Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR102G2803 Punica granatum HOM05D005946 ORTHO05D007340 5.0e-34 147.1 71 100.0
Duzib251G0400 Durio zibethinus HOM05D005946 ORTHO05D007340 5.2e-31 137.1 71 88.7
Gohir.A03G127300 Gossypium hirsutum HOM05D005946 ORTHO05D007340 5.2e-31 137.1 71 88.7
Gorai.005G169000 Gossypium raimondii HOM05D005946 ORTHO05D007340 5.2e-31 137.1 71 88.7
Sed0027475 Sechium edule HOM05D005946 ORTHO05D007340 5.2e-31 137.1 71 88.7
Thecc.02G276900 Theobroma cacao HOM05D005946 ORTHO05D007340 5.2e-31 137.1 71 88.7
Duzib248G1204 Durio zibethinus HOM05D005946 ORTHO05D007340 6.8e-31 136.7 71 88.7
Ciclev10033263m.g Citrus clementina HOM05D005946 ORTHO05D007340 1.2e-30 136.0 71 87.3
TWI14G1045 Tripterygium wilfordii HOM05D005946 ORTHO05D007340 1.5e-30 135.6 71 88.7
PGR004G0564 Punica granatum HOM05D005946 ORTHO05D007340 2.0e-30 135.2 71 87.3
Cc00_g13530 Coffea canephora HOM05D005946 ORTHO05D007340 2.6e-30 134.8 71 87.3
Manes.12G013300 Manihot esculenta HOM05D005946 ORTHO05D007340 2.6e-30 134.8 71 87.3
Manes.13G017850 Manihot esculenta HOM05D005946 ORTHO05D007340 2.6e-30 134.8 71 87.3
Dinv14819 Davidia involucrata HOM05D005946 ORTHO05D007340 3.4e-30 134.4 71 85.9
TWI36G1309 Tripterygium wilfordii HOM05D005946 ORTHO05D007340 3.4e-30 134.4 71 87.3
Gohir.D02G150700 Gossypium hirsutum HOM05D005946 ORTHO05D007340 4.4e-30 134.0 71 87.3
EL10Ac6g13474 Beta vulgaris HOM05D005946 ORTHO05D007340 5.8e-30 133.7 71 85.9
Eucgr.B03471 Eucalyptus grandis HOM05D005946 ORTHO05D007340 5.8e-30 133.7 71 87.3
Rhsim12G0028200 Rhododendron simsii HOM05D005946 ORTHO05D007340 5.8e-30 133.7 71 85.9
Gorai.002G192200 Gossypium raimondii HOM05D005946 ORTHO05D007340 7.5e-30 133.3 71 85.9
Solyc06g068780.3 Solanum lycopersicum HOM05D005946 ORTHO05D007340 7.5e-30 133.3 71 85.9
Sopen06g026060 Solanum pennellii HOM05D005946 ORTHO05D007340 7.5e-30 133.3 71 85.9
PGSC0003DMG400025576 Solanum tuberosum HOM05D005946 ORTHO05D007340 7.5e-30 133.3 71 85.9
TWI36G1530 Tripterygium wilfordii HOM05D005946 ORTHO05D007340 7.5e-30 133.3 71 85.9
Potri.008G176801 Populus trichocarpa HOM05D005946 ORTHO05D007340 9.8e-30 132.9 71 85.9
Potri.010G058300 Populus trichocarpa HOM05D005946 ORTHO05D007340 9.8e-30 132.9 71 85.9
CANSAT21G2474 Cannabis sativa HOM05D005946 ORTHO05D007340 1.7e-29 132.1 71 85.9
CiPaw.06G100600 Carya illinoinensis HOM05D005946 ORTHO05D007340 1.7e-29 132.1 71 84.5
TPR.G21803 Trifolium pratense HOM05D005946 ORTHO05D007340 1.7e-29 132.1 71 84.5
Nitab4.5_0001841g0040 Nicotiana tabacum HOM05D005946 ORTHO05D007340 2.2e-29 131.7 70 85.7
Phvul.001G260400 Phaseolus vulgaris HOM05D005946 ORTHO05D007340 2.2e-29 131.7 71 84.5
Rhsim07G0080600 Rhododendron simsii HOM05D005946 ORTHO05D007340 2.2e-29 131.7 71 84.5
Migut.N01429 Erythranthe guttata HOM05D005946 ORTHO05D007340 2.9e-29 131.3 71 84.5
