Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR102G2770 Punica granatum HOM05D004137 ORTHO05D004804 3.3e-50 201.4 104 100.0
THA.LOC104810322 Tarenaya hassleriana HOM05D004137 ORTHO05D004804 7.7e-15 84.0 68 54.4
Manes.15G109500 Manihot esculenta HOM05D004137 ORTHO05D004804 1.1e-13 80.1 112 50.0
Manes.03G087303 Manihot esculenta HOM05D004137 ORTHO05D004804 1.4e-13 79.7 68 55.9
Nn7g35858 Nelumbo nucifera HOM05D004137 ORTHO05D004804 1.9e-13 79.3 101 42.6
Atru.chr3.2107 Acer truncatum HOM05D004137 ORTHO05D004804 3.2e-13 78.6 68 47.1
Potri.001G003500 Populus trichocarpa HOM05D004137 ORTHO05D004804 3.2e-13 78.6 75 54.7
QL01p003617 Quercus lobata HOM05D004137 ORTHO05D004804 3.2e-13 78.6 68 57.4
Cpa.g.c44905 Carica papaya HOM05D004137 ORTHO05D004804 4.2e-13 78.2 61 62.3
ATR0737G017 Amborella trichopoda HOM05D004137 ORTHO05D004804 5.5e-13 77.8 76 53.9
Nn2g15861 Nelumbo nucifera HOM05D004137 ORTHO05D004804 5.5e-13 77.8 68 52.9
FAN16G1350 Fragaria x ananassa HOM05D004137 ORTHO05D004804 7.2e-13 77.4 76 55.3
TWI60G1175 Tripterygium wilfordii HOM05D004137 ORTHO05D004804 7.2e-13 77.4 67 52.2
MD11G1003200 Malus domestica HOM05D004137 ORTHO05D004804 9.4e-13 77.0 104 50.0
TAR623G1005 Trochodendron aralioides HOM05D004137 ORTHO05D004804 9.4e-13 77.0 68 52.9
RcHm_v2.0_Chr5g0083831 Rosa chinensis HOM05D004137 ORTHO05D004804 1.6e-12 76.3 76 53.9
Haze_22939 Corylus avellana HOM05D004137 ORTHO05D004804 2.1e-12 75.9 70 54.3
FAN21G2465 Fragaria x ananassa HOM05D004137 ORTHO05D004804 2.1e-12 75.9 68 55.9
Prupe.6G003100 Prunus persica HOM05D004137 ORTHO05D004804 2.1e-12 75.9 104 47.1
TWI34G1879 Tripterygium wilfordii HOM05D004137 ORTHO05D004804 2.1e-12 75.9 67 52.2
FAN25G2990 Fragaria x ananassa HOM05D004137 ORTHO05D004804 4.6e-12 74.7 68 55.9
Potri.013G057832 Populus trichocarpa HOM05D004137 ORTHO05D004804 1.4e-11 73.2 81 49.4
Potri.003G221500 Populus trichocarpa HOM05D004137 ORTHO05D004804 3.0e-11 72.0 70 50.0
BcaB04g16959 Brassica carinata HOM05D004137 ORTHO05D004804 8.8e-11 70.5 68 41.2
Carub.0001s4388 Capsella rubella HOM05D004137 ORTHO05D004804 8.8e-11 70.5 76 42.1
Hma1.2p1_0241F.1_g100550 Hydrangea macrophylla HOM05D004137 ORTHO05D004804 8.8e-11 70.5 76 42.1
Ciclev10017215m.g Citrus clementina HOM05D004137 ORTHO05D004804 1.1e-10 70.1 65 52.3
THA.LOC104811721 Tarenaya hassleriana HOM05D004137 ORTHO05D004804 1.5e-10 69.7 94 39.4
AL1G63420 Arabidopsis lyrata HOM05D004137 ORTHO05D004804 3.3e-10 68.6 68 41.2
AT1G55365 Arabidopsis thaliana HOM05D004137 ORTHO05D004804 3.3e-10 68.6 68 39.7
BcaC08g44196 Brassica carinata HOM05D004137 ORTHO05D004804 3.3e-10 68.6 68 41.2
BolC6t36802H Brassica oleracea HOM05D004137 ORTHO05D004804 3.3e-10 68.6 68 41.2
CSS0017288 Camellia sinensis var. sinensis HOM05D004137 ORTHO05D004804 4.3e-10 68.2 70 50.0
CANSAT11G0501 Cannabis sativa HOM05D004137 ORTHO05D004804 4.3e-10 68.2 104 46.2
Eucgr.B03601 Eucalyptus grandis HOM05D004137 ORTHO05D004804 4.3e-10 68.2 65 49.2
Migut.J01885 Erythranthe guttata HOM05D004137 ORTHO05D004804 7.4e-10 67.4 73 46.6
