Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR102G2751 Punica granatum HOM05D005349 ORTHO05D006901 1.4e-101 372.9 179 100.0
PGR102G2487 Punica granatum HOM05D005349 ORTHO05D006901 9.0e-80 300.4 151 96.0
Potri.009G042300 Populus trichocarpa HOM05D005349 ORTHO05D006901 5.6e-74 281.2 157 80.9
Eucgr.B02277 Eucalyptus grandis HOM05D005349 ORTHO05D006901 1.3e-73 280.0 151 85.4
Sabra09G0029800 Salix brachista HOM05D005349 ORTHO05D006901 3.6e-73 278.5 157 79.6
CiPaw.13G081900 Carya illinoinensis HOM05D005349 ORTHO05D006901 6.2e-73 277.7 150 84.0
QL01p027076 Quercus lobata HOM05D005349 ORTHO05D006901 5.3e-72 274.6 149 83.2
Duzib168G1908 Durio zibethinus HOM05D005349 ORTHO05D006901 1.5e-71 273.1 150 80.7
COL.COLO4_19094 Corchorus olitorius HOM05D005349 ORTHO05D006901 3.4e-71 271.9 150 82.7
Gohir.A13G225100 Gossypium hirsutum HOM05D005349 ORTHO05D006901 4.5e-71 271.6 150 80.7
Manes.17G019100 Manihot esculenta HOM05D005349 ORTHO05D006901 4.5e-71 271.6 150 83.3
FAN11G0404 Fragaria x ananassa HOM05D005349 ORTHO05D006901 5.8e-71 271.2 150 83.3
Gorai.013G260800 Gossypium raimondii HOM05D005349 ORTHO05D006901 5.8e-71 271.2 150 80.7
RcHm_v2.0_Chr5g0068461 Rosa chinensis HOM05D005349 ORTHO05D006901 5.8e-71 271.2 147 83.7
Gohir.D13G230100 Gossypium hirsutum HOM05D005349 ORTHO05D006901 2.9e-70 268.9 150 80.0
FvH4_3g38110 Fragaria vesca HOM05D005349 ORTHO05D006901 3.8e-70 268.5 150 82.7
Cpa.g.sc112.60 Carica papaya HOM05D005349 ORTHO05D006901 6.4e-70 267.7 148 81.1
Cfa011642 Carpinus fangiana HOM05D005349 ORTHO05D006901 6.4e-70 267.7 150 80.0
Thecc.09G306800 Theobroma cacao HOM05D005349 ORTHO05D006901 6.4e-70 267.7 157 75.8
Haze_24248 Corylus avellana HOM05D005349 ORTHO05D006901 1.1e-69 266.9 150 80.0
Hma1.2p1_0543F.1_g175200 Hydrangea macrophylla HOM05D005349 ORTHO05D006901 1.4e-69 266.5 152 78.9
FAN16G1977 Fragaria x ananassa HOM05D005349 ORTHO05D006901 1.9e-69 266.2 150 82.0
Dinv28589 Davidia involucrata HOM05D005349 ORTHO05D006901 2.4e-69 265.8 151 79.5
Dinv28608 Davidia involucrata HOM05D005349 ORTHO05D006901 2.4e-69 265.8 151 79.5
Sed0012895 Sechium edule HOM05D005349 ORTHO05D006901 2.4e-69 265.8 151 78.8
AUR62020092 Chenopodium quinoa HOM05D005349 ORTHO05D006901 3.2e-69 265.4 141 84.4
THA.LOC104810731 Tarenaya hassleriana HOM05D005349 ORTHO05D006901 3.2e-69 265.4 151 79.5
CsaV3_1G035930 Cucumis sativus L. HOM05D005349 ORTHO05D006901 5.4e-69 264.6 151 78.8
AUR62001690 Chenopodium quinoa HOM05D005349 ORTHO05D006901 7.1e-69 264.2 141 83.7