ECA246G0405 Erigeron canadensis HOM05D005946 ORTHO05D007340 3.7e-29 131.0 71 84.5
HanXRQChr17g0534681 Helianthus annuus HOM05D005946 ORTHO05D007340 3.7e-29 131.0 71 84.5
Lsat_1_v5_gn_6_8840 Lactuca sativa HOM05D005946 ORTHO05D007340 3.7e-29 131.0 71 84.5
CARHR192660 Cardamine hirsuta HOM05D005946 ORTHO05D007340 4.9e-29 130.6 71 84.5
CiPaw.05G112200 Carya illinoinensis HOM05D005946 ORTHO05D007340 4.9e-29 130.6 71 84.5
Thhalv10015210m.g Eutrema salsugineum HOM05D005946 ORTHO05D007340 4.9e-29 130.6 71 84.5
Medtr3g085600 Medicago truncatula HOM05D005946 ORTHO05D007340 4.9e-29 130.6 71 83.1
Sp6g24240 Schrenkiella parvula HOM05D005946 ORTHO05D007340 4.9e-29 130.6 71 84.5
THA.LOC109116592 Tarenaya hassleriana HOM05D005946 ORTHO05D007340 4.9e-29 130.6 71 84.5
arahy.Tifrunner.gnm1.ann1.55451G Arachis hypogaea HOM05D005946 ORTHO05D007340 6.4e-29 130.2 70 82.9
CSS0024427 Camellia sinensis var. sinensis HOM05D005946 ORTHO05D007340 6.4e-29 130.2 71 83.1
Glyma.11G249100 Glycine max HOM05D005946 ORTHO05D007340 6.4e-29 130.2 71 83.1
Nitab4.5_0008858g0060 Nicotiana tabacum HOM05D005946 ORTHO05D007340 6.4e-29 130.2 70 84.3
A03p09890 Brassica napus HOM05D005946 ORTHO05D007340 8.3e-29 129.8 71 84.5
CAN.G1089.18 Capsicum annuum HOM05D005946 ORTHO05D007340 8.3e-29 129.8 70 84.3
Lsat_1_v5_gn_3_12801 Lactuca sativa HOM05D005946 ORTHO05D007340 8.3e-29 129.8 71 84.5
Nn3g18946 Nelumbo nucifera HOM05D005946 ORTHO05D007340 8.3e-29 129.8 69 85.5
PSO063G0123 Papaver somniferum HOM05D005946 ORTHO05D007340 8.3e-29 129.8 71 84.5
PSO170G6765 Papaver somniferum HOM05D005946 ORTHO05D007340 8.3e-29 129.8 71 84.5
SalBow5G0243 Salvia bowleyana HOM05D005946 ORTHO05D007340 8.3e-29 129.8 71 83.1
SalBow5G1014 Salvia bowleyana HOM05D005946 ORTHO05D007340 8.3e-29 129.8 71 83.1
MBI07_g24770_MAGBIO Magnolia biondii HOM05D005946 ORTHO05D007340 1.1e-28 129.4 71 83.1
Solyc03g118140.3 Solanum lycopersicum HOM05D005946 ORTHO05D007340 1.1e-28 129.4 71 84.5
Sopen03g037060 Solanum pennellii HOM05D005946 ORTHO05D007340 1.1e-28 129.4 71 84.5
vmacro01071 Vaccinium macrocarpon HOM05D005946 ORTHO05D007340 1.1e-28 129.4 71 84.5
AL6G31720 Arabidopsis lyrata HOM05D005946 ORTHO05D007340 1.4e-28 129.0 71 83.1
AT5G20165 Arabidopsis thaliana HOM05D005946 ORTHO05D007340 1.4e-28 129.0 71 83.1
Carub.0006s1856 Capsella rubella HOM05D005946 ORTHO05D007340 1.4e-28 129.0 71 83.1
CDE10G0705 Ceratophyllum demersum HOM05D005946 ORTHO05D007340 1.4e-28 129.0 71 81.7
HanXRQChr07g0190741 Helianthus annuus HOM05D005946 ORTHO05D007340 1.4e-28 129.0 71 83.1
Lj4g0023384 Lotus japonicus HOM05D005946 ORTHO05D007340 1.4e-28 129.0 71 83.1
SalBow3G2240 Salvia bowleyana HOM05D005946 ORTHO05D007340 1.4e-28 129.0 71 84.5
TAR374G1140 Trochodendron aralioides HOM05D005946 ORTHO05D007340 1.9e-28 128.6 71 83.1
