Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR102G2953 Punica granatum HOM05D004268 ORTHO05D004958 5.0e-49 197.6 109 100.0
Manes.06G163500 Manihot esculenta HOM05D004268 ORTHO05D004958 2.9e-25 118.6 112 65.2
Potri.001G256900 Populus trichocarpa HOM05D004268 ORTHO05D004958 1.1e-24 116.7 112 63.4
RcHm_v2.0_Chr5g0052351 Rosa chinensis HOM05D004268 ORTHO05D004958 7.2e-24 114.0 109 64.2
CiPaw.13G159300 Carya illinoinensis HOM05D004268 ORTHO05D004958 9.5e-24 113.6 113 64.6
FAN25G2913 Fragaria x ananassa HOM05D004268 ORTHO05D004958 3.6e-23 111.7 109 63.3
Gohir.A09G113900 Gossypium hirsutum HOM05D004268 ORTHO05D004958 1.4e-22 109.8 114 57.0
Gohir.D09G110500 Gossypium hirsutum HOM05D004268 ORTHO05D004958 1.4e-22 109.8 114 57.0
Medtr3g030850 Medicago truncatula HOM05D004268 ORTHO05D004958 4.0e-22 108.2 112 58.9
CiPaw.14G118100 Carya illinoinensis HOM05D004268 ORTHO05D004958 8.9e-22 107.1 111 62.2
TPR.G35302 Trifolium pratense HOM05D004268 ORTHO05D004958 8.9e-22 107.1 113 59.3
Nn2g15305 Nelumbo nucifera HOM05D004268 ORTHO05D004958 2.8e-20 102.1 109 61.5
QL01p004584 Quercus lobata HOM05D004268 ORTHO05D004958 2.8e-20 102.1 114 56.1
MELO3C014587.2 Cucumis melo HOM05D004268 ORTHO05D004958 3.7e-20 101.7 111 60.4
Cc06_g23280 Coffea canephora HOM05D004268 ORTHO05D004958 8.3e-20 100.5 115 59.1
Haze_23147 Corylus avellana HOM05D004268 ORTHO05D004958 1.1e-19 100.1 115 56.5
Actinidia23976 Actinidia chinensis HOM05D004268 ORTHO05D004958 1.4e-19 99.8 117 58.1
Duzib150G0004 Durio zibethinus HOM05D004268 ORTHO05D004958 1.4e-19 99.8 114 57.0
Medtr4g037505 Medicago truncatula HOM05D004268 ORTHO05D004958 1.8e-19 99.4 111 54.1
Cpa.g.sc84.45 Carica papaya HOM05D004268 ORTHO05D004958 2.4e-19 99.0 111 57.7
Psat7g196400 Pisum sativum HOM05D004268 ORTHO05D004958 3.1e-19 98.6 113 56.6
QL04p008292 Quercus lobata HOM05D004268 ORTHO05D004958 3.1e-19 98.6 111 56.8
Peaxi162Scf00032g00063 Petunia axillaris HOM05D004268 ORTHO05D004958 4.1e-19 98.2 113 53.1
Hma1.2p1_0368F.1_g137310 Hydrangea macrophylla HOM05D004268 ORTHO05D004958 1.2e-18 96.7 115 58.3
Potri.009G052500 Populus trichocarpa HOM05D004268 ORTHO05D004958 1.2e-18 96.7 112 58.0
VMungo1127G0621 Vigna mungo HOM05D004268 ORTHO05D004958 1.2e-18 96.7 113 55.8
Cfa009783 Carpinus fangiana HOM05D004268 ORTHO05D004958 1.6e-18 96.3 116 55.2
Psat5g208760 Pisum sativum HOM05D004268 ORTHO05D004958 2.0e-18 95.9 113 56.6
Aa31LG10G3570 Aethionema arabicum HOM05D004268 ORTHO05D004958 2.7e-18 95.5 114 54.4
AUR62000132 Chenopodium quinoa HOM05D004268 ORTHO05D004958 2.7e-18 95.5 109 56.0
AUR62019312 Chenopodium quinoa HOM05D004268 ORTHO05D004958 4.5e-18 94.7 109 56.0
