Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR102G2811 Punica granatum HOM05D006031 ORTHO05D007417 1.0e-114 416.8 210 100.0
QL02p044744 Quercus lobata HOM05D006031 ORTHO05D007417 1.1e-100 370.2 206 85.9
Eucgr.C03802 Eucalyptus grandis HOM05D006031 ORTHO05D007417 7.7e-99 364.0 208 85.1
CANSAT56G1289 Cannabis sativa HOM05D006031 ORTHO05D007417 8.6e-98 360.5 206 84.0
GSVIVG01015348001 Vitis vinifera HOM05D006031 ORTHO05D007417 8.6e-98 360.5 207 83.1
Atru.chr7.1388 Acer truncatum HOM05D006031 ORTHO05D007417 4.2e-97 358.2 209 83.7
AUR62021455 Chenopodium quinoa HOM05D006031 ORTHO05D007417 5.5e-97 357.8 208 83.7
RcHm_v2.0_Chr2g0091271 Rosa chinensis HOM05D006031 ORTHO05D007417 5.5e-97 357.8 209 83.3
CiPaw.03G228000 Carya illinoinensis HOM05D006031 ORTHO05D007417 2.8e-96 355.5 209 82.8
TWI63G0954 Tripterygium wilfordii HOM05D006031 ORTHO05D007417 2.8e-96 355.5 209 83.3
Dinv41637 Davidia involucrata HOM05D006031 ORTHO05D007417 8.0e-96 354.0 207 81.6
Actinidia20400 Actinidia chinensis HOM05D006031 ORTHO05D007417 1.8e-95 352.8 206 81.6
Lsat_1_v5_gn_4_6541 Lactuca sativa HOM05D006031 ORTHO05D007417 1.8e-95 352.8 209 80.9
Manes.03G024000 Manihot esculenta HOM05D006031 ORTHO05D007417 1.8e-95 352.8 209 82.3
COL.COLO4_34809 Corchorus olitorius HOM05D006031 ORTHO05D007417 2.3e-95 352.4 208 81.2
Hund26230 Selenicereus undatus HOM05D006031 ORTHO05D007417 2.3e-95 352.4 208 81.2
MD02G1057400 Malus domestica HOM05D006031 ORTHO05D007417 4.0e-95 351.7 206 82.5
Sabra18G0072100 Salix brachista HOM05D006031 ORTHO05D007417 8.9e-95 350.5 209 79.4
Migut.K00493 Erythranthe guttata HOM05D006031 ORTHO05D007417 1.2e-94 350.1 206 81.6
Gorai.010G073700 Gossypium raimondii HOM05D006031 ORTHO05D007417 1.5e-94 349.7 209 81.3
FAN23G2797 Fragaria x ananassa HOM05D006031 ORTHO05D007417 2.0e-94 349.4 209 82.3
Thecc.09G105700 Theobroma cacao HOM05D006031 ORTHO05D007417 2.6e-94 349.0 209 79.9
Ciclev10009448m.g Citrus clementina HOM05D006031 ORTHO05D007417 5.7e-94 347.8 210 81.0
Cc06_g10050 Coffea canephora HOM05D006031 ORTHO05D007417 5.7e-94 347.8 210 80.5
Hma1.2p1_0945F.1_g240050 Hydrangea macrophylla HOM05D006031 ORTHO05D007417 5.7e-94 347.8 209 79.4
Cpa.g.sc12.30 Carica papaya HOM05D006031 ORTHO05D007417 7.5e-94 347.4 207 79.7
MELO3C004569.2 Cucumis melo HOM05D006031 ORTHO05D007417 7.5e-94 347.4 206 81.1
FvH4_1g05640 Fragaria vesca HOM05D006031 ORTHO05D007417 7.5e-94 347.4 209 82.3
Gohir.A06G064600 Gossypium hirsutum HOM05D006031 ORTHO05D007417 7.5e-94 347.4 209 80.9
PSO566G0179 Papaver somniferum HOM05D006031 ORTHO05D007417 1.3e-93 346.7 209 80.9
FAN26G3395 Fragaria x ananassa HOM05D006031 ORTHO05D007417 2.2e-93 345.9 209 81.3
HanXRQChr17g0570151 Helianthus annuus HOM05D006031 ORTHO05D007417 2.2e-93 345.9 209 79.9
Gohir.D06G063200 Gossypium hirsutum HOM05D006031 ORTHO05D007417 2.8e-93 345.5 209 80.4
Potri.018G083800 Populus trichocarpa HOM05D006031 ORTHO05D007417 2.8e-93 345.5 209 78.0