Hma1.2p1_3368F.1_g335610 Hydrangea macrophylla HOM05D005349 ORTHO05D006901 9.3e-69 263.8 149 79.2
Prupe.6G061600 Prunus persica HOM05D005349 ORTHO05D006901 9.3e-69 263.8 143 82.5
Ah.13g068160 Amaranthus hybridus HOM05D005349 ORTHO05D006901 1.6e-68 263.1 144 81.9
MELO3C020577.2 Cucumis melo HOM05D005349 ORTHO05D006901 1.6e-68 263.1 151 78.8
CSS0008956 Camellia sinensis var. sinensis HOM05D005349 ORTHO05D006901 2.1e-68 262.7 149 77.2
Lj4P290T21 Lonicera japonica HOM05D005349 ORTHO05D006901 2.1e-68 262.7 151 78.1
MD03G1077000 Malus domestica HOM05D005349 ORTHO05D006901 3.5e-68 261.9 146 80.1
MD11G1081300 Malus domestica HOM05D005349 ORTHO05D006901 3.5e-68 261.9 146 80.8
Hund18861 Selenicereus undatus HOM05D005349 ORTHO05D006901 7.9e-68 260.8 141 83.7
Ah.13g068140 Amaranthus hybridus HOM05D005349 ORTHO05D006901 1.0e-67 260.4 140 82.9
Sp6g20620 Schrenkiella parvula HOM05D005349 ORTHO05D006901 1.0e-67 260.4 151 77.5
ClCG03G001010 Citrullus lanatus HOM05D005349 ORTHO05D006901 1.3e-67 260.0 151 80.1
Thhalv10014880m.g Eutrema salsugineum HOM05D005349 ORTHO05D006901 2.3e-67 259.2 151 77.5
AL8G35250 Arabidopsis lyrata HOM05D005349 ORTHO05D006901 3.0e-67 258.8 151 76.8
Sc12g0000960 Simmondsia chinensis HOM05D005349 ORTHO05D006901 3.0e-67 258.8 141 83.0
Oeu009384.1 Olea europaea HOM05D005349 ORTHO05D006901 5.1e-67 258.1 148 77.0
Migut.I00090 Erythranthe guttata HOM05D005349 ORTHO05D006901 1.1e-66 256.9 148 77.0
BolC3t13854H Brassica oleracea HOM05D005349 ORTHO05D006901 1.5e-66 256.5 156 75.0
BraA03t10509Z Brassica rapa HOM05D005349 ORTHO05D006901 1.5e-66 256.5 156 75.0
A03p11980 Brassica napus HOM05D005349 ORTHO05D006901 1.9e-66 256.1 151 75.5
C03p14070 Brassica napus HOM05D005349 ORTHO05D006901 1.9e-66 256.1 151 75.5
Carub.0008s1956 Capsella rubella HOM05D005349 ORTHO05D006901 1.9e-66 256.1 151 75.5
Nn2g13609 Nelumbo nucifera HOM05D005349 ORTHO05D006901 1.9e-66 256.1 147 79.6
Oeu049278.1 Olea europaea HOM05D005349 ORTHO05D006901 1.9e-66 256.1 148 77.0
Rhsim01G0234700 Rhododendron simsii HOM05D005349 ORTHO05D006901 1.9e-66 256.1 147 79.6
Solyc02g087650.4 Solanum lycopersicum HOM05D005349 ORTHO05D006901 2.5e-66 255.8 156 73.7
CAN.G206.119 Capsicum annuum HOM05D005349 ORTHO05D006901 3.3e-66 255.4 147 78.2
Aa31LG1G11620 Aethionema arabicum HOM05D005349 ORTHO05D006901 5.6e-66 254.6 151 77.5
BcaC03g14066 Brassica carinata HOM05D005349 ORTHO05D006901 5.6e-66 254.6 151 76.2
A02p07450 Brassica napus HOM05D005349 ORTHO05D006901 5.6e-66 254.6 151 75.5