TPR.G35305 Trifolium pratense HOM05D004268 ORTHO05D004958 4.5e-18 94.7 110 54.5
ClCG02G023150 Citrullus lanatus HOM05D004268 ORTHO05D004958 5.9e-18 94.4 111 55.9
Lsat_1_v5_gn_6_25460 Lactuca sativa HOM05D004268 ORTHO05D004958 5.9e-18 94.4 119 54.6
THA.LOC104816876 Tarenaya hassleriana HOM05D004268 ORTHO05D004958 5.9e-18 94.4 116 52.6
Sed0025860 Sechium edule HOM05D004268 ORTHO05D004958 1.0e-17 93.6 114 56.1
Medtr3g030860 Medicago truncatula HOM05D004268 ORTHO05D004958 1.3e-17 93.2 110 54.5
Ca_14452_v3 Cicer arietinum L. HOM05D003957 ORTHO05D004833 1.7e-17 92.8 111 55.0
Ca_14453_v3 Cicer arietinum L. HOM05D003957 ORTHO05D004833 1.7e-17 92.8 111 55.0
Lj3g0019333 Lotus japonicus HOM05D004268 ORTHO05D004958 1.7e-17 92.8 113 53.1
Ciclev10033132m.g Citrus clementina HOM05D004268 ORTHO05D004958 2.3e-17 92.4 115 53.9
Glyma.15G275600 Glycine max HOM05D004268 ORTHO05D004958 2.3e-17 92.4 113 56.6
Phvul.011G009700 Phaseolus vulgaris HOM05D004268 ORTHO05D004958 2.3e-17 92.4 113 54.9
TPR.G3668 Trifolium pratense HOM05D004268 ORTHO05D004958 2.3e-17 92.4 110 55.5
CARHR041550 Cardamine hirsuta HOM05D004268 ORTHO05D004958 2.9e-17 92.0 113 54.9
TWI34G1192 Tripterygium wilfordii HOM05D004268 ORTHO05D004958 2.9e-17 92.0 111 56.8
FAN21G1561 Fragaria x ananassa HOM05D004268 ORTHO05D004958 3.8e-17 91.7 108 55.6
SGA_v2.0_scaffold3G01494 Striga asiatica HOM05D004268 ORTHO05D004958 3.8e-17 91.7 112 52.7
AT1G51400 Arabidopsis thaliana HOM05D004268 ORTHO05D004958 5.0e-17 91.3 113 53.1
EL10Ac4g10238 Beta vulgaris HOM05D004268 ORTHO05D004958 5.0e-17 91.3 108 55.6
Cpa.g.sc125.13 Carica papaya HOM05D004268 ORTHO05D004958 5.0e-17 91.3 113 52.2
MBI02_g05661_MAGBIO Magnolia biondii HOM05D004268 ORTHO05D004958 5.0e-17 91.3 116 54.3
AL1G59250 Arabidopsis lyrata HOM05D004268 ORTHO05D004958 6.6e-17 90.9 113 54.9
Duzib168G1465 Durio zibethinus HOM05D004268 ORTHO05D004958 6.6e-17 90.9 114 52.6
Manes.14G003500 Manihot esculenta HOM05D004268 ORTHO05D004958 6.6e-17 90.9 112 54.5
COL.COLO4_06120 Corchorus olitorius HOM05D004268 ORTHO05D004958 8.6e-17 90.5 114 54.4
Thhalv10011883m.g Eutrema salsugineum HOM05D004268 ORTHO05D004958 8.6e-17 90.5 113 53.1
FvH4_3g28710 Fragaria vesca HOM05D004268 ORTHO05D004958 1.1e-16 90.1 109 56.0
FAN11G3362 Fragaria x ananassa HOM05D004268 ORTHO05D004958 1.1e-16 90.1 109 56.0
HanXRQChr02g0052031 Helianthus annuus HOM05D004268 ORTHO05D004958 1.1e-16 90.1 117 51.3
TAR633G1399 Trochodendron aralioides HOM05D004268 ORTHO05D004958 1.1e-16 90.1 114 53.5
PGR119G0693 Punica granatum HOM05D004268 ORTHO05D004958 2.5e-16 89.0 109 47.7
Thecc.01G409600 Theobroma cacao HOM05D004268 ORTHO05D004958 2.5e-16 89.0 112 56.2
Peaxi162Scf00004g00263 Petunia axillaris HOM05D004268 ORTHO05D004958 3.3e-16 88.6 112 52.7
