Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR102G2828 Punica granatum HOM05D004280 ORTHO05D005059 4.5e-104 381.3 201 100.0
Dinv23876 Davidia involucrata HOM05D004280 ORTHO05D005059 1.9e-78 296.2 195 77.9
Manes.01G036600 Manihot esculenta HOM05D004280 ORTHO05D005059 1.6e-77 293.1 194 78.9
CSS0019544 Camellia sinensis var. sinensis HOM05D004280 ORTHO05D005059 6.1e-77 291.2 194 77.8
Potri.003G218700 Populus trichocarpa HOM05D004280 ORTHO05D005059 6.1e-77 291.2 194 77.3
Phvul.001G056600 Phaseolus vulgaris HOM05D004280 ORTHO05D005059 4.4e-75 285.0 195 76.4
Nn7g35895 Nelumbo nucifera HOM05D004280 ORTHO05D005059 9.7e-75 283.9 194 75.3
ECA233G4188 Erigeron canadensis HOM05D004280 ORTHO05D005059 3.7e-74 282.0 194 74.7
Potri.001G006300 Populus trichocarpa HOM05D004280 ORTHO05D005059 1.1e-73 280.4 185 76.2
Glyma.06G309800 Glycine max HOM05D004280 ORTHO05D005059 1.4e-73 280.0 195 75.4
Glyma.14G130400 Glycine max HOM05D004280 ORTHO05D005059 1.4e-73 280.0 195 75.4
CSS0019811 Camellia sinensis var. sinensis HOM05D004280 ORTHO05D005059 2.4e-73 279.3 194 76.3
Glyma.14G154000 Glycine max HOM05D004280 ORTHO05D005059 5.3e-73 278.1 195 74.9
CiPaw.13G175600 Carya illinoinensis HOM05D004280 ORTHO05D005059 1.6e-72 276.6 196 74.0
MELO3C021620.2 Cucumis melo HOM05D004280 ORTHO05D005059 2.0e-72 276.2 194 73.7
MSTRG.18872 Avicennia marina HOM05D004280 ORTHO05D005059 2.7e-72 275.8 194 74.7
Lj2A726G7 Lonicera japonica HOM05D004280 ORTHO05D005059 2.7e-72 275.8 196 75.0
TWI60G1521 Tripterygium wilfordii HOM05D004280 ORTHO05D005059 3.5e-72 275.4 194 74.7
CANSAT01G2556 Cannabis sativa HOM05D004280 ORTHO05D005059 4.5e-72 275.0 201 74.1
Hma1.2p1_0843F.1_g227335 Hydrangea macrophylla HOM05D004280 ORTHO05D005059 1.0e-71 273.9 178 79.2
Hma1.2p1_0843F.1_g227340 Hydrangea macrophylla HOM05D004280 ORTHO05D005059 1.0e-71 273.9 178 79.2
FvH4_3g45340 Fragaria vesca HOM05D004280 ORTHO05D005059 1.3e-71 273.5 198 70.7
Ciclev10016632m.g Citrus clementina HOM05D004280 ORTHO05D005059 2.2e-71 272.7 195 72.8
VMungo0647G2277 Vigna mungo HOM05D004280 ORTHO05D005059 2.9e-71 272.3 195 74.9
ClCG09G019650 Citrullus lanatus HOM05D004280 ORTHO05D005059 5.0e-71 271.6 213 70.0
Medtr3g083880 Medicago truncatula HOM05D004280 ORTHO05D005059 5.0e-71 271.6 195 73.3
Manes.04G095700 Manihot esculenta HOM05D004280 ORTHO05D005059 6.5e-71 271.2 194 73.2
CiPaw.16G086400 Carya illinoinensis HOM05D004280 ORTHO05D005059 1.5e-70 270.0 196 71.4
Ca_16394_v3 Cicer arietinum L. HOM05D004280 ORTHO05D005059 1.5e-70 270.0 195 72.3
TPR.G24159 Trifolium pratense HOM05D004280 ORTHO05D005059 2.5e-70 269.2 200 72.0
ECA248G0362 Erigeron canadensis HOM05D004280 ORTHO05D005059 3.2e-70 268.9 196 73.0
Cpa.g.sc119.63 Carica papaya HOM05D004280 ORTHO05D005059 4.2e-70 268.5 196 73.0
