Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR102G2925 Punica granatum HOM05D005853 ORTHO05D007308 2.7e-45 185.7 153 100.0
Medtr4g012810 Medicago truncatula HOM05D005853 ORTHO05D007308 4.1e-17 92.0 79 63.3
MD02G1047200 Malus domestica HOM05D005853 ORTHO05D007308 1.6e-16 90.1 73 64.4
FvH4_1g04830 Fragaria vesca HOM05D000050 ORTHO05D009634 2.1e-16 89.7 43 93.0
FAN19G0481 Fragaria x ananassa HOM05D000050 ORTHO05D009634 2.1e-16 89.7 43 93.0
FAN26G1381 Fragaria x ananassa HOM05D000050 ORTHO05D009634 2.1e-16 89.7 43 93.0
Eucgr.J02982 Eucalyptus grandis HOM05D005853 ORTHO05D007308 2.7e-16 89.4 122 54.1
TAR624G1380 Trochodendron aralioides HOM05D005853 ORTHO05D007308 6.0e-16 88.2 78 61.5
Hma1.2p1_1455F.1_g284500 Hydrangea macrophylla HOM05D005853 ORTHO05D007308 7.8e-16 87.8 50 84.0
Gohir.D05G024300 Gossypium hirsutum HOM05D005853 ORTHO05D007308 1.0e-15 87.4 68 61.8
THA.LOC104808760 Tarenaya hassleriana HOM05D005853 ORTHO05D007308 1.0e-15 87.4 76 63.2
Nitab4.5_0000129g0220 Nicotiana tabacum HOM05D005853 ORTHO05D007308 1.3e-15 87.0 43 95.3
Nitab4.5_0001983g0030 Nicotiana tabacum HOM05D005853 ORTHO05D007308 1.3e-15 87.0 43 95.3
Gorai.009G024500 Gossypium raimondii HOM05D005853 ORTHO05D007308 1.7e-15 86.7 68 61.8
Prupe.3G069800 Prunus persica HOM05D005853 ORTHO05D007308 2.3e-15 86.3 56 75.0
Gohir.D05G024400 Gossypium hirsutum HOM05D005853 ORTHO05D007308 3.0e-15 85.9 68 61.8
Gorai.009G024400 Gossypium raimondii HOM05D005853 ORTHO05D007308 3.0e-15 85.9 68 60.3
Phvul.010G149900 Phaseolus vulgaris HOM05D005853 ORTHO05D007308 3.0e-15 85.9 43 90.7
TAR636G2025 Trochodendron aralioides HOM05D005853 ORTHO05D007308 3.0e-15 85.9 43 93.0
CSS0027693 Camellia sinensis var. sinensis HOM05D005853 ORTHO05D007308 3.9e-15 85.5 71 66.2
Glyma.07G005500 Glycine max HOM05D005853 ORTHO05D007308 3.9e-15 85.5 43 90.7
Glyma.08G205900 Glycine max HOM05D005853 ORTHO05D007308 3.9e-15 85.5 43 90.7
Gohir.A05G022800 Gossypium hirsutum HOM05D005853 ORTHO05D007308 3.9e-15 85.5 68 60.3
Gohir.A05G022900 Gossypium hirsutum HOM05D005853 ORTHO05D007308 3.9e-15 85.5 68 61.8
RcHm_v2.0_Chr2g0090481 Rosa chinensis HOM05D005853 ORTHO05D007308 3.9e-15 85.5 43 88.4
Cc04_g03260 Coffea canephora HOM05D005853 ORTHO05D007308 5.1e-15 85.1 49 81.6
COL.COLO4_34918 Corchorus olitorius HOM05D005853 ORTHO05D007308 5.1e-15 85.1 73 56.2
ECA240G1876 Erigeron canadensis HOM05D005853 ORTHO05D007308 5.1e-15 85.1 84 57.1
VMungo0331G1451 Vigna mungo HOM05D005853 ORTHO05D007308 5.1e-15 85.1 43 90.7
MSTRG.22678 Avicennia marina HOM05D005853 ORTHO05D007308 6.6e-15 84.7 107 51.4
Dinv41601 Davidia involucrata HOM05D005853 ORTHO05D007308 6.6e-15 84.7 95 51.6