Gohir.A08G143800 Gossypium hirsutum HOM05D004268 ORTHO05D004958 4.3e-16 88.2 116 49.1
Lj3g0003624 Lotus japonicus HOM05D004268 ORTHO05D004958 5.6e-16 87.8 107 54.2
Eucgr.B03692 Eucalyptus grandis HOM05D004268 ORTHO05D004958 7.3e-16 87.4 111 57.7
Gohir.D08G164800 Gossypium hirsutum HOM05D004268 ORTHO05D004958 7.3e-16 87.4 113 51.3
Gorai.004G171800 Gossypium raimondii HOM05D004268 ORTHO05D004958 7.3e-16 87.4 117 48.7
FAN16G2720 Fragaria x ananassa HOM05D004268 ORTHO05D004958 9.5e-16 87.0 109 54.1
BcaC08g43309 Brassica carinata HOM05D004268 ORTHO05D004958 4.7e-15 84.7 114 50.0
C06p06560 Brassica napus HOM05D004268 ORTHO05D004958 4.7e-15 84.7 114 50.0
BolC6t35768H Brassica oleracea HOM05D004268 ORTHO05D004958 4.7e-15 84.7 114 50.0
Sed0017781 Sechium edule HOM05D004268 ORTHO05D004958 4.7e-15 84.7 111 53.2
DCAR_029953 Daucus carota HOM05D004268 ORTHO05D004958 6.1e-15 84.3 115 49.6
Glyma.10G089500 Glycine max HOM05D004268 ORTHO05D004958 6.1e-15 84.3 112 50.9
Glyma.15G275700 Glycine max HOM05D004268 ORTHO05D004958 6.1e-15 84.3 114 55.3
Atru.chr11.2609 Acer truncatum HOM05D004268 ORTHO05D004958 1.0e-14 83.6 115 53.0
Sp1g38070 Schrenkiella parvula HOM05D004268 ORTHO05D004958 1.0e-14 83.6 109 47.7
A06p02510 Brassica napus HOM05D004268 ORTHO05D004958 1.4e-14 83.2 114 50.0
Ciclev10017247m.g Citrus clementina HOM05D004268 ORTHO05D004958 1.4e-14 83.2 115 49.6
Duzib138G1697 Durio zibethinus HOM05D004268 ORTHO05D004958 1.4e-14 83.2 113 52.2
Sc09g0000770 Simmondsia chinensis HOM05D004268 ORTHO05D004958 1.4e-14 83.2 116 47.4
EL10Ac2g04340 Beta vulgaris HOM05D004268 ORTHO05D004958 2.3e-14 82.4 111 45.9
unitig_8.g2993 Utricularia gibba HOM05D004268 ORTHO05D004958 2.3e-14 82.4 109 51.4
DCAR_002077 Daucus carota HOM05D004268 ORTHO05D004958 3.0e-14 82.0 119 45.4
Prupe.4G250700 Prunus persica HOM05D004268 ORTHO05D004958 3.0e-14 82.0 112 51.8
Glyma.10G089300 Glycine max HOM05D004268 ORTHO05D004958 4.0e-14 81.6 112 47.3
Atru.chr3.2699 Acer truncatum HOM05D004268 ORTHO05D004958 5.2e-14 81.3 116 49.1
Thhalv10021813m.g Eutrema salsugineum HOM05D004268 ORTHO05D004958 5.2e-14 81.3 110 51.8
Oeu063326.1 Olea europaea HOM05D004268 ORTHO05D004958 8.9e-14 80.5 116 47.4
Thecc.09G235200 Theobroma cacao HOM05D004268 ORTHO05D004958 8.9e-14 80.5 114 49.1
Rhsim01G0192200 Rhododendron simsii HOM05D004268 ORTHO05D004958 2.6e-13 79.0 112 50.9
Ah.10g038780 Amaranthus hybridus HOM05D000040 ORTHO05D000267 3.4e-13 78.6 107 45.8
DCAR_031628 Daucus carota HOM05D004268 ORTHO05D004958 3.4e-13 78.6 119 43.7
BraA03t13354Z Brassica rapa HOM05D004268 ORTHO05D004958 4.4e-13 78.2 110 50.0
BraA05t21659Z Brassica rapa HOM05D004268 ORTHO05D004958 4.4e-13 78.2 109 47.7