C07p56460 Brassica napus HOM05D006031 ORTHO05D007417 3.7e-93 345.1 207 78.7
BolC7t46125H Brassica oleracea HOM05D006031 ORTHO05D007417 3.7e-93 345.1 207 78.7
ECA234G3380 Erigeron canadensis HOM05D006031 ORTHO05D007417 3.7e-93 345.1 205 80.5
FAN26G0948 Fragaria x ananassa HOM05D006031 ORTHO05D007417 3.7e-93 345.1 209 81.3
MBI04_g14932_MAGBIO Magnolia biondii HOM05D006031 ORTHO05D007417 3.7e-93 345.1 205 80.0
BcaC09g51657 Brassica carinata HOM05D006031 ORTHO05D007417 4.9e-93 344.7 207 79.2
BcaNung01361 Brassica carinata HOM05D006031 ORTHO05D007417 4.9e-93 344.7 207 78.7
BolC1t01025H Brassica oleracea HOM05D006031 ORTHO05D007417 4.9e-93 344.7 207 79.2
Nitab4.5_0000952g0030 Nicotiana tabacum HOM05D006031 ORTHO05D007417 4.9e-93 344.7 209 78.0
PSO782G0755 Papaver somniferum HOM05D006031 ORTHO05D007417 4.9e-93 344.7 209 80.4
Sc18g0001360 Simmondsia chinensis HOM05D006031 ORTHO05D007417 4.9e-93 344.7 205 80.5
Aa31LG2G21560 Aethionema arabicum HOM05D006031 ORTHO05D007417 6.3e-93 344.4 206 79.1
EL10Ac8g18430 Beta vulgaris HOM05D006031 ORTHO05D007417 8.3e-93 344.0 208 80.3
BraA01t00856Z Brassica rapa HOM05D006031 ORTHO05D007417 1.1e-92 343.6 207 78.7
AL7G23660 Arabidopsis lyrata HOM05D006031 ORTHO05D007417 1.4e-92 343.2 208 78.4
A03p58440 Brassica napus HOM05D006031 ORTHO05D007417 1.4e-92 343.2 207 78.7
Solyc12g006030.2 Solanum lycopersicum HOM05D006031 ORTHO05D007417 1.4e-92 343.2 209 78.5
TAR624G0502 Trochodendron aralioides HOM05D006031 ORTHO05D007417 1.4e-92 343.2 205 80.5
CAN.G478.5 Capsicum annuum HOM05D006031 ORTHO05D007417 2.4e-92 342.4 209 78.0
Ca_25548_v3 Cicer arietinum L. HOM05D006031 ORTHO05D007417 2.4e-92 342.4 209 79.4
AT4G28830 Arabidopsis thaliana HOM05D006031 ORTHO05D007417 3.2e-92 342.0 207 77.8
C01p10630 Brassica napus HOM05D006031 ORTHO05D007417 3.2e-92 342.0 207 78.7
BraA03t14904Z Brassica rapa HOM05D006031 ORTHO05D007417 3.2e-92 342.0 207 78.3
Glyma.01G145300 Glycine max HOM05D006031 ORTHO05D007417 3.2e-92 342.0 205 80.0
Sopen12g002000 Solanum pennellii HOM05D006031 ORTHO05D007417 3.2e-92 342.0 209 78.5
CsaV3_2G002120 Cucumis sativus L. HOM05D006031 ORTHO05D007417 4.1e-92 341.7 206 79.6
Lalb_Chr22g0352651 Lupinus albus HOM05D006031 ORTHO05D007417 4.1e-92 341.7 209 78.5
Nn2g11655 Nelumbo nucifera HOM05D006031 ORTHO05D007417 4.1e-92 341.7 205 80.5
Sp7g26830 Schrenkiella parvula HOM05D006031 ORTHO05D007417 4.1e-92 341.7 207 78.7
AUR62010942 Chenopodium quinoa HOM05D006031 ORTHO05D007417 5.4e-92 341.3 208 81.2
Carub.0007s1181 Capsella rubella HOM05D006031 ORTHO05D007417 7.0e-92 340.9 207 78.3
Nitab4.5_0000010g0020 Nicotiana tabacum HOM05D006031 ORTHO05D007417 1.2e-91 340.1 209 77.0
Phvul.004G168000 Phaseolus vulgaris HOM05D006031 ORTHO05D007417 1.6e-91 339.7 209 78.0
Thhalv10026253m.g Eutrema salsugineum HOM05D006031 ORTHO05D007417 2.0e-91 339.3 203 80.3
arahy.Tifrunner.gnm1.ann1.P4D2XC Arachis hypogaea HOM05D006031 ORTHO05D007417 2.7e-91 339.0 209 77.5
