D005375 7.7e-61 238.0 233 57.5
CDE04G0921 Ceratophyllum demersum HOM05D004453 ORTHO05D005375 1.3e-60 237.3 235 55.7
CDE02G3000 Ceratophyllum demersum HOM05D004453 ORTHO05D005375 2.9e-60 236.1 247 52.6
HPP92_000788 Vanilla planifolia HOM05D004453 ORTHO05D005375 9.4e-59 231.1 226 54.0
HPP92_026813 Vanilla planifolia HOM05D004453 ORTHO05D005375 2.1e-58 229.9 226 54.0
Zm00001eb303530 Zea mays HOM05D004453 ORTHO05D005375 1.0e-57 227.6 235 55.3
Os07g0223700 Oryza sativa ssp. japonica HOM05D004453 ORTHO05D005375 1.4e-57 227.3 229 56.8
ECA248G0105 Erigeron canadensis HOM05D004453 ORTHO05D005375 1.1e-56 224.2 223 57.8
AL3G25290 Arabidopsis lyrata HOM05D004453 ORTHO05D005375 2.0e-56 223.4 262 54.2
SGA_v2.0_scaffold6G03329 Striga asiatica HOM05D004453 ORTHO05D005375 2.6e-56 223.0 242 53.3
CARHR088030 Cardamine hirsuta HOM05D004453 ORTHO05D005375 5.7e-56 221.9 258 56.2
Lsat_1_v5_gn_2_50660 Lactuca sativa HOM05D004453 ORTHO05D005375 3.7e-55 219.2 236 54.2
PSO675G3694 Papaver somniferum HOM05D004453 ORTHO05D005375 6.3e-55 218.4 213 57.3
Carub.0003s1279 Capsella rubella HOM05D004453 ORTHO05D005375 1.4e-54 217.2 262 52.3
PSO541G5087 Papaver somniferum HOM05D004453 ORTHO05D005375 1.4e-54 217.2 213 56.8
Sp3g11610 Schrenkiella parvula HOM05D004453 ORTHO05D005375 1.4e-54 217.2 262 53.8
AT3G13420 Arabidopsis thaliana HOM05D004453 ORTHO05D005375 1.6e-53 213.8 172 68.0
A05p36110 Brassica napus HOM05D004453 ORTHO05D005375 1.6e-53 213.8 162 69.1
C05p54480 Brassica napus HOM05D004453 ORTHO05D005375 1.6e-53 213.8 162 69.1
BolC5t34115H Brassica oleracea HOM05D004453 ORTHO05D005375 1.6e-53 213.8 162 69.1
Thhalv10021458m.g Eutrema salsugineum HOM05D004453 ORTHO05D005375 1.6e-53 213.8 228 53.9
MSTRG.18889 Avicennia marina HOM05D004453 ORTHO05D005375 4.5e-53 212.2 233 54.9
Lsat_1_v5_gn_1_71301 Lactuca sativa HOM05D004453 ORTHO05D005375 4.5e-53 212.2 245 53.5
Potri.003G223300 Populus trichocarpa HOM05D004453 ORTHO05D005375 5.9e-53 211.8 227 53.7
SEGI_24089 Sequoiadendron giganteum HOM05D004453 ORTHO05D005375 5.9e-53 211.8 214 55.1
Aa31LG8G630 Aethionema arabicum HOM05D004453 ORTHO05D005375 1.7e-52 210.3 194 58.8
SGA_v2.0_scaffold3G01700 Striga asiatica HOM05D004453 ORTHO05D005375 2.1e-50 203.4 185 58.4
BcaC05g29180 Brassica carinata HOM05D004453 ORTHO05D005375 1.8e-49 200.3 148 71.6
Nitab4.5_0002355g0020 Nicotiana tabacum HOM05D004453 ORTHO05D005375 7.5e-48 194.9 195 56.4
SHI06880 Sapria himalayana HOM05D004453 ORTHO05D005375 1.8e-46 190.3 165 64.2
SHI31305 Sapria himalayana HOM05D004453 ORTHO05D005375 1.6e-45 187.2 194 55.2
SMO203G0107 Selaginella moellendorffii HOM05D004453 ORTHO05D005375 2.5e-43 179.9 185 52.4
Nitab4.5_0000075g0210 Nicotiana tabacum HOM05D004453 ORTHO05D005375 4.2e-43 179.1 236 46.6
BraA05t20635Z Brassica rapa HOM05D004453 ORTHO05D005375 5.5e-43 178.7 128 71.9
SMO271G0148 Selaginella moellendorffii HOM05D004453 ORTHO05D005375 1.2e-42 177.6 183 55.2
AagrBONN_evm.TU.Sc2ySwM_228.4359 Anthoceros agrestis HOM05D004453 ORTHO05D005375 2.7e-42 176.4 196 51.0
Mapoly0036s0042 Marchantia polymorpha HOM05D004453 ORTHO05D005375 2.8e-39 166.4 185 49.2
SalBow3G0087 Salvia bowleyana HOM05D004453 ORTHO05D005375 3.7e-39 166.0 167 52.7
unitig_62.g23532 Utricularia gibba HOM05D004453 ORTHO05D005375 4.8e-39 165.6 182 48.9
unitig_52.g17526 Utricularia gibba HOM05D004453 ORTHO05D005375 5.4e-38 162.2 218 44.5
CARHR152870 Cardamine hirsuta HOM05D004453 ORTHO05D005375 6.6e-36 155.2 115 72.2
Pp3c14_21170 Physcomitrium patens HOM05D004453 ORTHO05D005375 8.6e-36 154.8 185 49.2
Pp3c2_4610 Physcomitrium patens HOM05D004453 ORTHO05D005375 2.8e-34 149.8 198 46.5
Pp3c1_38420 Physcomitrium patens HOM05D004453 ORTHO05D005375 3.6e-34 149.4 186 48.4
Lj1C553T1 Lonicera japonica HOM05D004453 ORTHO05D005375 2.4e-30 136.7 99 70.7
Actinidia30440 Actinidia chinensis HOM05D004453 ORTHO05D005375 4.5e-29 132.5 96 76.0
SMO353G0048 Selaginella moellendorffii HOM05D004453 ORTHO05D005375 2.5e-27 126.7 199 39.2
Lj1C553T2 Lonicera japonica HOM05D004453 ORTHO05D005375 3.3e-27 126.3 97 63.9
HPP92_019023 Vanilla planifolia HOM05D004453 ORTHO05D005375 3.7e-23 112.8 94 58.5
Oeu060910.1 Olea europaea HOM05D004453 ORTHO05D005375 5.0e-20 102.4 114 51.8
BcaB01g02219 Brassica carinata HOM05D004453 ORTHO05D005375 7.5e-16 88.6 97 47.4
Zm00001eb095200 Zea mays HOM05D004453 ORTHO05D005375 2.2e-15 87.0 110 47.3
Psat5g028080 Pisum sativum HOM05D004453 ORTHO05D005375 5.1e-12 75.9 115 42.6
Psat5g028160 Pisum sativum HOM05D004453 ORTHO05D005375 8.6e-12 75.1 95 46.3
SMO308G0081 Selaginella moellendorffii HOM05D004453 ORTHO05D005375 3.3e-11 73.2 144 40.3
CBR_g35002 Chara braunii HOM05D000321 ORTHO05D000204 3.7e-07 59.7 65 56.9


User provided reference genes

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