CDE05G3212 Ceratophyllum demersum HOM05D004268 ORTHO05D004958 5.8e-13 77.8 109 49.5
MBI04_g40114_MAGBIO Magnolia biondii HOM05D000074 ORTHO05D000220 5.8e-13 77.8 115 47.0
Nitab4.5_0004741g0020 Nicotiana tabacum HOM05D004268 ORTHO05D004958 7.5e-13 77.4 97 47.4
C03p51410 Brassica napus HOM05D004268 ORTHO05D004958 9.8e-13 77.0 109 48.6
Ah.06g194080 Amaranthus hybridus HOM05D004268 ORTHO05D004958 1.3e-12 76.6 112 49.1
BcaC05g28213 Brassica carinata HOM05D004268 ORTHO05D004958 2.2e-12 75.9 109 47.7
C05p43040 Brassica napus HOM05D004268 ORTHO05D004958 2.2e-12 75.9 109 47.7
BolC5t33035H Brassica oleracea HOM05D004268 ORTHO05D004958 2.2e-12 75.9 109 47.7
PSO541G0301 Papaver somniferum HOM05D004268 ORTHO05D004958 2.2e-12 75.9 114 50.9
BcaB06g26173 Brassica carinata HOM05D004268 ORTHO05D004958 2.9e-12 75.5 109 47.7
CARHR096900 Cardamine hirsuta HOM05D004268 ORTHO05D004958 2.9e-12 75.5 109 48.6
Duzib133G0767 Durio zibethinus HOM05D004268 ORTHO05D004958 2.9e-12 75.5 114 49.1
THA.LOC104817911 Tarenaya hassleriana HOM05D004268 ORTHO05D004958 2.9e-12 75.5 114 47.4
Carub.0003s2095 Capsella rubella HOM05D004268 ORTHO05D004958 4.9e-12 74.7 109 46.8
Nitab4.5_0002741g0120 Nicotiana tabacum HOM05D004268 ORTHO05D004958 6.4e-12 74.3 110 47.3
QL01p004491 Quercus lobata HOM05D004268 ORTHO05D004958 6.4e-12 74.3 114 45.6
Aa31LG8G7770 Aethionema arabicum HOM05D004268 ORTHO05D004958 8.3e-12 73.9 113 44.2
A05p27660 Brassica napus HOM05D004268 ORTHO05D004958 8.3e-12 73.9 109 46.8
MD11G1191900 Malus domestica HOM05D004268 ORTHO05D004958 8.3e-12 73.9 115 48.7
AT3G21055 Arabidopsis thaliana HOM05D004268 ORTHO05D004958 1.1e-11 73.6 109 46.8
Os02g0581100 Oryza sativa ssp. japonica HOM05D004268 ORTHO05D004958 1.4e-11 73.2 126 46.8
CDE05G0821 Ceratophyllum demersum HOM05D004268 ORTHO05D004958 1.9e-11 72.8 101 45.5
MD03G1173700 Malus domestica HOM05D004268 ORTHO05D004958 1.9e-11 72.8 115 47.8
AL3G35000 Arabidopsis lyrata HOM05D004268 ORTHO05D004958 2.4e-11 72.4 109 46.8
Dinv09347 Davidia involucrata HOM05D004268 ORTHO05D004958 5.4e-11 71.2 99 50.5
Nn7g36237 Nelumbo nucifera HOM05D004268 ORTHO05D004958 5.4e-11 71.2 115 49.6
Nn7g36238 Nelumbo nucifera HOM05D004268 ORTHO05D004958 5.4e-11 71.2 115 49.6
CANSAT54G2544 Cannabis sativa HOM05D004268 ORTHO05D004958 7.0e-11 70.9 116 46.6
TWI32G0064 Tripterygium wilfordii HOM05D004268 ORTHO05D004958 7.0e-11 70.9 109 48.6
BcaC01g03530 Brassica carinata HOM05D004268 ORTHO05D004958 2.0e-10 69.3 109 45.0
BolC3t17427H Brassica oleracea HOM05D004268 ORTHO05D004958 2.0e-10 69.3 109 45.0
CAN.G821.8 Capsicum annuum HOM05D004268 ORTHO05D004958 2.7e-10 68.9 91 45.1