A10p19740 Brassica napus HOM05D005946 ORTHO05D007340 2.4e-28 128.3 70 84.3
C09p56030 Brassica napus HOM05D005946 ORTHO05D007340 2.4e-28 128.3 70 84.3
BolC3t13619H Brassica oleracea HOM05D005946 ORTHO05D007340 2.4e-28 128.3 70 84.3
BolC9t58470H Brassica oleracea HOM05D005946 ORTHO05D007340 2.4e-28 128.3 70 84.3
BraA03t10302Z Brassica rapa HOM05D005946 ORTHO05D007340 2.4e-28 128.3 70 84.3
BraA10t44050Z Brassica rapa HOM05D005946 ORTHO05D007340 2.4e-28 128.3 70 84.3
Migut.B01726 Erythranthe guttata HOM05D005946 ORTHO05D007340 2.4e-28 128.3 71 81.7
CAN.G843.5 Capsicum annuum HOM05D005946 ORTHO05D007340 3.2e-28 127.9 70 84.3
MSTRG.28215 Avicennia marina HOM05D005946 ORTHO05D007340 4.1e-28 127.5 71 81.7
Aa31LG10G8610 Aethionema arabicum HOM05D005946 ORTHO05D007340 5.4e-28 127.1 71 81.7
Actinidia27305 Actinidia chinensis HOM05D005946 ORTHO05D007340 7.0e-28 126.7 71 80.3
MD14G1133000 Malus domestica HOM05D005946 ORTHO05D007340 7.0e-28 126.7 71 80.3
Os05g0251500 Oryza sativa ssp. japonica HOM05D005946 ORTHO05D007340 2.0e-27 125.2 71 80.3
Prupe.5G124600 Prunus persica HOM05D005946 ORTHO05D007340 2.0e-27 125.2 71 77.5
Lalb_Chr05g0223941 Lupinus albus HOM05D005946 ORTHO05D007340 2.7e-27 124.8 71 78.9
Lalb_Chr09g0332191 Lupinus albus HOM05D005946 ORTHO05D007340 4.6e-27 124.0 71 80.3
MD06G1111800 Malus domestica HOM05D005946 ORTHO05D007340 1.0e-26 122.9 71 77.5
unitig_747.g21988 Utricularia gibba HOM05D005946 ORTHO05D007340 1.0e-26 122.9 71 80.3
Os02g0299600 Oryza sativa ssp. japonica HOM05D005946 ORTHO05D007340 1.3e-26 122.5 71 77.5
FvH4_5g11580 Fragaria vesca HOM05D005946 ORTHO05D007340 3.0e-26 121.3 71 77.5
Psat7g023880 Pisum sativum HOM05D005946 ORTHO05D007340 5.0e-26 120.6 71 80.3
Zm00001eb237180 Zea mays HOM05D005946 ORTHO05D007340 8.6e-26 119.8 70 75.7
SEGI_28367 Sequoiadendron giganteum HOM05D005946 ORTHO05D007340 1.1e-25 119.4 71 74.6
CDE10G0420 Ceratophyllum demersum HOM05D005946 ORTHO05D007340 1.5e-25 119.0 63 84.1
THA.LOC104799646 Tarenaya hassleriana HOM05D005946 ORTHO05D007340 1.5e-25 119.0 90 66.7
arahy.Tifrunner.gnm1.ann1.XCNA8V Arachis hypogaea HOM05D005946 ORTHO05D007340 2.8e-24 114.8 99 58.6
vmacro14062 Vaccinium macrocarpon HOM05D005946 ORTHO05D007340 2.8e-24 114.8 62 82.3
Mapoly0008s0042 Marchantia polymorpha HOM05D005946 ORTHO05D007340 1.1e-23 112.8 71 71.8
RcHm_v2.0_Chr4g0430651 Rosa chinensis HOM05D005946 ORTHO05D007340 1.4e-23 112.5 69 71.0
Pp3s128_20 Physcomitrium patens HOM05D005946 ORTHO05D007340 1.8e-23 112.1 71 74.6
AagrBONN_evm.TU.Sc2ySwM_228.3656 Anthoceros agrestis HOM05D005946 ORTHO05D007340 4.0e-23 110.9 71 70.4
unitig_0.g1509 Utricularia gibba HOM05D005946 ORTHO05D007340 6.8e-23 110.2 71 74.6
FvH4_4g23990 Fragaria vesca HOM05D005946 ORTHO05D007340 1.3e-21 105.9 69 68.1