Peaxi162Scf00329g00432 Petunia axillaris HOM05D005853 ORTHO05D007308 6.6e-15 84.7 43 90.7
Ah.01g021430 Amaranthus hybridus HOM05D005853 ORTHO05D007308 8.6e-15 84.3 42 92.9
Lalb_Chr22g0351311 Lupinus albus HOM05D005853 ORTHO05D007308 8.6e-15 84.3 43 90.7
Migut.I00880 Erythranthe guttata HOM05D005853 ORTHO05D007308 1.1e-14 84.0 66 68.2
Lj3g0010943 Lotus japonicus HOM05D005853 ORTHO05D007308 1.1e-14 84.0 39 97.4
Oeu033499.2 Olea europaea HOM05D005853 ORTHO05D007308 1.1e-14 84.0 43 88.4
QL02p085450 Quercus lobata HOM05D005853 ORTHO05D007308 1.9e-14 83.2 62 66.1
unitig_22.g5469 Utricularia gibba HOM05D005853 ORTHO05D007308 1.9e-14 83.2 47 85.1
Thecc.06G089900 Theobroma cacao HOM05D005853 ORTHO05D007308 2.5e-14 82.8 41 90.2
ClCG06G008520 Citrullus lanatus HOM05D005853 ORTHO05D007308 3.3e-14 82.4 78 60.3
CANSAT56G2684 Cannabis sativa HOM05D005853 ORTHO05D007308 4.3e-14 82.0 38 94.7
Gorai.010G070700 Gossypium raimondii HOM05D005853 ORTHO05D007308 4.3e-14 82.0 61 70.5
SGA_v2.0_scaffold5G02572 Striga asiatica HOM05D005853 ORTHO05D007308 4.3e-14 82.0 78 59.0
Thecc.09G110800 Theobroma cacao HOM05D005853 ORTHO05D007308 4.3e-14 82.0 80 55.0
Gohir.D06G060700 Gossypium hirsutum HOM05D005853 ORTHO05D007308 5.6e-14 81.6 66 63.6
Psat7g250480 Pisum sativum HOM05D005853 ORTHO05D007308 5.6e-14 81.6 80 58.8
Manes.03G020200 Manihot esculenta HOM05D005853 ORTHO05D007308 7.3e-14 81.3 69 62.3
Prupe.7G230800 Prunus persica HOM05D005853 ORTHO05D007308 7.3e-14 81.3 47 78.7
SalBow2G1576 Salvia bowleyana HOM05D005853 ORTHO05D007308 7.3e-14 81.3 75 62.7
FvH4_6g31380 Fragaria vesca HOM05D005853 ORTHO05D007308 9.5e-14 80.9 76 57.9
MBI13_g01620_MAGBIO Magnolia biondii HOM05D005853 ORTHO05D007308 9.5e-14 80.9 69 62.3
Solyc04g008710.4 Solanum lycopersicum HOM05D005853 ORTHO05D007308 9.5e-14 80.9 45 86.7
Sopen04g003890 Solanum pennellii HOM05D005853 ORTHO05D007308 9.5e-14 80.9 45 86.7
RcHm_v2.0_Chr2g0138141 Rosa chinensis HOM05D005853 ORTHO05D007308 1.2e-13 80.5 41 87.8
CSS0003127 Camellia sinensis var. sinensis HOM05D005853 ORTHO05D007308 1.6e-13 80.1 46 82.6
CSS0011641 Camellia sinensis var. sinensis HOM05D005853 ORTHO05D007308 1.6e-13 80.1 46 82.6
Cpa.g.sc23.111 Carica papaya HOM05D005853 ORTHO05D007308 1.6e-13 80.1 82 57.3
CDE07G2010 Ceratophyllum demersum HOM05D005853 ORTHO05D007308 1.6e-13 80.1 42 85.7
Haze_25712 Corylus avellana HOM05D005853 ORTHO05D007308 1.6e-13 80.1 45 80.0
Duzib187G1793 Durio zibethinus HOM05D005853 ORTHO05D007308 1.6e-13 80.1 67 61.2
Gohir.A06G062400 Gossypium hirsutum HOM05D005853 ORTHO05D007308 1.6e-13 80.1 61 68.9
MSTRG.11072 Avicennia marina HOM05D005853 ORTHO05D007308 2.1e-13 79.7 82 59.8