Zm00001eb245320 Zea mays HOM05D004268 ORTHO05D004958 3.5e-10 68.6 111 47.7
ECA233G4176 Erigeron canadensis HOM05D004268 ORTHO05D004958 4.6e-10 68.2 119 44.5
Peaxi162Scf00032g00064 Petunia axillaris HOM05D004268 ORTHO05D004958 5.0e-09 64.7 115 42.6
TAR623G0940 Trochodendron aralioides HOM05D004268 ORTHO05D004958 6.6e-09 64.3 113 43.4
PGSC0003DMG400004639 Solanum tuberosum HOM05D004268 ORTHO05D004958 1.1e-08 63.5 113 38.9
CSS0050517 Camellia sinensis var. sinensis HOM05D004268 ORTHO05D004958 1.5e-08 63.2 116 42.2
Nitab4.5_0004438g0050 Nicotiana tabacum HOM05D004268 ORTHO05D004958 1.9e-08 62.8 113 41.6
Rhsim01G0129200 Rhododendron simsii HOM05D000074 ORTHO05D004958 3.3e-08 62.0 101 46.5
Migut.N02326 Erythranthe guttata HOM05D004268 ORTHO05D004958 4.3e-08 61.6 39 76.9
Dinv22170 Davidia involucrata HOM05D004268 ORTHO05D004958 5.6e-08 61.2 98 50.0
BcaC09g49044 Brassica carinata HOM05D004268 ORTHO05D004958 9.5e-08 60.5 112 43.8
PGSC0003DMG400010498 Solanum tuberosum HOM05D004268 ORTHO05D004958 1.6e-07 59.7 62 53.2
ATR0763G199 Amborella trichopoda HOM05D004268 ORTHO05D004958 2.8e-07 58.9 80 41.2
BraA06t23458Z Brassica rapa HOM05D004268 ORTHO05D004958 2.8e-07 58.9 40 67.5
SEGI_11181 Sequoiadendron giganteum HOM05D004268 ORTHO05D004958 2.8e-07 58.9 121 40.5
Lalb_Chr01g0000351 Lupinus albus HOM05D004268 ORTHO05D004958 3.6e-07 58.5 107 41.1
Sopen01g004050 Solanum pennellii HOM05D004268 ORTHO05D004958 3.6e-07 58.5 68 52.9
HanXRQChr13g0401101 Helianthus annuus HOM05D004268 ORTHO05D004958 4.7e-07 58.2 117 42.7
Solyc01g008510.3 Solanum lycopersicum HOM05D004268 ORTHO05D004958 6.2e-07 57.8 68 51.5
Dinv43432 Davidia involucrata HOM05D004268 ORTHO05D004958 8.0e-07 57.4 97 48.5
Mapoly0111s0017 Marchantia polymorpha HOM05D024154 ORTHO05D023530 1.4e-06 56.6 118 38.1
Oeu033136.1 Olea europaea HOM05D004268 ORTHO05D004958 1.4e-06 56.6 39 71.8
Migut.D00609 Erythranthe guttata HOM05D004268 ORTHO05D004958 1.8e-06 56.2 37 64.9
Aqoxy1G00277 Aquilegia oxysepala HOM05D004268 ORTHO05D004958 3.1e-06 55.5 39 71.8
PGSC0003DMG400019098 Solanum tuberosum HOM05D004268 ORTHO05D004958 3.1e-06 55.5 63 54.0
BcaB07g33586 Brassica carinata HOM05D004268 ORTHO05D004958 4.0e-06 55.1 28 82.1
C01p43220 Brassica napus HOM05D004268 ORTHO05D004958 4.0e-06 55.1 110 41.8
A01p33800 Brassica napus HOM05D004268 ORTHO05D004958 6.8e-06 54.3 110 41.8
CBR_g18875 Chara braunii HOM05D024154 ORTHO05D023530 6.8e-06 54.3 114 35.1
Nitab4.5_0002741g0110 Nicotiana tabacum HOM05D004268 ORTHO05D004958 6.8e-06 54.3 38 65.8
Solyc12g099650.2 Solanum lycopersicum HOM05D004268 ORTHO05D004958 6.8e-06 54.3 113 37.2


User provided reference genes

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