Migut.D02547 Erythranthe guttata HOM05D004280 ORTHO05D005059 4.2e-70 268.5 195 73.8
QL01p008475 Quercus lobata HOM05D004280 ORTHO05D005059 4.2e-70 268.5 196 72.4
Lj6g0003060 Lotus japonicus HOM05D004280 ORTHO05D005059 5.5e-70 268.1 195 73.3
Glyma.11G173655 Glycine max HOM05D004280 ORTHO05D005059 1.2e-69 266.9 196 74.0
CsaV3_5G026740 Cucumis sativus L. HOM05D004280 ORTHO05D005059 1.0e-68 263.8 194 70.6
Prupe.6G007100 Prunus persica HOM05D004280 ORTHO05D005059 1.0e-68 263.8 195 70.3
Psat5g102320 Pisum sativum HOM05D004280 ORTHO05D005059 3.0e-68 262.3 196 70.9
Sc10g0001010 Simmondsia chinensis HOM05D004280 ORTHO05D005059 3.0e-68 262.3 194 71.1
DCAR_009024 Daucus carota HOM05D004280 ORTHO05D005059 6.8e-68 261.2 202 70.3
Haze_22962 Corylus avellana HOM05D004280 ORTHO05D005059 8.8e-68 260.8 197 71.6
Atru.chr1.3614 Acer truncatum HOM05D004280 ORTHO05D005059 1.2e-67 260.4 195 70.3
Haze_22956 Corylus avellana HOM05D004280 ORTHO05D005059 1.2e-67 260.4 197 71.6
SalBow6G7108 Salvia bowleyana HOM05D004280 ORTHO05D005059 1.2e-67 260.4 194 69.6
Thecc.09G208500 Theobroma cacao HOM05D004280 ORTHO05D005059 1.5e-67 260.0 177 75.7
RhsimUnG0194900 Rhododendron simsii HOM05D004280 ORTHO05D005059 5.7e-67 258.1 203 69.0
vmacro00623 Vaccinium macrocarpon HOM05D004280 ORTHO05D005059 9.8e-67 257.3 206 68.9
Rhsim09G0027500 Rhododendron simsii HOM05D004280 ORTHO05D005059 2.2e-66 256.1 203 68.5
Duzib170G0536 Durio zibethinus HOM05D004280 ORTHO05D005059 3.7e-66 255.4 170 76.5
RcHm_v2.0_Chr4g0431981 Rosa chinensis HOM05D004280 ORTHO05D005059 6.3e-66 254.6 198 69.2
RcHm_v2.0_Chr5g0083141 Rosa chinensis HOM05D004280 ORTHO05D005059 6.3e-66 254.6 198 69.2
Sed0023881 Sechium edule HOM05D004280 ORTHO05D005059 8.3e-66 254.2 147 85.7
Sabra01G0004700 Salix brachista HOM05D004280 ORTHO05D005059 1.4e-65 253.4 188 69.7
FAN21G3004 Fragaria x ananassa HOM05D004280 ORTHO05D005059 3.1e-65 252.3 198 67.2
Gohir.D08G021800 Gossypium hirsutum HOM05D004280 ORTHO05D005059 3.1e-65 252.3 179 74.3
Lsat_1_v5_gn_1_67700 Lactuca sativa HOM05D004280 ORTHO05D005059 3.1e-65 252.3 194 69.6
GSVIVG01025433001 Vitis vinifera HOM05D004280 ORTHO05D005059 4.1e-65 251.9 144 86.8
Solyc04g076580.4 Solanum lycopersicum HOM05D004280 ORTHO05D005059 9.1e-65 250.8 194 68.0
CAN.G193.6 Capsicum annuum HOM05D004280 ORTHO05D005059 1.2e-64 250.4 194 69.1
Eucgr.B03612 Eucalyptus grandis HOM05D004280 ORTHO05D005059 3.5e-64 248.8 147 85.7
AT1G55300 Arabidopsis thaliana HOM05D004280 ORTHO05D005059 4.5e-64 248.4 197 65.5
Gohir.A08G011300 Gossypium hirsutum HOM05D004280 ORTHO05D005059 1.3e-63 246.9 160 77.5
Aqoxy7G03617 Aquilegia oxysepala HOM05D004280 ORTHO05D005059 1.7e-63 246.5 169 74.6
FAN16G1471 Fragaria x ananassa HOM05D004280 ORTHO05D005059 3.8e-63 245.4 228 59.2
Ah.04g157750 Amaranthus hybridus HOM05D004280 ORTHO05D005059 5.0e-63 245.0 204 65.2