BraA02t05823Z Brassica rapa HOM05D005349 ORTHO05D006901 5.6e-66 254.6 151 75.5
AT5G58920 Arabidopsis thaliana HOM05D005349 ORTHO05D006901 7.4e-66 254.2 151 75.5
Sopen02g032400 Solanum pennellii HOM05D005349 ORTHO05D006901 7.4e-66 254.2 155 72.9
CARHR272860 Cardamine hirsuta HOM05D005349 ORTHO05D006901 9.6e-66 253.8 151 74.2
Nitab4.5_0000021g0450 Nicotiana tabacum HOM05D001216 ORTHO05D008355 1.3e-65 253.4 147 76.2
C02p13010 Brassica napus HOM05D005349 ORTHO05D006901 1.6e-65 253.1 151 76.2
MSTRG.12084 Avicennia marina HOM05D005349 ORTHO05D006901 2.1e-65 252.7 146 77.4
BolC2t07413H Brassica oleracea HOM05D005349 ORTHO05D006901 2.1e-65 252.7 151 75.5
Nitab4.5_0002265g0210 Nicotiana tabacum HOM05D005349 ORTHO05D006901 4.8e-65 251.5 147 75.5
PGSC0003DMG400001310 Solanum tuberosum HOM05D005349 ORTHO05D006901 4.8e-65 251.5 147 76.2
PGSC0003DMG400001415 Solanum tuberosum HOM05D005349 ORTHO05D006901 4.8e-65 251.5 147 76.2
DCAR_007395 Daucus carota HOM05D005349 ORTHO05D006901 1.1e-64 250.4 151 73.5
DCAR_005899 Daucus carota HOM05D005349 ORTHO05D006901 1.4e-64 250.0 148 76.4
Peaxi162Scf00129g00059 Petunia axillaris HOM05D005349 ORTHO05D006901 2.4e-64 249.2 158 70.9
BcaB05g22458 Brassica carinata HOM05D005349 ORTHO05D006901 4.0e-64 248.4 150 75.3
TAR633G1541 Trochodendron aralioides HOM05D005349 ORTHO05D006901 1.5e-63 246.5 147 76.9
arahy.Tifrunner.gnm1.ann1.AUQG9H Arachis hypogaea HOM05D005349 ORTHO05D006901 2.6e-63 245.7 143 79.0
arahy.Tifrunner.gnm1.ann1.S3TFE0 Arachis hypogaea HOM05D005349 ORTHO05D006901 2.6e-63 245.7 143 79.0
Cc01_g13820 Coffea canephora HOM05D005349 ORTHO05D006901 2.6e-63 245.7 143 76.9
arahy.Tifrunner.gnm1.ann1.2I3SKZ Arachis hypogaea HOM05D005349 ORTHO05D006901 3.4e-63 245.4 143 79.0
Lalb_Chr17g0344951 Lupinus albus HOM05D005349 ORTHO05D006901 3.4e-63 245.4 143 79.7
arahy.Tifrunner.gnm1.ann1.TC15WI Arachis hypogaea HOM05D005349 ORTHO05D006901 4.5e-63 245.0 143 79.0
PSO017G5320 Papaver somniferum HOM05D005349 ORTHO05D006901 4.5e-63 245.0 144 75.7
PSO675G4048 Papaver somniferum HOM05D005349 ORTHO05D006901 4.5e-63 245.0 144 75.7
MBI06_g38157_MAGBIO Magnolia biondii HOM05D005349 ORTHO05D006901 1.3e-62 243.4 147 74.8
SalBow2G1455 Salvia bowleyana HOM05D005349 ORTHO05D006901 1.7e-62 243.0 146 74.0
unitig_0.g448 Utricularia gibba HOM05D005349 ORTHO05D006901 1.7e-62 243.0 148 75.0
Nn7g36392 Nelumbo nucifera HOM05D005349 ORTHO05D006901 2.2e-62 242.7 142 78.2
TAR369G0142 Trochodendron aralioides HOM05D005349 ORTHO05D006901 2.2e-62 242.7 141 78.0