Cre07.g325735 Chlamydomonas reinhardtii HOM05D005946 ORTHO05D007340 3.5e-19 97.8 71 60.6
Sabra08G0134600 Salix brachista HOM05D005946 ORTHO05D007340 1.7e-18 95.5 145 42.1
C03p11470 Brassica napus HOM05D005946 ORTHO05D007340 1.1e-17 92.8 56 76.8
Peaxi162Scf00314g00635 Petunia axillaris HOM05D005946 ORTHO05D007340 3.3e-17 91.3 50 84.0
Actinidia22739 Actinidia chinensis HOM05D005946 ORTHO05D007340 5.6e-17 90.5 58 74.1
CsaV3_6G032330 Cucumis sativus L. HOM05D003413 ORTHO05D004197 5.6e-17 90.5 53 77.4
Glyma.18G008200 Glycine max HOM05D005946 ORTHO05D007340 5.6e-17 90.5 49 83.7
SGA_v2.0_scaffold11G05656 Striga asiatica HOM05D000612 ORTHO05D000461 1.2e-16 89.4 49 83.7
Nn1g00299 Nelumbo nucifera HOM05D005946 ORTHO05D007340 1.6e-16 89.0 44 84.1
MELO3C030289.2 Cucumis melo HOM05D005946 ORTHO05D007340 2.8e-16 88.2 48 83.3
TPR.G37229 Trifolium pratense HOM05D005946 ORTHO05D007340 6.8e-15 83.6 51 74.5
Dinv16088 Davidia involucrata HOM05D005946 ORTHO05D007340 2.6e-14 81.6 48 81.2
Sed0005468 Sechium edule HOM05D005946 ORTHO05D007340 1.7e-13 79.0 69 59.4
HPP92_000512 Vanilla planifolia HOM05D005946 ORTHO05D007340 1.7e-13 79.0 38 86.8
MCO08G327 Micromonas commoda HOM05D005946 ORTHO05D007340 6.4e-13 77.0 62 58.1
FAN07G2898 Fragaria x ananassa HOM05D005946 ORTHO05D007340 2.4e-12 75.1 62 56.5
PRCOL_00003875 Prasinoderma coloniale HOM05D005946 ORTHO05D007340 2.4e-12 75.1 71 47.9
ATR0955G005 Amborella trichopoda HOM05D005946 ORTHO05D007340 7.1e-12 73.6 47 70.2
RcHm_v2.0_Chr5g0020411 Rosa chinensis HOM05D005946 ORTHO05D007340 7.1e-12 73.6 69 50.7
FAN17G0158 Fragaria x ananassa HOM05D005946 ORTHO05D007340 2.1e-11 72.0 53 62.3
FAN12G4044 Fragaria x ananassa HOM05D005946 ORTHO05D007340 6.0e-11 70.5 48 66.7
Nitab4.5_0005774g0040 Nicotiana tabacum HOM05D005946 ORTHO05D007340 7.8e-11 70.1 34 88.2
SHI17703 Sapria himalayana HOM05D005946 ORTHO05D007340 1.0e-10 69.7 38 84.2
FvH4_3g12470 Fragaria vesca HOM05D005946 ORTHO05D045642 3.0e-10 68.2 65 50.8
Psat5g094720 Pisum sativum HOM05D005946 ORTHO05D007340 3.0e-10 68.2 47 68.1
arahy.Tifrunner.gnm1.ann1.K0QS2G Arachis hypogaea HOM05D005946 ORTHO05D007340 1.5e-09 65.9 43 69.8
ClCG08G010140 Citrullus lanatus HOM05D005946 ORTHO05D007340 1.9e-09 65.5 37 78.4
Sabra10G0047000 Salix brachista HOM05D005946 ORTHO05D007340 2.5e-09 65.1 43 72.1
Peaxi162Scf00207g00238 Petunia axillaris HOM05D005946 ORTHO05D007340 4.3e-09 64.3 37 78.4
RcHm_v2.0_Chr7g0186171 Rosa chinensis HOM05D005946 ORTHO05D007340 1.1e-07 59.7 37 73.0
FAN04G2943 Fragaria x ananassa HOM05D005946 ORTHO05D007340 3.1e-07 58.2 36 72.2
FAN08G3074 Fragaria x ananassa HOM05D005946 ORTHO05D007340 3.1e-07 58.2 36 72.2
FAN18G3129 Fragaria x ananassa HOM05D005946 ORTHO05D007340 3.1e-07 58.2 36 72.2


User provided reference genes

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