FAN25G1542 Fragaria x ananassa HOM05D004280 ORTHO05D005059 5.0e-63 245.0 147 81.0
Peaxi162Scf01112g00112 Petunia axillaris HOM05D004280 ORTHO05D005059 6.6e-63 244.6 194 67.0
MBI05_g32463_MAGBIO Magnolia biondii HOM05D004280 ORTHO05D005059 1.1e-62 243.8 195 66.7
Duzib150G0115 Durio zibethinus HOM05D004280 ORTHO05D005059 1.5e-62 243.4 168 75.0
FAN11G0747 Fragaria x ananassa HOM05D004280 ORTHO05D005059 3.3e-62 242.3 147 80.3
Gorai.004G017100 Gossypium raimondii HOM05D004280 ORTHO05D005059 4.2e-62 241.9 147 81.6
HPP92_017297 Vanilla planifolia HOM05D004280 ORTHO05D005059 7.2e-62 241.1 149 80.5
TAR623G1159 Trochodendron aralioides HOM05D004280 ORTHO05D005059 9.5e-62 240.7 147 79.6
Carub.0001s4380 Capsella rubella HOM05D004280 ORTHO05D005059 1.2e-61 240.4 197 64.0
CARHR044950 Cardamine hirsuta HOM05D004280 ORTHO05D005059 1.2e-61 240.4 199 63.3
arahy.Tifrunner.gnm1.ann1.0AF3IJ Arachis hypogaea HOM05D004280 ORTHO05D005059 1.6e-61 240.0 150 81.3
Thhalv10011786m.g Eutrema salsugineum HOM05D004280 ORTHO05D005059 1.6e-61 240.0 183 67.8
SalBow4G3146 Salvia bowleyana HOM05D004280 ORTHO05D005059 2.1e-61 239.6 240 57.1
PSO210G5203 Papaver somniferum HOM05D004280 ORTHO05D005059 4.7e-61 238.4 169 75.7
PSO761G0405 Papaver somniferum HOM05D004280 ORTHO05D005059 4.7e-61 238.4 169 75.7
Sabra03G0163100 Salix brachista HOM05D004280 ORTHO05D005059 1.0e-60 237.3 147 80.3
SEGI_26181 Sequoiadendron giganteum HOM05D004280 ORTHO05D005059 1.4e-60 236.9 198 62.6
unitig_749.g13584 Utricularia gibba HOM05D004280 ORTHO05D005059 1.8e-60 236.5 144 82.6
BcaC08g44186 Brassica carinata HOM05D004280 ORTHO05D005059 3.0e-60 235.7 184 67.4
Aa31LG10G1060 Aethionema arabicum HOM05D004280 ORTHO05D005059 4.0e-60 235.3 181 66.3
Ah.04g157660 Amaranthus hybridus HOM05D004280 ORTHO05D005059 4.0e-60 235.3 204 63.2
BcaB02g10831 Brassica carinata HOM05D004280 ORTHO05D005059 1.2e-59 233.8 152 74.3
BraA05t20650Z Brassica rapa HOM05D004280 ORTHO05D005059 1.2e-59 233.8 204 61.3
COL.COLO4_35029 Corchorus olitorius HOM05D004280 ORTHO05D005059 1.2e-59 233.8 174 71.8
Sp1g40960 Schrenkiella parvula HOM05D004280 ORTHO05D005059 1.5e-59 233.4 205 62.9
Hund03769 Selenicereus undatus HOM05D004280 ORTHO05D005059 1.5e-59 233.4 141 81.6
SGA_v2.0_scaffold13G06338 Striga asiatica HOM05D004280 ORTHO05D005059 2.0e-59 233.0 147 83.0
Os05g0347000 Oryza sativa ssp. japonica HOM05D004280 ORTHO05D005059 4.4e-59 231.9 201 65.7
C06p15910 Brassica napus HOM05D004280 ORTHO05D005059 7.5e-59 231.1 184 65.8
MD11G1008600 Malus domestica HOM05D004280 ORTHO05D005059 7.5e-59 231.1 147 76.9
C06p10250 Brassica napus HOM05D004280 ORTHO05D005059 9.8e-59 230.7 177 66.1
THA.LOC104822674 Tarenaya hassleriana HOM05D004280 ORTHO05D005059 9.8e-59 230.7 160 71.9
BolC6t36098H Brassica oleracea HOM05D004280 ORTHO05D005059 1.3e-58 230.3 144 77.1