CiPaw.13G177400 Carya illinoinensis HOM05D004137 ORTHO05D004804 9.7e-10 67.0 73 49.3
Thhalv10011858m.g Eutrema salsugineum HOM05D004137 ORTHO05D004804 9.7e-10 67.0 68 41.2
Potri.013G057766 Populus trichocarpa HOM05D004137 ORTHO05D004804 9.7e-10 67.0 78 47.4
BcaC08g43620 Brassica carinata HOM05D004137 ORTHO05D004804 1.3e-09 66.6 68 41.2
A06p00220 Brassica napus HOM05D004137 ORTHO05D004804 1.3e-09 66.6 68 41.2
C06p10340 Brassica napus HOM05D004137 ORTHO05D004804 1.3e-09 66.6 68 41.2
BolC6t36110H Brassica oleracea HOM05D004137 ORTHO05D004804 1.3e-09 66.6 68 41.2
BraA06t23238Z Brassica rapa HOM05D004137 ORTHO05D004804 1.3e-09 66.6 68 41.2
Manes.09G141000 Manihot esculenta HOM05D004137 ORTHO05D004804 1.3e-09 66.6 76 43.4
DCAR_023854 Daucus carota HOM05D004137 ORTHO05D004804 2.2e-09 65.9 78 46.2
Nitab4.5_0000528g0100 Nicotiana tabacum HOM05D004137 ORTHO05D004804 2.2e-09 65.9 68 48.5
Nitab4.5_0005935g0010 Nicotiana tabacum HOM05D004137 ORTHO05D004804 2.2e-09 65.9 68 48.5
Gorai.008G191500 Gossypium raimondii HOM05D004137 ORTHO05D004804 2.8e-09 65.5 72 47.2
BcaC01g01518 Brassica carinata HOM05D004137 ORTHO05D004804 3.7e-09 65.1 74 40.5
A05p17500 Brassica napus HOM05D004137 ORTHO05D004804 3.7e-09 65.1 68 39.7
BolC3t21580H Brassica oleracea HOM05D004137 ORTHO05D004804 3.7e-09 65.1 74 40.5
CARHR045030 Cardamine hirsuta HOM05D004137 ORTHO05D004804 3.7e-09 65.1 68 41.2
Aa31LG3G12400 Aethionema arabicum HOM05D004137 ORTHO05D004804 4.8e-09 64.7 74 41.9
FvH4_3g45760 Fragaria vesca HOM05D004137 ORTHO05D004804 4.8e-09 64.7 61 54.1
FAN11G0915 Fragaria x ananassa HOM05D004137 ORTHO05D004804 4.8e-09 64.7 61 54.1
Lsat_1_v5_gn_2_50221 Lactuca sativa HOM05D004137 ORTHO05D004804 4.8e-09 64.7 100 40.0
Psat7g063840 Pisum sativum HOM05D004137 ORTHO05D004804 4.8e-09 64.7 70 45.7
Gohir.A12G175500 Gossypium hirsutum HOM05D004137 ORTHO05D004804 6.3e-09 64.3 76 44.7
AL8G32280 Arabidopsis lyrata HOM05D004137 ORTHO05D004804 8.2e-09 63.9 69 40.6
AT5G56520 Arabidopsis thaliana HOM05D004137 ORTHO05D004804 8.2e-09 63.9 69 40.6
BcaC03g14217 Brassica carinata HOM05D004137 ORTHO05D004804 8.2e-09 63.9 65 43.1
C02p15170 Brassica napus HOM05D004137 ORTHO05D004804 8.2e-09 63.9 65 43.1
Cc01_g00130 Coffea canephora HOM05D004137 ORTHO05D004804 8.2e-09 63.9 76 42.1
QL04p040762 Quercus lobata HOM05D004137 ORTHO05D004804 8.2e-09 63.9 54 57.4
Medtr8g088460 Medicago truncatula HOM05D004137 ORTHO05D004804 1.1e-08 63.5 70 45.7
Thhalv10015369m.g Eutrema salsugineum HOM05D004137 ORTHO05D004804 1.4e-08 63.2 69 39.1
Lsat_1_v5_gn_1_68820 Lactuca sativa HOM05D004137 ORTHO05D004804 1.4e-08 63.2 70 45.7
C03p92680 Brassica napus HOM05D004137 ORTHO05D004804 1.8e-08 62.8 74 39.2
Gohir.D12G178750 Gossypium hirsutum HOM05D004137 ORTHO05D004804 1.8e-08 62.8 72 45.8
AL7G26620 Arabidopsis lyrata HOM05D004137 ORTHO05D004804 2.4e-08 62.4 93 38.7
Sp1g41045 Schrenkiella parvula HOM05D004137 ORTHO05D004804 2.4e-08 62.4 75 38.7
Lsat_1_v5_gn_1_59720 Lactuca sativa HOM05D004137 ORTHO05D004804 3.1e-08 62.0 75 42.7