A01p09080 Brassica napus HOM05D006031 ORTHO05D007417 2.7e-91 339.0 207 77.3
arahy.Tifrunner.gnm1.ann1.4UU729 Arachis hypogaea HOM05D006031 ORTHO05D007417 4.5e-91 338.2 209 77.0
BcaC06g32602 Brassica carinata HOM05D006031 ORTHO05D007417 4.5e-91 338.2 206 77.7
TPR.G34905 Trifolium pratense HOM05D006031 ORTHO05D007417 4.5e-91 338.2 209 78.5
Aqoxy7G01527 Aquilegia oxysepala HOM05D006031 ORTHO05D007417 5.9e-91 337.8 209 77.0
Medtr1g035260 Medicago truncatula HOM05D006031 ORTHO05D007417 1.7e-90 336.3 209 78.0
VMungo0464G0135 Vigna mungo HOM05D006031 ORTHO05D007417 2.9e-90 335.5 209 76.6
SalBow3G0984 Salvia bowleyana HOM05D006031 ORTHO05D007417 3.9e-90 335.1 211 77.3
CSS0004856 Camellia sinensis var. sinensis HOM05D006031 ORTHO05D007417 6.6e-90 334.3 210 77.1
Peaxi162Scf00539g00717 Petunia axillaris HOM05D006031 ORTHO05D007417 1.5e-89 333.2 209 77.0
THA.LOC104804018 Tarenaya hassleriana HOM05D006031 ORTHO05D007417 2.5e-89 332.4 205 78.0
ClCG11G002340 Citrullus lanatus HOM05D006031 ORTHO05D007417 4.3e-89 331.6 227 71.4
HPP92_005270 Vanilla planifolia HOM05D006031 ORTHO05D007417 2.3e-87 325.9 210 74.3
Actinidia09434 Actinidia chinensis HOM05D006031 ORTHO05D007417 5.2e-87 324.7 209 75.6
Ah.09g230920 Amaranthus hybridus HOM05D006031 ORTHO05D007417 3.4e-86 322.0 189 83.1
ATR0315G117 Amborella trichopoda HOM05D006031 ORTHO05D007417 7.5e-86 320.9 205 74.6
CDE02G2180 Ceratophyllum demersum HOM05D006031 ORTHO05D007417 9.8e-86 320.5 215 73.5
Os06g0162600 Oryza sativa ssp. japonica HOM05D006031 ORTHO05D007417 2.9e-85 318.9 206 73.3
Mapoly0136s0020 Marchantia polymorpha HOM05D006031 ORTHO05D007417 2.4e-84 315.8 203 73.4
Zm00001eb271370 Zea mays HOM05D006031 ORTHO05D007417 2.7e-83 312.4 205 73.7
vmacro10877 Vaccinium macrocarpon HOM05D006031 ORTHO05D007417 6.0e-83 311.2 209 73.2
Cfa003225 Carpinus fangiana HOM05D006031 ORTHO05D007417 5.6e-81 304.7 209 74.6
Prupe.7G225500 Prunus persica HOM05D006031 ORTHO05D007417 9.5e-81 303.9 180 81.7
AagrBONN_evm.TU.Sc2ySwM_228.3645 Anthoceros agrestis HOM05D006031 ORTHO05D007417 1.6e-80 303.1 203 70.4
unitig_62.g23476 Utricularia gibba HOM05D006031 ORTHO05D007417 2.8e-80 302.4 214 71.0
Duzib150G0325 Durio zibethinus HOM05D006031 ORTHO05D007417 4.7e-80 301.6 209 72.7
SGA_v2.0_scaffold387G50523 Striga asiatica HOM05D006031 ORTHO05D007417 1.2e-78 297.0 212 66.5
Pp3c6_12910 Physcomitrium patens HOM05D006031 ORTHO05D007417 3.7e-77 292.0 203 69.5
CARHR236620 Cardamine hirsuta HOM05D006031 ORTHO05D007417 5.4e-76 288.1 207 68.1
SMO304G0145 Selaginella moellendorffii HOM05D006031 ORTHO05D007417 7.8e-75 284.3 203 66.5
SMO164G0018 Selaginella moellendorffii HOM05D006031 ORTHO05D007417 5.1e-74 281.6 203 66.0
Dinv41633 Davidia involucrata HOM05D006031 ORTHO05D007417 5.6e-73 278.1 168 78.6
ClCG06G015420 Citrullus lanatus HOM05D006031 ORTHO05D007417 7.3e-73 277.7 170 77.1
Hma1.2p1_0945F.1_g240060 Hydrangea macrophylla HOM05D006031 ORTHO05D007417 1.4e-71 273.5 166 77.1