MD03G1005700 Malus domestica HOM05D004280 ORTHO05D005059 1.7e-58 229.9 147 76.9
Rhsim02G0077200 Rhododendron simsii HOM05D004280 ORTHO05D005059 2.2e-58 229.6 147 77.6
BolC6t36783H Brassica oleracea HOM05D004280 ORTHO05D005059 2.8e-58 229.2 142 77.5
ATR0681G021 Amborella trichopoda HOM05D004280 ORTHO05D005059 3.7e-58 228.8 233 56.2
PGSC0003DMG401025662 Solanum tuberosum HOM05D004280 ORTHO05D005059 4.9e-58 228.4 147 78.2
A06p00280 Brassica napus HOM05D004280 ORTHO05D005059 6.3e-58 228.0 152 72.4
BraA06t23245Z Brassica rapa HOM05D004280 ORTHO05D005059 6.3e-58 228.0 183 65.0
Cc01_g00630 Coffea canephora HOM05D004280 ORTHO05D005059 6.3e-58 228.0 148 77.0
Cc05_g01230 Coffea canephora HOM05D004280 ORTHO05D005059 6.3e-58 228.0 148 77.0
SGA_v2.0_scaffold693G53465 Striga asiatica HOM05D004280 ORTHO05D005059 6.3e-58 228.0 200 67.0
Lsat_1_v5_gn_6_54260 Lactuca sativa HOM05D004280 ORTHO05D005059 8.3e-58 227.6 203 61.1
SGA_v2.0_scaffold329G48825 Striga asiatica HOM05D004280 ORTHO05D005059 8.3e-58 227.6 200 67.0
SGA_v2.0_scaffold552G52891 Striga asiatica HOM05D004280 ORTHO05D005059 8.3e-58 227.6 200 67.0
AagrBONN_evm.TU.Sc2ySwM_344.2640 Anthoceros agrestis HOM05D004280 ORTHO05D005059 1.8e-57 226.5 152 70.4
A05p17570 Brassica napus HOM05D004280 ORTHO05D005059 5.4e-57 224.9 203 60.1
SGA_v2.0_scaffold738G53541 Striga asiatica HOM05D004280 ORTHO05D005059 7.0e-57 224.6 200 66.0
Zm00001eb233380 Zea mays HOM05D004280 ORTHO05D005059 1.2e-56 223.8 199 65.3
HanXRQChr13g0405321 Helianthus annuus HOM05D004280 ORTHO05D005059 4.5e-56 221.9 147 76.9
Mapoly0011s0044 Marchantia polymorpha HOM05D004280 ORTHO05D005059 5.9e-56 221.5 189 61.4
Lalb_Chr08g0230321 Lupinus albus HOM05D004280 ORTHO05D005059 3.8e-55 218.8 159 71.1
AUR62015306 Chenopodium quinoa HOM05D004280 ORTHO05D005059 1.5e-54 216.9 177 64.4
SGA_v2.0_scaffold521G52700 Striga asiatica HOM05D004280 ORTHO05D005059 1.9e-54 216.5 216 62.0
SGA_v2.0_scaffold674G53431 Striga asiatica HOM05D004280 ORTHO05D005059 1.9e-54 216.5 216 62.0
AUR62032745 Chenopodium quinoa HOM05D004280 ORTHO05D005059 5.6e-54 214.9 177 64.4
CBR_g22380 Chara braunii HOM05D004280 ORTHO05D005059 3.6e-53 212.2 163 63.8
Phvul.001G056500 Phaseolus vulgaris HOM05D004280 ORTHO05D005059 8.0e-53 211.1 148 73.0
Zm00001eb059570 Zea mays HOM05D004280 ORTHO05D005059 1.4e-52 210.3 143 74.8
SEGI_04342 Sequoiadendron giganteum HOM05D004280 ORTHO05D005059 6.8e-52 208.0 152 65.1
SGA_v2.0_scaffold674G53436 Striga asiatica HOM05D004280 ORTHO05D005059 1.5e-51 206.8 216 59.7
Pp3c14_18710 Physcomitrium patens HOM05D004280 ORTHO05D005059 1.7e-50 203.4 213 54.0
Os01g0648500 Oryza sativa ssp. japonica HOM05D004280 ORTHO05D005059 2.2e-50 203.0 190 60.0
Oeu059672.2 Olea europaea HOM05D004280 ORTHO05D005059 3.7e-50 202.2 130 77.7