Manes.16G116400 Manihot esculenta HOM05D005853 ORTHO05D007308 2.1e-13 79.7 45 82.2
THA.LOC104804586 Tarenaya hassleriana HOM05D005853 ORTHO05D007308 2.1e-13 79.7 45 80.0
AL3G50100 Arabidopsis lyrata HOM05D005853 ORTHO05D007308 2.8e-13 79.3 59 66.1
CDE04G2734 Ceratophyllum demersum HOM05D005853 ORTHO05D007308 2.8e-13 79.3 38 94.7
PGR102G0312 Punica granatum HOM05D005853 ORTHO05D007308 2.8e-13 79.3 87 74.7
Sp3g30580 Schrenkiella parvula HOM05D005853 ORTHO05D007308 2.8e-13 79.3 45 77.8
Carub.0003s2483 Capsella rubella HOM05D005853 ORTHO05D007308 3.6e-13 79.0 83 54.2
Carub.0003s3118 Capsella rubella HOM05D005853 ORTHO05D007308 3.6e-13 79.0 64 60.9
CiPaw.04G164300 Carya illinoinensis HOM05D005853 ORTHO05D007308 3.6e-13 79.0 42 81.0
Ciclev10009718m.g Citrus clementina HOM05D005853 ORTHO05D007308 3.6e-13 79.0 43 81.4
AL3G39990 Arabidopsis lyrata HOM05D005853 ORTHO05D007308 4.7e-13 78.6 64 64.1
BcaB03g16471 Brassica carinata HOM05D005853 ORTHO05D007308 6.2e-13 78.2 75 62.7
Nn2g11754 Nelumbo nucifera HOM05D005853 ORTHO05D007308 6.2e-13 78.2 42 88.1
Sc12g0009330 Simmondsia chinensis HOM05D005853 ORTHO05D007308 6.2e-13 78.2 44 84.1
GSVIVG01017090001 Vitis vinifera HOM05D005853 ORTHO05D007308 6.2e-13 78.2 35 100.0
ATR0724G055 Amborella trichopoda HOM05D005853 ORTHO05D007308 8.1e-13 77.8 70 60.0
AT3G24506 Arabidopsis thaliana HOM05D005853 ORTHO05D007308 8.1e-13 77.8 45 75.6
AT2G17240 Arabidopsis thaliana HOM05D005853 ORTHO05D007308 1.1e-12 77.4 45 77.8
Potri.018G079700 Populus trichocarpa HOM05D005853 ORTHO05D007308 1.1e-12 77.4 48 70.8
Aa31LG8G14610 Aethionema arabicum HOM05D005853 ORTHO05D007308 1.4e-12 77.0 45 75.6
arahy.Tifrunner.gnm1.ann1.84WEKL Arachis hypogaea HOM05D005853 ORTHO05D007308 1.4e-12 77.0 49 79.6
arahy.Tifrunner.gnm1.ann1.JCT5CV Arachis hypogaea HOM05D005853 ORTHO05D007308 1.4e-12 77.0 49 79.6
A07p03810 Brassica napus HOM05D005853 ORTHO05D007308 1.4e-12 77.0 84 52.4
MD09G1211800 Malus domestica HOM05D005853 ORTHO05D007308 1.4e-12 77.0 58 65.5
PSO210G6545 Papaver somniferum HOM05D005853 ORTHO05D007308 1.4e-12 77.0 40 87.5
Sed0019935 Sechium edule HOM05D005853 ORTHO05D007308 1.4e-12 77.0 45 80.0
Atru.chr7.1347 Acer truncatum HOM05D005853 ORTHO05D007308 1.8e-12 76.6 42 83.3
PGSC0003DMG400025300 Solanum tuberosum HOM05D005853 ORTHO05D007308 1.8e-12 76.6 40 90.0
BcaC01g02942 Brassica carinata HOM05D005853 ORTHO05D007308 2.3e-12 76.3 38 86.8
BcaC06g36242 Brassica carinata HOM05D005853 ORTHO05D007308 2.3e-12 76.3 68 57.4
A06p34130 Brassica napus HOM05D005853 ORTHO05D007308 2.3e-12 76.3 38 86.8
C03p58060 Brassica napus HOM05D005853 ORTHO05D007308 2.3e-12 76.3 38 86.8