TAR369G0898 Trochodendron aralioides HOM05D005349 ORTHO05D006901 2.2e-62 242.7 142 77.5
Glyma.14G191200 Glycine max HOM05D005349 ORTHO05D006901 2.9e-62 242.3 142 77.5
Psat2g059680 Pisum sativum HOM05D005349 ORTHO05D006901 2.9e-62 242.3 157 70.1
Ciclev10029468m.g Citrus clementina HOM05D005349 ORTHO05D006901 1.1e-61 240.4 157 71.3
Ca_05579_v3 Cicer arietinum L. HOM05D005349 ORTHO05D006901 1.9e-61 239.6 143 74.8
VMungo0647G2322 Vigna mungo HOM05D005349 ORTHO05D006901 1.9e-61 239.6 143 75.5
LjContig00155g0000909 Lotus japonicus HOM05D005349 ORTHO05D006901 5.5e-61 238.0 142 76.1
Medtr5g069660 Medicago truncatula HOM05D005349 ORTHO05D006901 9.3e-61 237.3 142 75.4
TAR369G0502 Trochodendron aralioides HOM05D005349 ORTHO05D006901 3.5e-60 235.3 137 77.4
Phvul.008G263400 Phaseolus vulgaris HOM05D005349 ORTHO05D006901 7.9e-60 234.2 143 73.4
HanXRQChr08g0237161 Helianthus annuus HOM05D005349 ORTHO05D006901 3.0e-59 232.3 157 69.4
Ah.06g188660 Amaranthus hybridus HOM05D005349 ORTHO05D006901 6.7e-59 231.1 124 85.5
ATR0618G061 Amborella trichopoda HOM05D005349 ORTHO05D006901 1.5e-58 229.9 144 70.1
Aqoxy3G03834 Aquilegia oxysepala HOM05D005349 ORTHO05D006901 2.5e-58 229.2 146 70.5
Zm00001eb031680 Zea mays HOM05D005349 ORTHO05D006901 2.5e-58 229.2 136 74.3
TWI31G0683 Tripterygium wilfordii HOM05D005349 ORTHO05D006901 4.3e-58 228.4 151 69.5
Lsat_1_v5_gn_9_25761 Lactuca sativa HOM05D005349 ORTHO05D006901 1.6e-57 226.5 147 69.4
SGA_v2.0_scaffold120G32925 Striga asiatica HOM05D005349 ORTHO05D006901 2.1e-57 226.1 142 70.4
TPR.G24015 Trifolium pratense HOM05D005349 ORTHO05D006901 2.1e-57 226.1 142 71.8
ECA236G3830 Erigeron canadensis HOM05D005329 ORTHO05D006858 4.8e-57 224.9 142 71.1
Aqoxy5G03549 Aquilegia oxysepala HOM05D005349 ORTHO05D006901 1.4e-56 223.4 139 72.7
GSVIVG01024797001 Vitis vinifera HOM05D005349 ORTHO05D006901 2.4e-56 222.6 176 60.2
CANSAT54G2462 Cannabis sativa HOM05D005349 ORTHO05D006901 4.0e-56 221.9 150 68.0
HanXRQChr02g0036251 Helianthus annuus HOM05D005349 ORTHO05D006901 5.3e-56 221.5 144 70.8
CDE05G1614 Ceratophyllum demersum HOM05D005349 ORTHO05D006901 2.6e-55 219.2 146 67.8
Actinidia23901 Actinidia chinensis HOM05D005349 ORTHO05D006901 5.8e-55 218.0 149 66.4
COL.COLO4_19096 Corchorus olitorius HOM05D005349 ORTHO05D006901 3.3e-50 202.2 108 86.1
BcaB01g04630 Brassica carinata HOM05D005349 ORTHO05D006901 6.3e-49 198.0 156 62.8
Lalb_Chr15g0082641 Lupinus albus HOM05D005349 ORTHO05D006901 2.2e-46 189.5 148 60.1