HanXRQChr01g0021661 Helianthus annuus HOM05D004280 ORTHO05D005059 4.9e-50 201.8 123 81.3
Zm00001eb395740 Zea mays HOM05D004280 ORTHO05D005059 6.4e-50 201.4 145 71.0
PGSC0003DMG400009351 Solanum tuberosum HOM05D004280 ORTHO05D005059 4.1e-49 198.7 194 58.2
Pp3c1_41986 Physcomitrium patens HOM05D004280 ORTHO05D005059 9.2e-49 197.6 156 64.1
Nitab4.5_0000131g0050 Nicotiana tabacum HOM05D004280 ORTHO05D005059 1.2e-48 197.2 160 64.4
Sed0016974 Sechium edule HOM05D004280 ORTHO05D005059 2.3e-47 193.0 185 59.5
Cfa009582 Carpinus fangiana HOM05D004280 ORTHO05D005059 3.3e-46 189.1 218 54.1
Zm00001eb068820 Zea mays HOM05D004280 ORTHO05D005059 4.3e-46 188.7 143 70.6
AL1G63340 Arabidopsis lyrata HOM05D004280 ORTHO05D005059 1.6e-45 186.8 153 64.7
SMO146G0138 Selaginella moellendorffii HOM05D004280 ORTHO05D005059 1.1e-44 184.1 154 59.1
SMO169G0010 Selaginella moellendorffii HOM05D004280 ORTHO05D005059 5.8e-43 178.3 148 60.8
SGA_v2.0_scaffold2280G54098 Striga asiatica HOM05D004280 ORTHO05D005059 8.3e-42 174.5 108 81.5
Cc01_g02840 Coffea canephora HOM05D004280 ORTHO05D005059 5.4e-41 171.8 148 63.5
SGA_v2.0_scaffold6G03409 Striga asiatica HOM05D004280 ORTHO05D005059 9.2e-41 171.0 156 60.9
Haze_22967 Corylus avellana HOM05D004280 ORTHO05D005059 7.8e-40 167.9 106 79.2
Cc00_g23960 Coffea canephora HOM05D004280 ORTHO05D005059 5.1e-39 165.2 117 70.1
Nitab4.5_0006954g0010 Nicotiana tabacum HOM05D004280 ORTHO05D005059 3.3e-38 162.5 138 62.3
Actinidia11301 Actinidia chinensis HOM05D004280 ORTHO05D005059 2.9e-34 149.4 89 82.0
Dinv13451 Davidia involucrata HOM05D004280 ORTHO05D005059 1.1e-33 147.5 92 78.3
Glyma.17G202802 Glycine max HOM05D004280 ORTHO05D005059 3.9e-31 139.0 82 81.7
Atru.chr7.1077 Acer truncatum HOM05D004280 ORTHO05D005059 4.0e-28 129.0 116 61.2
AagrBONN_evm.TU.Sc2ySwM_362.2805 Anthoceros agrestis HOM05D004280 ORTHO05D005059 8.9e-28 127.9 96 62.5
Sopen00g013070 Solanum pennellii HOM05D004280 ORTHO05D005059 1.5e-27 127.1 128 55.5
Zm00001eb211560 Zea mays HOM05D004280 ORTHO05D005059 3.4e-27 125.9 153 52.3
Cre01.g011200 Chlamydomonas reinhardtii HOM05D004280 ORTHO05D005059 2.5e-22 109.8 140 40.7
Cc00_g20490 Coffea canephora HOM05D004280 ORTHO05D005059 6.2e-21 105.1 84 65.5
PRCOL_00003189 Prasinoderma coloniale HOM05D004280 ORTHO05D005059 1.4e-17 94.0 182 34.6
Thhalv10012232m.g Eutrema salsugineum HOM05D004280 ORTHO05D005059 1.9e-14 83.6 68 63.2
EL10Ac4g09635 Beta vulgaris HOM05D004280 ORTHO05D005059 9.9e-11 71.2 81 50.6
Cfa024345 Carpinus fangiana HOM05D004280 ORTHO05D122617 7.1e-09 65.1 184 29.9
unitig_26.g9445 Utricularia gibba HOM05D004280 ORTHO05D005059 9.3e-09 64.7 55 61.8
ECA233G4675 Erigeron canadensis HOM05D004280 ORTHO05D003273 3.0e-07 59.7 33 78.8


User provided reference genes

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