Haze_25783 Corylus avellana HOM05D006031 ORTHO05D007417 1.8e-71 273.1 190 73.2
Rhsim05G0043800 Rhododendron simsii HOM05D006031 ORTHO05D000070 1.3e-66 256.9 253 54.2
Lj2g0026722 Lotus japonicus HOM05D006031 ORTHO05D007417 2.3e-66 256.1 157 79.6
MSTRG.26365 Avicennia marina HOM05D006031 ORTHO05D007417 1.1e-65 253.8 159 78.6
Psat1g044640 Pisum sativum HOM05D006031 ORTHO05D007417 3.6e-64 248.8 157 77.1
PGSC0003DMG400013889 Solanum tuberosum HOM05D000011 ORTHO05D007417 8.4e-61 237.7 193 62.7
Cre08.g384700 Chlamydomonas reinhardtii HOM05D006031 ORTHO05D007417 2.4e-55 219.5 217 51.2
Sed0012983 Sechium edule HOM05D006031 ORTHO05D007417 5.8e-54 214.9 134 74.6
CBR_g49195 Chara braunii HOM05D005459 ORTHO05D006751 2.7e-51 206.1 183 54.6
PRCOL_00003743 Prasinoderma coloniale HOM05D006031 ORTHO05D007417 6.6e-50 201.4 208 49.0
arahy.Tifrunner.gnm1.ann1.PEIA6U Arachis hypogaea HOM05D006031 ORTHO05D007417 6.2e-48 194.9 157 63.7
DCAR_012059 Daucus carota HOM05D006031 ORTHO05D007417 3.4e-46 189.1 142 67.6
MCO05G480 Micromonas commoda HOM05D006031 ORTHO05D007417 1.4e-44 183.7 210 50.0
Zm00001eb271350 Zea mays HOM05D006031 ORTHO05D007417 7.1e-44 181.4 123 70.7
Zm00001eb442390 Zea mays HOM05D006031 ORTHO05D007417 7.1e-44 181.4 123 70.7
Lj4A429T15 Lonicera japonica HOM05D006031 ORTHO05D007417 4.3e-41 172.2 95 87.4
Haze_26211 Corylus avellana HOM05D006031 ORTHO05D007417 3.2e-36 156.0 230 38.7
Haze_27462 Corylus avellana HOM05D006031 ORTHO05D007417 3.2e-36 156.0 230 38.7
PRCOL_00005480 Prasinoderma coloniale HOM05D006031 ORTHO05D007417 1.1e-25 120.9 194 37.1
Lsat_1_v5_gn_8_38160 Lactuca sativa HOM05D006031 ORTHO05D007417 6.9e-23 111.7 104 55.8
BcaC09g51665 Brassica carinata HOM05D006031 ORTHO05D007417 5.5e-20 102.1 88 58.0
AUR62033208 Chenopodium quinoa HOM05D003603 ORTHO05D004186 2.1e-19 100.1 53 90.6
AUR62044225 Chenopodium quinoa HOM05D003603 ORTHO05D004186 2.1e-19 100.1 52 92.3
SEGI_07643 Sequoiadendron giganteum HOM05D006031 ORTHO05D007417 2.1e-19 100.1 71 63.4
Zm00001eb271390 Zea mays HOM05D006031 ORTHO05D007417 2.8e-16 89.7 53 81.1
SEGI_21752 Sequoiadendron giganteum HOM05D006031 ORTHO05D007417 3.1e-15 86.3 57 64.9
Glyma.09G193200 Glycine max HOM05D006031 ORTHO05D007417 4.5e-14 82.4 72 58.3
VMungo0464G0776 Vigna mungo HOM05D000002 ORTHO05D000001 3.8e-13 79.3 65 63.1
Lj4C429T0 Lonicera japonica HOM05D002180 ORTHO05D001339 8.8e-10 68.2 47 74.5
MBI06_g04307_MAGBIO Magnolia biondii HOM05D006031 ORTHO05D007417 1.1e-09 67.8 134 40.3
Thhalv10002738m.g Eutrema salsugineum HOM05D006031 ORTHO05D007417 2.6e-09 66.6 39 79.5
Medtr6g087210 Medicago truncatula HOM05D006031 ORTHO05D007417 1.3e-08 64.3 50 62.0
COL.COLO4_34793 Corchorus olitorius HOM05D006031 ORTHO05D007417 9.1e-07 58.2 33 78.8
arahy.Tifrunner.gnm1.ann1.43H8SX Arachis hypogaea HOM05D000371 ORTHO05D013217 1.5e-06 57.4 53 50.9


User provided reference genes

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