RcHm_v2.0_Chr5g0068491 Rosa chinensis HOM05D005349 ORTHO05D006901 2.9e-46 189.1 147 63.3
Lalb_Chr15g0082661 Lupinus albus HOM05D005349 ORTHO05D006901 8.5e-46 187.6 150 58.0
SEGI_38965 Sequoiadendron giganteum HOM05D005349 ORTHO05D006901 6.1e-44 181.4 123 72.4
SEGI_26492 Sequoiadendron giganteum HOM05D005349 ORTHO05D006901 3.3e-42 175.6 124 70.2
Mapoly0132s0009 Marchantia polymorpha HOM05D005349 ORTHO05D006901 6.3e-41 171.4 123 63.4
Lj6g0020380 Lotus japonicus HOM05D005349 ORTHO05D006901 2.4e-40 169.5 148 60.1
Ca_14903_v3 Cicer arietinum L. HOM05D005349 ORTHO05D006901 4.1e-40 168.7 149 57.0
ECA247G0916 Erigeron canadensis HOM05D000773 ORTHO05D006901 1.0e-38 164.1 104 71.2
Pp3c5_10690 Physcomitrium patens HOM05D005349 ORTHO05D006901 7.9e-36 154.5 123 58.5
Psat5g161800 Pisum sativum HOM05D005349 ORTHO05D006901 3.9e-35 152.1 149 52.3
Medtr3g462700 Medicago truncatula HOM05D005349 ORTHO05D006901 4.4e-34 148.7 149 51.7
arahy.Tifrunner.gnm1.ann1.B244J5 Arachis hypogaea HOM05D005349 ORTHO05D006901 1.4e-32 143.7 161 51.6
Os01g0362000 Oryza sativa ssp. japonica HOM05D005349 ORTHO05D006901 1.4e-32 143.7 90 74.4
arahy.Tifrunner.gnm1.ann1.NW0IJW Arachis hypogaea HOM05D005349 ORTHO05D006901 2.4e-32 142.9 161 51.6
Glyma.18G064800 Glycine max HOM05D005349 ORTHO05D006901 5.9e-31 138.3 148 48.0
TPR.G13285 Trifolium pratense HOM05D005349 ORTHO05D006901 1.7e-30 136.7 150 48.0
Phvul.006G066000 Phaseolus vulgaris HOM05D005349 ORTHO05D006901 3.2e-29 132.5 149 46.3
CSS0044332 Camellia sinensis var. sinensis HOM05D005349 ORTHO05D006901 7.4e-26 121.3 72 69.4
BcaC04g19863 Brassica carinata HOM05D005349 ORTHO05D023983 4.1e-24 115.5 128 46.1
Nitab4.5_0000564g0380 Nicotiana tabacum HOM05D005349 ORTHO05D006901 3.5e-23 112.5 67 82.1
A10p15360 Brassica napus HOM05D005349 ORTHO05D006901 1.8e-16 90.1 63 61.9
BolC9t57969H Brassica oleracea HOM05D005349 ORTHO05D023983 2.2e-14 83.2 122 38.5
BcaB01g04628 Brassica carinata HOM05D005349 ORTHO05D023983 4.2e-13 79.0 53 69.8
HanXRQChr08g0237061 Helianthus annuus HOM05D005349 ORTHO05D006901 4.0e-11 72.4 62 59.7
C09p51090 Brassica napus HOM05D005349 ORTHO05D023983 6.8e-11 71.6 49 67.3
SEGI_40143 Sequoiadendron giganteum HOM05D005349 ORTHO05D006901 7.5e-10 68.2 58 58.6
BraA10t43697Z Brassica rapa HOM05D005349 ORTHO05D023983 4.1e-08 62.4 46 63.0
TAR623G0970 Trochodendron aralioides HOM05D005349 ORTHO05D415159 2.0e-07 60.1 43 67.4


User provided reference genes

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