Sp7g24280 Schrenkiella parvula HOM05D004137 ORTHO05D004804 3.1e-08 62.0 93 38.7
Manes.08G144511 Manihot esculenta HOM05D004137 ORTHO05D004804 4.1e-08 61.6 80 40.0
CAN.G960.46 Capsicum annuum HOM05D004137 ORTHO05D004804 5.3e-08 61.2 67 43.3
MD03G1003400 Malus domestica HOM05D004137 ORTHO05D004804 5.3e-08 61.2 61 52.5
PGSC0003DMG400037247 Solanum tuberosum HOM05D004137 ORTHO05D004804 6.9e-08 60.8 67 44.8
Carub.0008s1700 Capsella rubella HOM05D004137 ORTHO05D004804 9.1e-08 60.5 65 40.0
CARHR233900 Cardamine hirsuta HOM05D004137 ORTHO05D004804 9.1e-08 60.5 93 38.7
A08p00680 Brassica napus HOM05D004137 ORTHO05D004804 1.2e-07 60.1 68 35.3
A10p13890 Brassica napus HOM05D004137 ORTHO05D004804 1.2e-07 60.1 64 40.6
BraA08t32126Z Brassica rapa HOM05D004137 ORTHO05D004804 1.2e-07 60.1 68 35.3
BraA10t43481Z Brassica rapa HOM05D004137 ORTHO05D004804 1.2e-07 60.1 64 40.6
Solyc10g078570.1 Solanum lycopersicum HOM05D004137 ORTHO05D004804 1.2e-07 60.1 67 43.3
PGSC0003DMG400008382 Solanum tuberosum HOM05D004137 ORTHO05D004804 1.2e-07 60.1 67 43.3
Ciclev10023092m.g Citrus clementina HOM05D004137 ORTHO05D004804 2.0e-07 59.3 71 42.3
Thhalv10027319m.g Eutrema salsugineum HOM05D004137 ORTHO05D004804 2.0e-07 59.3 94 38.3
A05p35990 Brassica napus HOM05D004137 ORTHO05D004804 3.4e-07 58.5 73 41.1
BraA05t22405Z Brassica rapa HOM05D004137 ORTHO05D004804 3.4e-07 58.5 73 41.1
Sopen11g018520 Solanum pennellii HOM05D004137 ORTHO05D004804 3.4e-07 58.5 67 44.8
A01p17580 Brassica napus HOM05D004137 ORTHO05D004804 4.5e-07 58.2 68 42.6
Solyc11g042440.1 Solanum lycopersicum HOM05D004137 ORTHO05D004804 4.5e-07 58.2 67 44.8
HanXRQChr01g0021421 Helianthus annuus HOM05D004137 ORTHO05D004804 5.9e-07 57.8 61 44.3
BcaC04g20079 Brassica carinata HOM05D004137 ORTHO05D004804 7.7e-07 57.4 61 42.6
C09p48110 Brassica napus HOM05D004137 ORTHO05D004804 7.7e-07 57.4 61 42.6
BolC9t57661H Brassica oleracea HOM05D004137 ORTHO05D004804 7.7e-07 57.4 61 42.6
Carub.0007s1461 Capsella rubella HOM05D004137 ORTHO05D004804 7.7e-07 57.4 92 35.9
Thhalv10022151m.g Eutrema salsugineum HOM05D004137 ORTHO05D004804 1.3e-06 56.6 66 43.9
C03p15600 Brassica napus HOM05D004137 ORTHO05D004804 1.7e-06 56.2 72 38.9
Migut.N00553 Erythranthe guttata HOM05D004137 ORTHO05D004804 1.7e-06 56.2 77 40.3
BcaC06g32758 Brassica carinata HOM05D004137 ORTHO05D004804 2.9e-06 55.5 95 36.8
Ah.13g075420 Amaranthus hybridus HOM05D004137 ORTHO05D004804 3.8e-06 55.1 105 41.0
BcaC09g50691 Brassica carinata HOM05D004137 ORTHO05D004804 3.8e-06 55.1 68 42.6
BcaB01g04405 Brassica carinata HOM05D004137 ORTHO05D004804 8.5e-06 53.9 63 41.3
C01p22180 Brassica napus HOM05D004137 ORTHO05D004804 8.5e-06 53.9 68 41.2
C07p54810 Brassica napus HOM05D004137 ORTHO05D004804 8.5e-06 53.9 98 34.7
BolC1t02148H Brassica oleracea HOM05D004137 ORTHO05D004804 8.5e-06 53.9 68 41.2
BolC7t45970H Brassica oleracea HOM05D004137 ORTHO05D004804 8.5e-06 53.9 98 34.7
BraA01t01711Z Brassica rapa HOM05D004137 ORTHO05D004804 8.5e-06 53.9 68 41.2


User provided reference genes

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