C07p06090 Brassica napus HOM05D005853 ORTHO05D007308 2.3e-12 76.3 68 57.4
BolC3t18080H Brassica oleracea HOM05D005853 ORTHO05D007308 2.3e-12 76.3 38 86.8
BolC7t41022H Brassica oleracea HOM05D005853 ORTHO05D007308 2.3e-12 76.3 68 57.4
BraA06t26346Z Brassica rapa HOM05D005853 ORTHO05D007308 2.3e-12 76.3 38 86.8
DCAR_028712 Daucus carota HOM05D005181 ORTHO05D006086 2.3e-12 76.3 68 63.2
HanXRQChr09g0239771 Helianthus annuus HOM05D005853 ORTHO05D007308 2.3e-12 76.3 78 53.8
Gohir.A08G241100 Gossypium hirsutum HOM05D005853 ORTHO05D007308 3.1e-12 75.9 73 53.4
Lsat_1_v5_gn_7_40661 Lactuca sativa HOM05D005853 ORTHO05D007308 3.1e-12 75.9 38 86.8
BraA07t28175Z Brassica rapa HOM05D005853 ORTHO05D007308 4.0e-12 75.5 107 44.9
TPR.G17682 Trifolium pratense HOM05D005853 ORTHO05D007308 4.0e-12 75.5 57 66.7
TWI34G0492 Tripterygium wilfordii HOM05D005853 ORTHO05D007308 4.0e-12 75.5 72 54.2
BcaB08g34716 Brassica carinata HOM05D005853 ORTHO05D007308 6.8e-12 74.7 79 53.2
Zm00001eb184630 Zea mays HOM05D005853 ORTHO05D007308 8.9e-12 74.3 79 53.2
GSVIVG01015393001 Vitis vinifera HOM05D005853 ORTHO05D007308 1.2e-11 73.9 35 91.4
CiPaw.03G232300 Carya illinoinensis HOM05D005853 ORTHO05D007308 1.5e-11 73.6 35 88.6
Thhalv10022893m.g Eutrema salsugineum HOM05D005853 ORTHO05D007308 1.5e-11 73.6 50 72.0
PSO210G7285 Papaver somniferum HOM05D005853 ORTHO05D007308 1.5e-11 73.6 40 82.5
Mapoly0029s0025 Marchantia polymorpha HOM05D005853 ORTHO05D007308 2.0e-11 73.2 35 88.6
Pp3c1_36270 Physcomitrium patens HOM05D005853 ORTHO05D007308 3.4e-11 72.4 83 50.6
Sed0009205 Sechium edule HOM05D005853 ORTHO05D007308 3.4e-11 72.4 35 88.6
SMO347G0073 Selaginella moellendorffii HOM05D005853 ORTHO05D007308 3.4e-11 72.4 35 88.6
Zm00001eb247070 Zea mays HOM05D005853 ORTHO05D007308 3.4e-11 72.4 72 56.9
CsaV3_1G030480 Cucumis sativus L. HOM05D005853 ORTHO05D007308 4.4e-11 72.0 66 59.1
Lsat_1_v5_gn_8_95440 Lactuca sativa HOM05D005853 ORTHO05D007308 4.4e-11 72.0 76 52.6
Aqoxy7G03791 Aquilegia oxysepala HOM05D005853 ORTHO05D007308 5.8e-11 71.6 45 77.8
Duzib150G0727 Durio zibethinus HOM05D005853 ORTHO05D007308 5.8e-11 71.6 38 81.6
Os02g0614200 Oryza sativa ssp. japonica HOM05D005853 ORTHO05D007308 5.8e-11 71.6 47 74.5
Pp3c2_3480 Physcomitrium patens HOM05D005853 ORTHO05D007308 5.8e-11 71.6 35 88.6
MELO3C025336.2 Cucumis melo HOM05D005853 ORTHO05D007308 9.9e-11 70.9 93 48.4
CBR_g48216 Chara braunii HOM05D005853 ORTHO05D007308 4.9e-10 68.6 76 52.6
SEGI_01601 Sequoiadendron giganteum HOM05D005853 ORTHO05D007308 4.1e-09 65.5 59 50.8


User provided reference genes

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